Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 5 5 N 1.46510 * 109.46482 * 185.00036 * 4 2 1 6 6 C 1.34776 * 119.99685 * 179.97438 * 5 4 2 7 7 O 1.21286 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00053 * 180.02562 * 6 5 4 9 9 S 1.80993 * 109.47548 * 180.02562 * 8 6 5 10 10 C 1.76201 * 100.00262 * 179.97438 * 9 8 6 11 11 H 1.07991 * 119.99947 * 359.97438 * 10 9 8 12 12 C 1.38793 * 119.99951 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00238 * 359.97438 * 12 10 9 14 14 Si 1.86804 * 120.00115 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47339 * 89.99822 * 14 12 10 16 16 H 1.48497 * 109.47215 * 210.00071 * 14 12 10 17 17 H 1.48505 * 109.46703 * 329.99825 * 14 12 10 18 18 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 19 19 C 1.34777 * 119.99665 * 275.27771 * 18 2 1 20 20 O 1.21553 * 120.00289 * 359.72074 * 19 18 2 21 21 C 1.47855 * 119.99755 * 179.72373 * 19 18 2 22 22 C 1.39595 * 120.13152 * 359.72552 * 21 19 18 23 23 C 1.37944 * 119.90248 * 179.69993 * 22 21 19 24 24 C 1.38342 * 120.17266 * 0.59241 * 23 22 21 25 25 C 1.38543 * 120.26962 * 359.68116 * 24 23 22 26 26 F 1.35100 * 119.95701 * 180.02562 * 25 24 23 27 27 C 1.38216 * 120.09029 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47318 * 304.99131 * 4 2 1 32 32 H 1.08988 * 109.47710 * 65.00381 * 4 2 1 33 33 H 0.97003 * 120.00089 * 359.97438 * 5 4 2 34 34 H 1.09005 * 109.46850 * 300.00165 * 8 6 5 35 35 H 1.09002 * 109.47363 * 59.99949 * 8 6 5 36 36 H 0.96997 * 120.00031 * 180.02562 * 13 12 10 37 37 H 0.97001 * 119.99790 * 94.99484 * 18 2 1 38 38 H 1.08007 * 120.04929 * 359.97438 * 22 21 19 39 39 H 1.07998 * 119.91311 * 180.29776 * 23 22 21 40 40 H 1.08001 * 119.86303 * 179.69916 * 24 23 22 41 41 H 1.07998 * 120.08535 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1729 -1.4290 -2.1908 7 8 3.5697 -1.8848 -3.1392 8 6 5.6748 -1.5377 -2.1302 9 16 6.2782 -2.3907 -3.6081 10 6 8.0099 -2.3778 -3.2834 11 1 8.3862 -1.9247 -2.3782 12 6 8.8905 -2.9499 -4.1909 13 7 8.4318 -3.5026 -5.2940 14 14 10.7264 -2.9369 -3.8463 15 1 11.0973 -4.1616 -3.0928 16 1 11.4709 -2.9014 -5.1306 17 1 11.0704 -1.7373 -3.0414 18 7 2.0183 -0.6907 1.1961 19 6 2.1417 -0.0197 2.3585 20 8 1.8526 1.1597 2.4131 21 6 2.6287 -0.7183 3.5672 22 6 2.9561 -2.0740 3.5089 23 6 3.4160 -2.7196 4.6379 24 6 3.5419 -2.0299 5.8305 25 6 3.2136 -0.6856 5.8979 26 9 3.3395 -0.0181 7.0657 27 6 2.7575 -0.0264 4.7719 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7197 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 3.9824 -0.4621 -0.4319 34 1 6.1097 -0.5392 -2.0844 35 1 5.9628 -2.1006 -1.2424 36 1 9.0472 -3.9028 -5.9281 37 1 2.2489 -1.6319 1.1525 38 1 2.8537 -2.6157 2.5801 39 1 3.6739 -3.7673 4.5918 40 1 3.8978 -2.5415 6.7126 41 1 2.5021 1.0216 4.8244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738564015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -122.355775 kcal Electronic energy + Delta-G solvation = -25652.202644 eV Core-core repulsion = 21571.561018 eV Total energy + Delta-G solvation = -4080.641626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.98427 -41.49567 -40.56547 -39.29947 -37.48845 -34.91404 -34.56841 -33.09445 -32.03822 -31.23150 -30.62188 -27.72848 -26.85494 -25.46144 -23.71484 -22.58473 -21.74164 -21.61055 -19.92036 -19.46972 -17.98692 -17.73829 -17.51454 -17.26791 -16.97259 -16.86919 -16.76432 -16.72225 -16.36238 -16.04128 -15.79013 -15.20697 -14.85161 -14.82049 -14.52491 -14.26841 -14.15737 -13.86213 -13.76155 -13.27198 -13.19810 -13.15182 -13.02480 -12.92906 -12.87935 -12.59637 -12.41378 -12.07453 -11.71672 -11.17203 -11.13108 -10.98414 -10.39584 -10.26078 -10.16735 -10.12395 -9.85245 -8.64575 -8.33719 -6.11068 -0.37703 0.09439 1.27999 1.43154 1.47886 1.58049 1.61292 1.67621 1.90417 2.25898 2.30408 2.65046 3.00633 3.16919 3.33047 3.49054 3.57862 3.72859 3.95431 3.97908 4.01782 4.05608 4.23528 4.25166 4.31386 4.53277 4.58060 4.64065 4.69738 4.77077 4.90723 4.97043 5.01798 5.12402 5.22219 5.23570 5.34263 5.41034 5.43384 5.73959 6.20989 6.37117 6.44017 7.04910 7.08131 7.21506 8.75278 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010624 B = 0.002419 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.002823 B =11572.785749 C =13602.535947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.088 0.912 4 C 0.116 3.884 5 N -0.714 5.714 6 C 0.538 3.462 7 O -0.560 6.560 8 C -0.132 4.132 9 S -0.147 6.147 10 C -0.546 4.546 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.996 3.004 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.260 1.260 18 N -0.708 5.708 19 C 0.563 3.437 20 O -0.570 6.570 21 C -0.120 4.120 22 C -0.087 4.087 23 C -0.090 4.090 24 C -0.122 4.122 25 C 0.073 3.927 26 F -0.147 7.147 27 C -0.112 4.112 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.412 0.588 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.271 0.729 37 H 0.415 0.585 38 H 0.160 0.840 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 2.770 23.225 27.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.008 4.008 5 N -0.369 5.369 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.283 4.283 9 S 0.080 5.920 10 C -0.694 4.694 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.184 1.184 18 N -0.361 5.361 19 C 0.351 3.649 20 O -0.450 6.450 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.141 4.141 25 C 0.054 3.946 26 F -0.125 7.125 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.177 0.823 39 H 0.191 0.809 40 H 0.180 0.820 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.242 2.802 21.547 26.541 hybrid contribution 1.967 0.629 1.471 2.535 sum -13.275 3.432 23.018 26.792 Atomic orbital electron populations 1.22073 0.92666 1.03612 1.03178 1.21174 0.95824 0.97099 0.82234 0.89425 1.21749 0.79312 1.02069 0.97706 1.45739 1.07778 1.59937 1.23426 1.19965 0.88723 0.76961 0.82002 1.90710 1.70301 1.48358 1.34435 1.23386 0.94932 1.05638 1.04382 1.85541 1.05653 1.74923 1.25879 1.23195 0.91836 1.44270 1.10067 0.90014 1.26092 1.05061 0.93880 0.94037 1.70174 1.37359 1.36536 1.10645 0.84984 0.75996 0.79265 0.77929 1.19173 1.20459 1.18375 1.45924 1.66639 1.14885 1.08641 1.18343 0.76932 0.85972 0.83626 1.90788 1.51557 1.17138 1.85536 1.19675 1.04602 0.95224 0.92858 1.21737 0.95923 0.92158 1.00775 1.21423 0.96711 1.02059 0.90538 1.21739 0.99270 0.91732 1.01361 1.17765 1.03596 0.91783 0.81450 1.91504 1.93939 1.80919 1.46165 1.21207 0.99236 1.01313 0.91410 0.92646 0.89926 0.90674 0.89960 0.89996 0.75163 0.87749 0.86921 0.92013 0.74708 0.82266 0.80891 0.82006 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 71.98 0.68 -1.24 16 2 C 0.14 2.00 2.73 44.99 0.12 2.13 16 3 H 0.09 1.52 7.58 -2.39 -0.02 1.50 16 4 C 0.12 1.99 5.23 86.38 0.45 2.44 16 5 N -0.71 -15.27 5.39 -463.05 -2.49 -17.76 16 6 C 0.54 17.87 7.85 87.66 0.69 18.56 16 7 O -0.56 -23.79 15.86 -3.05 -0.05 -23.84 16 8 C -0.13 -4.90 6.16 71.24 0.44 -4.46 16 9 S -0.15 -7.87 20.57 -56.49 -1.16 -9.03 16 10 C -0.55 -30.38 9.50 67.95 0.65 -29.74 16 11 H 0.08 4.23 7.80 -2.92 -0.02 4.20 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -54.93 13.22 21.65 0.29 -54.65 16 14 Si 1.00 42.74 29.55 68.60 2.03 44.77 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 N -0.71 -9.02 4.47 -445.40 -1.99 -11.01 16 19 C 0.56 10.17 7.74 86.79 0.67 10.85 16 20 O -0.57 -14.80 16.01 -3.88 -0.06 -14.86 16 21 C -0.12 -1.83 5.87 -20.09 -0.12 -1.95 16 22 C -0.09 -0.80 9.54 22.53 0.21 -0.58 16 23 C -0.09 -0.66 10.03 22.22 0.22 -0.43 16 24 C -0.12 -1.24 10.02 22.37 0.22 -1.02 16 25 C 0.07 1.16 7.29 22.34 0.16 1.32 16 26 F -0.15 -2.71 17.26 44.97 0.78 -1.93 16 27 C -0.11 -1.98 9.57 22.57 0.22 -1.77 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 6.97 8.14 -92.71 -0.75 6.22 16 34 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.41 3.44 6.64 -92.71 -0.62 2.82 16 38 H 0.16 0.61 6.40 -2.91 -0.02 0.59 16 39 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.13 2.66 7.65 -2.91 -0.02 2.64 16 Total: -1.00 -80.15 375.80 2.14 -78.01 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.28 Total: 14.94 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.09 Total: -4.64 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -4.20 Total: -83.42 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.11 Total: -38.70 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -7.87 SS G_CDS: -1.16 Total: -9.03 kcal Total: -80.15 2.14 -78.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738564015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.341 kcal (2) G-P(sol) polarization free energy of solvation -80.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds