Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47074 * 2 1 4 4 N 1.46497 * 109.47433 * 240.00353 * 2 1 3 5 5 C 1.36940 * 120.00429 * 84.99476 * 4 2 1 6 6 H 1.08002 * 119.99343 * 0.27530 * 5 4 2 7 7 C 1.38806 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00372 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99683 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47112 * 59.99895 * 9 7 5 11 11 H 1.48498 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47210 * 299.99811 * 9 7 5 13 13 C 1.53000 * 109.47646 * 119.99664 * 2 1 3 14 14 H 1.09010 * 110.88173 * 63.88386 * 13 2 1 15 15 C 1.55154 * 111.00543 * 300.00772 * 13 2 1 16 16 C 1.54327 * 102.94291 * 206.42320 * 15 13 2 17 17 N 1.47020 * 107.26925 * 22.18781 * 16 15 13 18 18 C 1.34780 * 125.64626 * 181.10996 * 17 16 15 19 19 O 1.21560 * 119.99613 * 174.30903 * 18 17 16 20 20 C 1.47786 * 120.00140 * 354.31263 * 18 17 16 21 21 C 1.39626 * 120.11843 * 6.93213 * 20 18 17 22 22 C 1.37900 * 119.91266 * 179.76987 * 21 20 18 23 23 C 1.38476 * 120.15978 * 0.49025 * 22 21 20 24 24 Cl 1.73599 * 119.87494 * 179.76410 * 23 22 21 25 25 C 1.38692 * 120.24679 * 359.78685 * 23 22 21 26 26 F 1.35097 * 119.96175 * 179.97438 * 25 23 22 27 27 C 1.38135 * 120.07810 * 359.95644 * 25 23 22 28 28 C 1.47421 * 108.70669 * 1.06051 * 17 16 15 29 29 H 1.09008 * 109.46872 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47304 * 299.99800 * 1 2 3 31 31 H 1.08995 * 109.47526 * 60.00171 * 1 2 3 32 32 H 0.97008 * 120.00022 * 264.99601 * 4 2 1 33 33 H 0.96998 * 120.00368 * 179.97438 * 8 7 5 34 34 H 1.09006 * 110.71770 * 324.77741 * 15 13 2 35 35 H 1.08991 * 110.72600 * 87.87741 * 15 13 2 36 36 H 1.09001 * 109.88529 * 141.60633 * 16 15 13 37 37 H 1.09002 * 109.87652 * 262.61868 * 16 15 13 38 38 H 1.08003 * 120.04570 * 0.02562 * 21 20 18 39 39 H 1.08003 * 119.91424 * 180.27186 * 22 21 20 40 40 H 1.08004 * 120.08308 * 180.02562 * 27 25 23 41 41 H 1.08997 * 110.37030 * 217.03144 * 28 17 16 42 42 H 1.09004 * 110.36356 * 94.71015 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8963 1.0416 -2.4231 7 6 2.6113 -0.6619 -3.5092 8 7 2.9245 -1.9389 -3.4501 9 14 2.7890 0.2698 -5.1185 10 1 3.7442 1.3924 -4.9377 11 1 3.2970 -0.6488 -6.1689 12 1 1.4664 0.8064 -5.5284 13 6 2.0401 -0.7212 1.2492 14 1 1.7469 -1.7710 1.2387 15 6 1.5426 -0.0178 2.5396 16 6 2.6251 -0.3891 3.5750 17 7 3.8428 -0.7363 2.8279 18 6 5.0095 -1.1376 3.3704 19 8 5.9213 -1.4986 2.6521 20 6 5.1802 -1.1387 4.8383 21 6 4.0930 -0.8645 5.6704 22 6 4.2560 -0.8713 7.0397 23 6 5.4975 -1.1395 7.5912 24 17 5.6958 -1.1402 9.3158 25 6 6.5834 -1.4071 6.7708 26 9 7.7921 -1.6675 7.3150 27 6 6.4302 -1.4081 5.3980 28 6 3.5760 -0.5740 1.3872 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.2491 -1.6317 -1.1526 33 1 3.2472 -2.3964 -4.2423 34 1 1.4990 1.0622 2.3978 35 1 0.5691 -0.4055 2.8394 36 1 2.8207 0.4614 4.2281 37 1 2.2945 -1.2426 4.1669 38 1 3.1246 -0.6514 5.2422 39 1 3.4140 -0.6636 7.6834 40 1 7.2756 -1.6168 4.7591 41 1 4.0843 -1.3517 0.8172 42 1 3.8942 0.4130 1.0513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754798438.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -24.348467 kcal Electronic energy + Delta-G solvation = -26614.013840 eV Core-core repulsion = 22535.578423 eV Total energy + Delta-G solvation = -4078.435417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.35300 -40.81380 -38.96275 -37.81652 -36.93884 -35.39299 -32.73714 -31.59943 -31.31090 -30.54130 -28.71864 -28.14177 -25.11273 -24.15151 -23.40396 -22.66656 -21.66334 -20.17376 -19.72964 -18.25625 -17.35089 -17.11219 -17.03697 -16.37256 -16.15154 -15.83420 -15.40781 -14.91603 -14.50148 -14.41767 -13.97614 -13.88780 -13.77760 -13.43693 -13.31297 -12.92912 -12.86208 -12.76422 -12.22251 -12.20901 -12.10485 -11.87502 -11.58423 -11.41604 -11.12431 -10.89293 -10.84127 -10.61173 -10.60474 -10.26538 -10.08181 -9.91913 -9.64834 -9.54578 -9.20506 -8.92912 -8.68896 -6.98825 -5.77239 -3.06743 0.10413 0.58052 1.47650 2.38694 2.75674 3.27605 3.43549 3.48198 3.49350 3.58968 4.07282 4.13013 4.39443 4.51585 4.57836 4.63411 4.75057 4.79818 5.03915 5.08817 5.23907 5.30298 5.39716 5.43738 5.52236 5.57039 5.66387 5.78732 5.81793 5.85201 5.92499 6.08550 6.10941 6.19694 6.27566 6.34308 6.46597 6.57342 6.80418 7.02320 7.39136 7.68179 8.00003 8.40649 9.52033 10.08216 10.42333 11.45086 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023086 B = 0.002230 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.563379 B =12551.724910 C =13526.482911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.127 4.127 16 C 0.085 3.915 17 N -0.608 5.608 18 C 0.568 3.432 19 O -0.525 6.525 20 C -0.090 4.090 21 C -0.125 4.125 22 C -0.089 4.089 23 C -0.057 4.057 24 Cl -0.047 7.047 25 C 0.103 3.897 26 F -0.123 7.123 27 C -0.086 4.086 28 C 0.118 3.882 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.053 0.947 32 H 0.384 0.616 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.179 0.821 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.088 0.912 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.679 3.147 25.941 26.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.165 4.165 16 C -0.037 4.037 17 N -0.342 5.342 18 C 0.356 3.644 19 O -0.402 6.402 20 C -0.094 4.094 21 C -0.143 4.143 22 C -0.108 4.108 23 C -0.085 4.085 24 Cl -0.018 7.018 25 C 0.083 3.917 26 F -0.101 7.101 27 C -0.106 4.106 28 C -0.003 4.003 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.218 0.782 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.195 0.805 39 H 0.168 0.832 40 H 0.176 0.824 41 H 0.107 0.893 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.014 3.033 25.590 25.769 hybrid contribution 0.424 0.068 -0.572 0.716 sum 0.411 3.101 25.017 25.212 Atomic orbital electron populations 1.22451 0.99047 1.00920 1.00032 1.20143 0.91952 0.95149 0.85309 0.93282 1.42415 1.78178 1.10718 1.05248 1.19140 1.36973 0.93731 0.87291 0.91278 1.24732 1.02028 0.95955 0.98057 1.69640 1.50606 1.08653 1.29014 0.86301 0.77722 0.78650 0.83687 1.21273 1.21735 1.21334 1.22688 0.93478 1.00917 0.95090 0.89854 1.22764 0.97511 1.01875 0.94396 1.22589 0.85646 0.99842 0.95637 1.48427 1.10749 1.65681 1.09304 1.17669 0.81786 0.78156 0.86804 1.90846 1.40162 1.47007 1.62175 1.19890 0.93714 1.01882 0.93885 1.22933 1.01434 0.97111 0.92778 1.21007 0.95279 0.99117 0.95389 1.21311 0.95085 1.06213 0.85905 1.98403 1.97673 1.96793 1.08883 1.17205 0.80578 1.03146 0.90820 1.91568 1.41333 1.91313 1.85913 1.21250 0.98979 0.98063 0.92268 1.22374 0.96227 1.03072 0.78597 0.93491 0.94356 0.92740 0.78245 0.93426 0.90041 0.89682 0.90414 0.90376 0.80485 0.83243 0.82359 0.89348 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.27 37.15 0.34 -2.25 16 2 C 0.18 3.23 2.43 -67.94 -0.16 3.06 16 3 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 4 N -0.72 -16.95 4.97 -53.43 -0.27 -17.22 16 5 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 9 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 C -0.10 -1.42 2.65 -88.47 -0.23 -1.65 16 14 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 15 C -0.13 -1.18 5.29 -24.90 -0.13 -1.32 16 16 C 0.09 0.72 4.87 -3.06 -0.01 0.70 16 17 N -0.61 -7.82 3.33 -176.07 -0.59 -8.41 16 18 C 0.57 8.13 7.81 -12.35 -0.10 8.03 16 19 O -0.52 -9.73 16.60 5.31 0.09 -9.64 16 20 C -0.09 -0.99 5.87 -104.98 -0.62 -1.61 16 21 C -0.12 -0.97 8.61 -39.19 -0.34 -1.31 16 22 C -0.09 -0.62 9.81 -39.62 -0.39 -1.01 16 23 C -0.06 -0.50 6.33 -39.33 -0.25 -0.75 16 24 Cl -0.05 -0.39 28.60 -51.86 -1.48 -1.87 16 25 C 0.10 1.05 7.26 -39.45 -0.29 0.77 16 26 F -0.12 -1.35 16.82 2.25 0.04 -1.31 16 27 C -0.09 -0.94 9.57 -39.12 -0.37 -1.31 16 28 C 0.12 1.84 6.26 -2.53 -0.02 1.83 16 29 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 30 H 0.04 0.47 7.27 -51.93 -0.38 0.09 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.38 9.72 7.80 -40.82 -0.32 9.40 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 35 H 0.08 0.65 8.11 -51.93 -0.42 0.22 16 36 H 0.08 0.49 6.74 -51.93 -0.35 0.14 16 37 H 0.08 0.51 6.74 -51.93 -0.35 0.16 16 38 H 0.18 1.01 2.73 -58.21 -0.16 0.85 16 39 H 0.15 0.63 8.06 -52.48 -0.42 0.20 16 40 H 0.16 1.78 7.67 -52.48 -0.40 1.38 16 41 H 0.09 1.67 7.98 -51.93 -0.41 1.26 16 42 H 0.07 1.23 7.98 -51.93 -0.41 0.81 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -31.91 363.41 -9.12 -41.03 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.28 Total: 5.64 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.81 Total: -3.78 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.13 Total: -52.65 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.91 -9.12 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754798438.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.679 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds