Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28722 * 125.32156 * 2 1 4 4 N 1.28985 * 108.98644 * 179.68486 * 3 2 1 5 5 C 1.34187 * 107.25431 * 0.43075 * 4 3 2 6 6 C 1.48007 * 126.70372 * 179.83586 * 5 4 3 7 7 O 1.21534 * 120.00044 * 179.68426 * 6 5 4 8 8 N 1.34776 * 119.99465 * 359.68810 * 6 5 4 9 9 C 1.46500 * 119.99541 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46740 * 179.97438 * 9 8 6 11 11 C 1.53501 * 114.20620 * 184.99715 * 10 9 8 12 12 N 1.47065 * 87.98741 * 220.15007 * 11 10 9 13 13 C 1.34775 * 136.05752 * 207.08848 * 12 11 10 14 14 O 1.21276 * 119.99984 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00022 * 180.02562 * 13 12 11 16 16 S 1.80998 * 109.47116 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00013 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00250 * 0.02562 * 17 16 15 19 19 C 1.38798 * 120.00102 * 179.72368 * 17 16 15 20 20 N 1.31626 * 120.00155 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00292 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47145 * 60.00107 * 21 19 17 23 23 H 1.48496 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47229 * 300.00299 * 21 19 17 25 25 C 1.47067 * 87.88381 * 27.34024 * 12 11 10 26 26 N 1.28873 * 125.31695 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.47702 * 270.04985 * 1 2 3 28 28 H 1.09004 * 109.46834 * 30.04331 * 1 2 3 29 29 H 1.08999 * 109.47659 * 150.04167 * 1 2 3 30 30 H 0.97004 * 120.00382 * 359.97438 * 8 6 5 31 31 H 1.09000 * 109.47448 * 60.00063 * 9 8 6 32 32 H 1.08992 * 109.47028 * 299.99605 * 9 8 6 33 33 H 1.09001 * 113.28594 * 318.06464 * 10 9 8 34 34 H 1.09001 * 113.46643 * 105.36708 * 11 10 9 35 35 H 1.09004 * 113.51834 * 334.94152 * 11 10 9 36 36 H 1.09001 * 109.47434 * 59.99478 * 15 13 12 37 37 H 1.08999 * 109.47072 * 299.99957 * 15 13 12 38 38 H 0.97004 * 120.00604 * 179.97438 * 20 19 17 39 39 H 1.09010 * 113.46411 * 87.43777 * 25 12 11 40 40 H 1.08997 * 113.47100 * 217.87349 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0503 0.0000 4 7 3.4469 0.6875 0.0067 5 6 3.4685 -0.6542 0.0014 6 6 4.6692 -1.5196 0.0025 7 8 4.5467 -2.7288 0.0030 8 7 5.8983 -0.9667 0.0029 9 6 7.0868 -1.8233 0.0034 10 6 8.3439 -0.9511 0.0032 11 6 9.6560 -1.7384 -0.1183 12 7 10.2392 -0.8183 0.8697 13 6 11.4735 -0.3620 1.1608 14 8 12.4268 -0.7351 0.5106 15 6 11.6692 0.6108 2.2949 16 16 13.4243 1.0307 2.4336 17 6 13.3650 2.1481 3.7946 18 1 12.4204 2.3746 4.2667 19 6 14.5330 2.7326 4.2642 20 7 15.6851 2.4525 3.6924 21 14 14.4701 3.9178 5.7066 22 1 13.9143 3.2221 6.8950 23 1 15.8411 4.4002 6.0111 24 1 13.6047 5.0738 5.3601 25 6 8.8835 -0.6201 1.4043 26 7 2.2099 -1.0516 0.0005 27 1 -0.3635 0.0009 1.0277 28 1 -0.3633 0.8896 -0.5145 29 1 -0.3634 -0.8903 -0.5132 30 1 5.9960 -0.0016 0.0022 31 1 7.0815 -2.4526 -0.8866 32 1 7.0808 -2.4524 0.8933 33 1 8.2735 -0.0938 -0.6663 34 1 10.1162 -1.6657 -1.1038 35 1 9.5811 -2.7662 0.2369 36 1 11.3299 0.1566 3.2259 37 1 11.0930 1.5155 2.1010 38 1 16.5014 2.8612 4.0202 39 1 8.6041 -1.3529 2.1614 40 1 8.6856 0.4054 1.7163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746017936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = 75.485599 kcal Electronic energy + Delta-G solvation = -25138.057941 eV Core-core repulsion = 21118.208073 eV Total energy + Delta-G solvation = -4019.849868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.54988 -41.57509 -40.63883 -39.01802 -36.36987 -35.85007 -34.59279 -34.35163 -32.39588 -30.62979 -29.58359 -27.76593 -27.33535 -26.88207 -25.61783 -24.01434 -22.21793 -22.13359 -20.41355 -19.52215 -19.49032 -18.72745 -18.07177 -17.90787 -17.39277 -16.95354 -16.87268 -16.74841 -16.44064 -15.81288 -15.76910 -15.23461 -14.95765 -14.64933 -14.59425 -14.24347 -14.10284 -14.03075 -13.63651 -13.42495 -13.24208 -13.17561 -13.05638 -12.86819 -12.63123 -12.41800 -12.33383 -12.25274 -11.79617 -11.75280 -11.53222 -11.49167 -11.13372 -10.93533 -10.30349 -10.25226 -9.76568 -8.69009 -8.34898 -6.14103 -0.17165 0.25036 0.79999 1.20896 1.42882 1.44056 1.53450 1.55981 1.71240 1.88387 2.00743 2.27061 2.77605 2.99075 3.02729 3.21773 3.27985 3.63814 3.76731 3.99203 4.06483 4.08879 4.18345 4.24100 4.26055 4.44710 4.50218 4.51514 4.60322 4.62820 4.63591 4.76594 4.80698 4.90686 4.96498 5.11834 5.30719 5.40764 6.18969 6.19046 6.60645 6.82664 7.02120 7.05895 7.10165 8.74135 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.001789 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.540388 B =15643.897633 C =17132.182173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.116 5.116 3 N -0.063 5.063 4 N -0.265 5.265 5 C 0.114 3.886 6 C 0.620 3.380 7 O -0.541 6.541 8 N -0.689 5.689 9 C 0.138 3.862 10 C -0.111 4.111 11 C 0.109 3.891 12 N -0.654 5.654 13 C 0.560 3.440 14 O -0.569 6.569 15 C -0.118 4.118 16 S -0.152 6.152 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.261 1.261 25 C 0.098 3.902 26 N -0.265 5.265 27 H 0.129 0.871 28 H 0.142 0.858 29 H 0.132 0.868 30 H 0.422 0.578 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.272 0.728 39 H 0.108 0.892 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.381 -5.421 -7.575 37.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.031 5.031 3 N -0.057 5.057 4 N -0.139 5.139 5 C -0.170 4.170 6 C 0.400 3.600 7 O -0.415 6.415 8 N -0.342 5.342 9 C 0.015 3.985 10 C -0.131 4.131 11 C -0.014 4.014 12 N -0.390 5.390 13 C 0.349 3.651 14 O -0.448 6.448 15 C -0.269 4.269 16 S 0.076 5.924 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.024 4.024 26 N -0.121 5.121 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.260 0.740 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -35.020 -6.211 -8.486 36.565 hybrid contribution -0.320 1.042 1.453 1.816 sum -35.340 -5.169 -7.033 36.402 Atomic orbital electron populations 1.23256 0.65072 1.09465 1.08679 1.50802 1.12732 0.99482 1.40064 1.78899 0.96269 1.14512 1.15984 1.76102 1.11036 1.09829 1.16969 1.25283 0.93478 0.90541 1.07695 1.16075 0.81295 0.85190 0.77408 1.90862 1.86096 1.14071 1.50501 1.45598 1.03777 1.12210 1.72581 1.21412 0.80299 0.92163 1.04643 1.23100 0.91988 1.00120 0.97863 1.23132 0.89540 0.95107 0.93585 1.49541 1.05799 1.46738 1.36970 1.19599 0.80923 0.80919 0.83665 1.90692 1.40677 1.60511 1.52931 1.23262 1.02542 1.01343 0.99800 1.85587 1.03663 1.58606 1.44578 1.23158 0.97250 1.30839 1.18299 0.89906 1.26138 0.93876 0.98513 1.00553 1.70176 0.99100 1.43369 1.42058 0.84998 0.77781 0.77883 0.77299 1.18647 1.20340 1.18573 1.23565 0.77197 1.04449 0.97184 1.75065 1.02631 1.15579 1.18808 0.85299 0.84016 0.84991 0.74015 0.89063 0.89269 0.85524 0.90490 0.87593 0.87735 0.87507 0.91945 0.87398 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.12 11.62 127.77 1.49 1.36 16 2 N -0.12 -1.31 4.39 -206.59 -0.91 -2.22 16 3 N -0.06 -0.97 13.23 37.02 0.49 -0.48 16 4 N -0.27 -4.72 12.26 -52.36 -0.64 -5.36 16 5 C 0.11 2.11 8.14 137.15 1.12 3.22 16 6 C 0.62 11.30 7.84 86.83 0.68 11.98 16 7 O -0.54 -13.24 17.10 -3.82 -0.07 -13.31 16 8 N -0.69 -8.04 5.55 -465.82 -2.59 -10.63 16 9 C 0.14 1.31 5.59 86.38 0.48 1.80 16 10 C -0.11 -1.18 4.11 -10.37 -0.04 -1.22 16 11 C 0.11 1.88 8.19 83.18 0.68 2.56 16 12 N -0.65 -16.78 3.69 -857.77 -3.16 -19.94 16 13 C 0.56 21.61 8.10 87.66 0.71 22.32 16 14 O -0.57 -27.62 16.64 -3.02 -0.05 -27.67 16 15 C -0.12 -4.85 5.98 71.24 0.43 -4.42 16 16 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 17 C -0.55 -31.55 9.50 67.95 0.65 -30.90 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 21 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 C 0.10 1.43 8.00 83.26 0.67 2.10 16 26 N -0.27 -4.62 12.17 -52.31 -0.64 -5.26 16 27 H 0.13 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H 0.14 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.13 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.42 3.71 8.22 -92.71 -0.76 2.95 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.84 7.81 -2.39 -0.02 0.82 16 33 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.46 8.11 -2.39 -0.02 1.45 16 36 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 37 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.11 1.23 7.88 -2.38 -0.02 1.22 16 40 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -91.59 373.67 1.24 -90.35 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 0.33 Total: 4.47 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 7.32 Total: 10.07 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -7.16 Total: -99.89 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.12 Total: -40.98 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -91.59 1.24 -90.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746017936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.838 kcal (2) G-P(sol) polarization free energy of solvation -91.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds