Wall clock time and date at job start Sat Apr 11 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.47415 * 2 1 4 4 N 1.46499 * 109.47243 * 120.00082 * 2 1 3 5 5 C 1.36940 * 120.00322 * 275.27395 * 4 2 1 6 6 H 1.08002 * 119.99453 * 359.72777 * 5 4 2 7 7 C 1.38811 * 120.00240 * 179.72244 * 5 4 2 8 8 N 1.31618 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99905 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47362 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47139 * 120.00173 * 9 7 5 12 12 H 1.48502 * 109.47179 * 240.00399 * 9 7 5 13 13 C 1.53001 * 109.47280 * 240.00372 * 2 1 3 14 14 H 1.09001 * 110.88323 * 291.43832 * 13 2 1 15 15 C 1.55153 * 111.00805 * 167.52017 * 13 2 1 16 16 C 1.54326 * 102.94330 * 206.42399 * 15 13 2 17 17 N 1.47023 * 107.27187 * 22.19038 * 16 15 13 18 18 C 1.34769 * 125.64704 * 181.02932 * 17 16 15 19 19 O 1.21568 * 119.99791 * 185.28436 * 18 17 16 20 20 C 1.47789 * 120.00274 * 5.27971 * 18 17 16 21 21 C 1.39626 * 120.12002 * 351.66270 * 20 18 17 22 22 C 1.37891 * 119.91206 * 179.76594 * 21 20 18 23 23 C 1.38474 * 120.16406 * 0.49095 * 22 21 20 24 24 Cl 1.73598 * 119.88127 * 179.76710 * 23 22 21 25 25 C 1.38698 * 120.24088 * 359.78162 * 23 22 21 26 26 F 1.35103 * 119.95821 * 179.97438 * 25 23 22 27 27 C 1.38130 * 120.08277 * 359.96156 * 25 23 22 28 28 C 1.47428 * 108.70211 * 1.05764 * 17 16 15 29 29 H 1.08998 * 109.47629 * 184.90964 * 1 2 3 30 30 H 1.09004 * 109.47235 * 304.91201 * 1 2 3 31 31 H 1.08997 * 109.47500 * 64.90763 * 1 2 3 32 32 H 0.96998 * 120.00237 * 95.00471 * 4 2 1 33 33 H 0.96989 * 120.00123 * 179.97438 * 8 7 5 34 34 H 1.09010 * 110.72006 * 324.78476 * 15 13 2 35 35 H 1.09000 * 110.72217 * 88.05817 * 15 13 2 36 36 H 1.09004 * 109.87754 * 262.77280 * 16 15 13 37 37 H 1.09002 * 109.88180 * 141.60887 * 16 15 13 38 38 H 1.07996 * 120.03962 * 359.97438 * 21 20 18 39 39 H 1.08004 * 119.91731 * 180.27243 * 22 21 20 40 40 H 1.08004 * 120.07753 * 180.02562 * 27 25 23 41 41 H 1.08997 * 110.36766 * 217.03498 * 28 17 16 42 42 H 1.09005 * 110.45480 * 94.75909 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1438 -0.0089 2.3772 6 1 1.8869 1.0390 2.4257 7 6 2.6010 -0.6647 3.5119 8 7 2.9145 -1.9417 3.4527 9 14 2.7715 0.2651 5.1231 10 1 2.3573 1.6775 4.9258 11 1 1.9059 -0.3650 6.1521 12 1 4.1863 0.2218 5.5723 13 6 2.0399 -0.7212 -1.2493 14 1 1.8185 -1.7873 -1.2001 15 6 3.5586 -0.4766 -1.4516 16 6 3.7353 -0.6418 -2.9758 17 7 2.4216 -0.4130 -3.5949 18 6 2.1511 -0.4857 -4.9132 19 8 1.0481 -0.1829 -5.3250 20 6 3.1954 -0.9334 -5.8582 21 6 4.5080 -1.1145 -5.4177 22 6 5.4779 -1.5370 -6.3020 23 6 5.1557 -1.7723 -7.6280 24 17 6.3839 -2.2982 -8.7364 25 6 3.8552 -1.5891 -8.0740 26 9 3.5472 -1.8198 -9.3690 27 6 2.8745 -1.1712 -7.1956 28 6 1.4492 -0.0901 -2.5348 29 1 -0.3634 -1.0238 0.0879 30 1 -0.3634 0.5882 0.8427 31 1 -0.3634 0.4358 -0.9306 32 1 2.2490 -1.6317 1.1526 33 1 3.2343 -2.3998 4.2455 34 1 3.8321 0.5312 -1.1388 35 1 4.1444 -1.2211 -0.9125 36 1 4.0809 -1.6507 -3.2017 37 1 4.4527 0.0899 -3.3473 38 1 4.7623 -0.9272 -4.3850 39 1 6.4923 -1.6814 -5.9604 40 1 1.8617 -1.0289 -7.5429 41 1 0.4790 -0.5314 -2.7627 42 1 1.3563 0.9898 -2.4191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754798441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:11 Heat of formation + Delta-G solvation = -25.704843 kcal Electronic energy + Delta-G solvation = -26526.202668 eV Core-core repulsion = 22447.708434 eV Total energy + Delta-G solvation = -4078.494234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.38183 -40.87935 -39.00110 -37.87142 -36.95664 -35.43034 -32.75785 -31.62752 -31.30931 -30.57505 -29.26161 -27.49325 -25.48270 -24.03869 -23.52505 -22.65142 -21.57947 -20.31697 -19.70826 -18.29236 -17.38033 -17.19047 -17.04585 -16.43949 -16.17322 -15.98132 -15.51530 -14.95614 -14.51385 -14.24474 -13.98390 -13.95463 -13.63352 -13.45675 -13.37490 -13.16473 -12.95131 -12.52792 -12.40487 -12.24944 -12.11437 -11.89918 -11.69972 -11.39921 -11.16831 -10.94517 -10.83483 -10.66084 -10.40884 -10.23716 -10.19888 -9.91791 -9.70458 -9.57435 -9.22904 -8.97568 -8.80811 -7.02695 -5.82807 -3.11475 0.06836 0.55928 1.46781 2.31790 2.66190 3.20942 3.38815 3.45278 3.46973 3.56260 4.02642 4.11823 4.40746 4.50751 4.60080 4.60620 4.71643 4.91010 5.00862 5.13495 5.17910 5.28647 5.37026 5.43384 5.49311 5.55276 5.62321 5.76939 5.77344 5.86850 5.93563 6.04172 6.11889 6.12827 6.23698 6.37848 6.45795 6.56247 6.80657 7.03222 7.27554 7.65509 7.87338 8.35669 9.47384 10.03705 10.38394 11.39813 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.002151 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.273004 B =13011.064119 C =14012.724653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.084 0.916 15 C -0.120 4.120 16 C 0.082 3.918 17 N -0.606 5.606 18 C 0.571 3.429 19 O -0.533 6.533 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.088 4.088 23 C -0.056 4.056 24 Cl -0.045 7.045 25 C 0.101 3.899 26 F -0.123 7.123 27 C -0.086 4.086 28 C 0.114 3.886 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.080 0.920 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 0.570 -22.221 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.102 0.898 15 C -0.158 4.158 16 C -0.040 4.040 17 N -0.339 5.339 18 C 0.359 3.641 19 O -0.411 6.411 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.107 4.107 23 C -0.084 4.084 24 Cl -0.016 7.016 25 C 0.081 3.919 26 F -0.102 7.102 27 C -0.106 4.106 28 C -0.008 4.008 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.196 0.804 39 H 0.169 0.831 40 H 0.175 0.825 41 H 0.099 0.901 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.577 0.807 -22.519 23.214 hybrid contribution 0.276 -0.054 0.552 0.620 sum 5.853 0.753 -21.967 22.746 Atomic orbital electron populations 1.22531 0.99224 1.01363 0.99868 1.20129 0.91831 0.95146 0.85349 0.93185 1.42390 1.78176 1.10707 1.05057 1.19253 1.36479 0.93876 0.87126 0.91164 1.24719 1.02239 0.95948 0.97993 1.69657 1.51087 1.08616 1.28741 0.86158 0.77282 0.78819 0.84166 1.20584 1.21932 1.21904 1.22678 0.94469 1.01065 0.93988 0.89782 1.22696 0.97305 1.04077 0.91715 1.22716 0.85030 1.00918 0.95331 1.48406 1.11874 1.68257 1.05331 1.17668 0.87164 0.78402 0.80821 1.90808 1.23691 1.49610 1.77029 1.19833 0.94290 1.02017 0.93540 1.22949 0.91497 0.96450 1.03073 1.21038 1.01249 0.98467 0.89948 1.21329 0.89249 1.04715 0.93068 1.98407 1.52789 1.88502 1.61922 1.17199 0.91892 1.03011 0.79772 1.91568 1.93406 1.92043 1.33139 1.21208 1.00185 0.97483 0.91676 1.22422 0.92450 1.00567 0.85335 0.93261 0.92837 0.94264 0.78285 0.93571 0.90000 0.89058 0.90235 0.90339 0.80415 0.83120 0.82451 0.90148 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.30 37.15 0.35 -2.49 16 2 C 0.19 3.24 2.48 -67.94 -0.17 3.07 16 3 H 0.05 0.89 7.92 -51.93 -0.41 0.48 16 4 N -0.72 -16.34 5.06 -53.43 -0.27 -16.61 16 5 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 6 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 9 Si 0.90 21.52 29.55 -169.99 -5.02 16.49 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C -0.10 -1.41 2.69 -88.47 -0.24 -1.65 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.43 6.36 -24.90 -0.16 -1.59 16 16 C 0.08 0.76 4.87 -3.06 -0.01 0.74 16 17 N -0.61 -7.13 3.33 -175.00 -0.58 -7.71 16 18 C 0.57 7.35 7.80 -12.36 -0.10 7.25 16 19 O -0.53 -8.60 16.67 5.31 0.09 -8.51 16 20 C -0.09 -0.97 5.87 -104.97 -0.62 -1.58 16 21 C -0.12 -0.96 8.59 -39.19 -0.34 -1.29 16 22 C -0.09 -0.63 9.81 -39.62 -0.39 -1.02 16 23 C -0.06 -0.49 6.33 -39.32 -0.25 -0.74 16 24 Cl -0.05 -0.38 28.60 -51.86 -1.48 -1.86 16 25 C 0.10 1.00 7.27 -39.45 -0.29 0.71 16 26 F -0.12 -1.29 16.83 2.25 0.04 -1.25 16 27 C -0.09 -0.87 9.57 -39.12 -0.37 -1.25 16 28 C 0.11 1.46 5.01 -2.53 -0.01 1.45 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.55 6.85 -51.93 -0.36 0.19 16 32 H 0.38 9.28 7.80 -40.82 -0.32 8.97 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.08 1.01 7.92 -51.92 -0.41 0.60 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 0.61 6.69 -51.93 -0.35 0.27 16 37 H 0.08 0.56 6.78 -51.93 -0.35 0.21 16 38 H 0.18 1.11 2.78 -56.84 -0.16 0.95 16 39 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.16 1.59 7.67 -52.48 -0.40 1.19 16 41 H 0.08 1.08 7.90 -51.93 -0.41 0.67 16 42 H 0.07 0.93 8.03 -51.93 -0.42 0.52 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -30.36 362.89 -9.12 -39.48 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.24 Total: 5.68 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.84 Total: -5.10 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.13 Total: -50.39 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.36 -9.12 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754798441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.778 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds