Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28722 * 125.32156 * 2 1 4 4 N 1.28985 * 108.98644 * 179.68486 * 3 2 1 5 5 C 1.34187 * 107.25431 * 0.43075 * 4 3 2 6 6 C 1.48007 * 126.70372 * 179.83586 * 5 4 3 7 7 O 1.21534 * 120.00044 * 179.68426 * 6 5 4 8 8 N 1.34776 * 119.99465 * 359.68810 * 6 5 4 9 9 C 1.46500 * 119.99541 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46740 * 179.97438 * 9 8 6 11 11 C 1.53501 * 114.20620 * 184.99715 * 10 9 8 12 12 N 1.47065 * 87.98741 * 220.15007 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31626 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47145 * 60.00107 * 21 19 17 23 23 H 1.48496 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47229 * 300.00299 * 21 19 17 25 25 C 1.47067 * 87.88381 * 27.34024 * 12 11 10 26 26 N 1.28873 * 125.31695 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47702 * 270.04985 * 1 2 3 28 28 H 1.09004 * 109.46834 * 30.04331 * 1 2 3 29 29 H 1.08999 * 109.47659 * 150.04167 * 1 2 3 30 30 H 0.97004 * 120.00382 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47448 * 60.00063 * 9 8 6 32 32 H 1.08992 * 109.47028 * 299.99605 * 9 8 6 33 33 H 1.09001 * 113.28594 * 318.06464 * 10 9 8 34 34 H 1.09001 * 113.46643 * 105.36708 * 11 10 9 35 35 H 1.09004 * 113.51834 * 334.94152 * 11 10 9 36 36 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 37 37 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 38 38 H 0.97004 * 120.00604 * 179.97438 * 20 19 17 39 39 H 1.09010 * 113.46411 * 87.43777 * 25 12 11 40 40 H 1.08997 * 113.47100 * 217.87349 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6875 0.0067 5 6 3.4685 -0.6542 0.0014 6 6 4.6692 -1.5196 0.0025 7 8 4.5467 -2.7288 0.0030 8 7 5.8983 -0.9667 0.0029 9 6 7.0868 -1.8233 0.0034 10 6 8.3439 -0.9511 0.0032 11 6 9.6560 -1.7384 -0.1183 12 7 10.2392 -0.8183 0.8697 13 6 11.4735 -0.3620 1.1608 14 8 12.4268 -0.7351 0.5106 15 6 11.6692 0.6108 2.2949 16 16 13.4243 1.0307 2.4336 17 6 13.3650 2.1481 3.7946 18 1 12.4204 2.3746 4.2667 19 6 14.5330 2.7326 4.2642 20 7 15.6851 2.4525 3.6924 21 14 14.4701 3.9178 5.7066 22 1 13.9143 3.2221 6.8950 23 1 15.8411 4.4002 6.0111 24 1 13.6047 5.0738 5.3601 25 6 8.8835 -0.6201 1.4043 26 7 2.2099 -1.0516 0.0005 27 1 -0.3635 0.0009 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3634 -0.8903 -0.5132 30 1 5.9960 -0.0016 0.0022 31 1 7.0815 -2.4526 -0.8866 32 1 7.0808 -2.4524 0.8933 33 1 8.2735 -0.0938 -0.6663 34 1 10.1162 -1.6657 -1.1038 35 1 9.5811 -2.7662 0.2369 36 1 11.3299 0.1566 3.2259 37 1 11.0930 1.5155 2.1010 38 1 16.5014 2.8612 4.0202 39 1 8.6041 -1.3529 2.1614 40 1 8.6856 0.4054 1.7163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746017936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = 108.313314 kcal Electronic energy + Delta-G solvation = -25136.634424 eV Core-core repulsion = 21118.208073 eV Total energy + Delta-G solvation = -4018.426351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.96790 -40.65919 -39.78813 -37.68845 -35.84705 -35.15138 -33.74009 -32.43319 -31.23248 -29.75519 -28.84500 -26.60717 -26.11048 -25.47545 -24.86203 -23.50938 -21.57277 -21.29498 -19.12693 -18.90245 -18.18962 -17.72951 -17.46689 -16.75264 -16.58943 -15.98643 -15.71584 -15.31007 -14.80564 -14.77632 -14.62612 -14.40664 -14.10967 -13.94152 -13.79631 -13.50743 -13.13773 -12.81262 -12.72247 -12.50926 -12.30773 -11.97407 -11.72610 -11.67539 -11.64855 -11.05607 -11.03878 -11.00149 -10.96450 -10.77714 -10.75540 -9.83646 -9.64981 -9.42508 -9.06257 -8.64769 -8.25264 -6.51251 -6.21689 -3.92873 0.42570 0.90242 1.16074 2.27223 2.58755 2.73227 3.03211 3.23637 3.24221 3.28931 3.41067 3.52367 3.55123 3.93791 4.17018 4.19998 4.27531 4.40315 4.48842 4.57405 4.67546 4.75145 4.94176 5.02410 5.13337 5.21345 5.25814 5.30329 5.34949 5.37422 5.47691 5.57943 5.71803 5.85523 5.94368 5.98795 6.13344 6.80489 7.44986 7.59043 7.63926 7.81833 8.34769 8.51469 9.23319 10.85674 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.001789 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.540388 B =15643.897633 C =17132.182173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.133 5.133 3 N -0.052 5.052 4 N -0.252 5.252 5 C 0.127 3.873 6 C 0.619 3.381 7 O -0.506 6.506 8 N -0.704 5.704 9 C 0.133 3.867 10 C -0.143 4.143 11 C 0.117 3.883 12 N -0.654 5.654 13 C 0.563 3.437 14 O -0.513 6.513 15 C -0.145 4.145 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.105 3.895 26 N -0.247 5.247 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.414 0.586 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.087 0.913 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.092 -6.064 -8.432 34.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.046 5.046 3 N -0.046 5.046 4 N -0.127 5.127 5 C -0.157 4.157 6 C 0.398 3.602 7 O -0.377 6.377 8 N -0.357 5.357 9 C 0.010 3.990 10 C -0.162 4.162 11 C -0.007 4.007 12 N -0.393 5.393 13 C 0.353 3.647 14 O -0.386 6.386 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.019 4.019 26 N -0.101 5.101 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.250 0.750 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -31.653 -6.875 -9.336 33.709 hybrid contribution -1.083 1.309 1.794 2.470 sum -32.736 -5.566 -7.542 34.051 Atomic orbital electron populations 1.22611 0.68188 1.07428 1.06665 1.50291 1.11281 1.00583 1.42463 1.78976 0.96278 1.13925 1.15401 1.76151 1.10278 1.09963 1.16307 1.25269 0.93204 0.90361 1.06830 1.16026 0.80715 0.85658 0.77794 1.90884 1.85581 1.12750 1.48462 1.45669 1.04359 1.11691 1.73968 1.21420 0.81242 0.92482 1.03865 1.23356 0.93202 1.00472 0.99212 1.22783 0.88900 0.94342 0.94672 1.49589 1.06144 1.47271 1.36250 1.19940 0.79627 0.80864 0.84286 1.90721 1.38305 1.58442 1.51154 1.23472 1.08070 0.99897 0.98069 1.85405 0.96275 1.57828 1.43814 1.22816 0.96516 1.30809 1.18306 0.90955 1.24988 0.94501 0.96642 0.97392 1.70005 0.98214 1.41907 1.40123 0.86220 0.77434 0.80439 0.81387 1.19937 1.20790 1.19912 1.23144 0.80367 1.02903 0.95495 1.75100 1.02405 1.14432 1.18136 0.87418 0.86383 0.86608 0.74973 0.89809 0.89907 0.86630 0.89934 0.89607 0.89304 0.89247 0.92101 0.89499 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.03 11.62 59.84 0.70 0.73 16 2 N -0.13 -0.86 4.39 -16.65 -0.07 -0.94 16 3 N -0.05 -0.44 13.23 60.35 0.80 0.36 16 4 N -0.25 -2.39 12.26 32.10 0.39 -2.00 16 5 C 0.13 1.25 8.14 -156.24 -1.27 -0.03 16 6 C 0.62 6.03 7.84 -12.26 -0.10 5.94 16 7 O -0.51 -6.41 17.10 5.34 0.09 -6.32 16 8 N -0.70 -4.90 5.55 -61.20 -0.34 -5.24 16 9 C 0.13 0.83 5.59 -4.04 -0.02 0.81 16 10 C -0.14 -0.97 4.11 -89.97 -0.37 -1.34 16 11 C 0.12 1.13 8.19 -8.51 -0.07 1.06 16 12 N -0.65 -8.94 3.69 -185.05 -0.68 -9.62 16 13 C 0.56 10.88 8.10 -10.99 -0.09 10.80 16 14 O -0.51 -12.04 16.64 5.56 0.09 -11.95 16 15 C -0.14 -2.98 5.98 36.00 0.22 -2.77 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 21 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.10 0.93 8.00 -8.38 -0.07 0.87 16 26 N -0.25 -2.28 12.17 32.11 0.39 -1.89 16 27 H 0.11 -0.14 8.14 -51.93 -0.42 -0.56 16 28 H 0.12 -0.20 8.14 -51.93 -0.42 -0.63 16 29 H 0.12 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.41 2.33 8.22 -40.82 -0.34 2.00 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.52 7.81 -51.93 -0.41 0.12 16 33 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 0.67 7.88 -51.92 -0.41 0.26 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 373.67 15.07 5.63 5.63 Total: -1.00 -40.22 373.67 -6.00 -46.22 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.92 Total: -4.38 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.88 Total: 3.05 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 1.22 Total: -44.80 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -40.22 -6.00 -46.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746017936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.534 kcal (2) G-P(sol) polarization free energy of solvation -40.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds