Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48498 * 109.47390 * 269.99728 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99847 * 3 2 1 6 6 H 1.48506 * 109.47164 * 149.99622 * 3 2 1 7 7 C 1.37886 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99594 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99968 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99930 * 90.00594 * 10 9 7 12 12 O 1.21282 * 119.99994 * 5.21493 * 11 10 9 13 13 C 1.50693 * 119.99780 * 185.22020 * 11 10 9 14 14 O 1.45206 * 109.47185 * 185.12539 * 13 11 10 15 15 C 1.34679 * 117.00100 * 179.97438 * 14 13 11 16 16 O 1.21426 * 120.00236 * 0.02562 * 15 14 13 17 17 C 1.48073 * 119.99426 * 179.97438 * 15 14 13 18 18 C 1.39348 * 119.72257 * 180.02562 * 17 15 14 19 19 C 1.38592 * 119.05793 * 180.02562 * 18 17 15 20 20 C 1.38621 * 118.48797 * 359.97438 * 19 18 17 21 21 C 1.38581 * 119.35793 * 0.28077 * 20 19 18 22 22 N 1.31513 * 120.90635 * 359.41921 * 21 20 19 23 23 C 1.39925 * 119.99901 * 269.99922 * 10 9 7 24 24 C 1.38881 * 120.06595 * 112.47663 * 23 10 9 25 25 C 1.38112 * 119.92607 * 179.74807 * 24 23 10 26 26 C 1.38287 * 120.07100 * 0.52885 * 25 24 23 27 27 C 1.38281 * 120.14081 * 359.74640 * 26 25 24 28 28 C 1.38115 * 120.07014 * 359.97438 * 27 26 25 29 29 H 0.97005 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47184 * 60.00433 * 9 7 2 31 31 H 1.08994 * 109.47971 * 300.00295 * 9 7 2 32 32 H 1.08998 * 109.47403 * 65.12382 * 13 11 10 33 33 H 1.09002 * 109.47510 * 305.11927 * 13 11 10 34 34 H 1.08007 * 120.47423 * 0.04452 * 18 17 15 35 35 H 1.07994 * 120.75587 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.31994 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.55200 * 179.72149 * 21 20 19 38 38 H 1.08000 * 120.03394 * 0.02562 * 24 23 10 39 39 H 1.08003 * 119.96448 * 180.27704 * 25 24 23 40 40 H 1.07997 * 119.92637 * 179.72292 * 26 25 24 41 41 H 1.08001 * 119.96124 * 180.02562 * 27 26 25 42 42 H 1.08004 * 120.03451 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2240 -3.2109 -1.1671 12 8 4.1128 -2.6111 -2.2153 13 6 4.6127 -4.6669 -1.1696 14 8 4.9146 -5.0849 -2.5270 15 6 5.2823 -6.3684 -2.7040 16 8 5.3487 -7.1179 -1.7510 17 6 5.6046 -6.8656 -4.0610 18 6 5.9840 -8.1948 -4.2377 19 6 6.2831 -8.6454 -5.5138 20 6 6.1920 -7.7512 -6.5691 21 6 5.8133 -6.4418 -6.3193 22 7 5.5294 -6.0418 -5.0991 23 6 4.2334 -3.2347 1.2119 24 6 3.4350 -4.3080 1.5853 25 6 3.6715 -4.9600 2.7797 26 6 4.6950 -4.5383 3.6085 27 6 5.4881 -3.4663 3.2422 28 6 5.2604 -2.8137 2.0465 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8746 -0.6809 -0.8904 32 1 3.7880 -5.2638 -0.7805 33 1 5.4923 -4.8092 -0.5416 34 1 6.0438 -8.8644 -3.3924 35 1 6.5797 -9.6701 -5.6822 36 1 6.4179 -8.0709 -7.5756 37 1 5.7456 -5.7413 -7.1386 38 1 2.6329 -4.6352 0.9403 39 1 3.0538 -5.7975 3.0686 40 1 4.8750 -5.0470 4.5440 41 1 6.2869 -3.1397 3.8915 42 1 5.8805 -1.9768 1.7608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005693332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -31.919914 kcal Electronic energy + Delta-G solvation = -28288.563683 eV Core-core repulsion = 24199.860003 eV Total energy + Delta-G solvation = -4088.703679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03063 -40.18323 -39.53390 -38.16495 -36.43759 -34.97058 -33.02276 -32.66104 -31.90552 -30.83770 -29.87637 -29.10932 -27.21563 -25.18266 -23.87870 -22.77608 -22.56040 -22.03436 -21.34021 -19.26306 -18.53555 -17.61794 -17.08493 -17.01546 -16.62681 -16.29754 -16.24871 -15.96142 -15.43652 -15.14851 -14.93439 -14.45120 -14.28185 -14.11127 -13.75877 -13.59613 -13.37530 -13.22381 -12.74125 -12.63631 -12.45763 -12.37493 -12.24677 -11.83780 -11.38100 -11.18525 -10.98255 -10.88353 -10.67659 -10.58651 -10.37106 -10.24116 -9.86655 -9.63311 -9.61014 -9.51678 -8.76092 -8.69133 -8.59895 -7.81020 -6.11485 -4.11272 0.19008 0.84543 1.46708 1.57637 2.21477 2.24339 3.03654 3.28075 3.33481 3.35586 3.49806 3.53202 3.92196 3.97779 4.37153 4.41424 4.51444 4.56912 4.60831 4.70282 4.97538 5.08383 5.12501 5.16942 5.21743 5.24561 5.30870 5.32307 5.55633 5.60836 5.65802 5.74756 5.91746 6.13307 6.18848 6.21954 6.50320 6.61395 6.66953 6.68535 6.85771 7.00068 7.22163 7.31823 7.53119 7.68425 8.04652 8.39930 8.68733 8.90564 9.47006 11.01634 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003239 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.413024 B = 8641.423921 C =10562.198902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.551 5.551 11 C 0.520 3.480 12 O -0.499 6.499 13 C 0.049 3.951 14 O -0.304 6.304 15 C 0.521 3.479 16 O -0.499 6.499 17 C 0.096 3.904 18 C -0.107 4.107 19 C -0.085 4.085 20 C -0.143 4.143 21 C 0.098 3.902 22 N -0.428 5.428 23 C 0.151 3.849 24 C -0.122 4.122 25 C -0.106 4.106 26 C -0.130 4.130 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.266 0.734 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.152 0.848 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.079 -17.645 -4.151 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.571 4.571 8 H 0.094 0.906 9 C 0.101 3.899 10 N -0.281 5.281 11 C 0.305 3.695 12 O -0.373 6.373 13 C -0.029 4.029 14 O -0.217 6.217 15 C 0.364 3.636 16 O -0.387 6.387 17 C -0.041 4.041 18 C -0.127 4.127 19 C -0.111 4.111 20 C -0.163 4.163 21 C -0.062 4.062 22 N -0.139 5.139 23 C 0.059 3.941 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.169 0.831 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.581 -16.459 -4.278 22.401 hybrid contribution 0.345 0.039 0.088 0.358 sum 14.926 -16.420 -4.190 22.582 Atomic orbital electron populations 1.69883 1.06169 1.27092 1.50040 1.24808 0.94773 0.98886 0.94264 0.86876 0.80237 0.83795 0.78996 1.19704 1.20923 1.18996 1.21245 0.88765 0.95077 1.51988 0.90566 1.19859 0.96059 0.75953 0.98050 1.45489 1.64387 1.15992 1.02233 1.19681 0.78421 0.87192 0.84162 1.90745 1.49397 1.66906 1.30203 1.22986 1.03261 0.95301 0.81309 1.86721 1.76711 1.27131 1.31141 1.20847 0.73813 0.80683 0.88266 1.90850 1.49209 1.57242 1.41390 1.20042 1.01926 0.91133 0.90964 1.22124 0.96337 0.95035 0.99185 1.21621 0.96999 1.00700 0.91771 1.22523 0.98232 0.94807 1.00727 1.22996 0.94653 0.94663 0.93881 1.67754 1.09952 1.36821 0.99328 1.17763 0.94438 0.93786 0.88089 1.21426 0.98327 0.96920 0.97447 1.21010 0.97768 0.99724 0.93953 1.21107 0.96418 0.97581 0.99688 1.20971 0.99754 0.96050 0.96047 1.21275 0.97202 1.00800 0.95114 0.92441 0.94601 0.93786 0.87909 0.88445 0.83071 0.83630 0.83840 0.81529 0.85612 0.85819 0.86167 0.85929 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.22 5.43 4.22 -5.19 -0.02 5.41 16 10 N -0.55 -11.81 2.51 -114.74 -0.29 -12.09 16 11 C 0.52 11.22 7.65 -10.99 -0.08 11.14 16 12 O -0.50 -12.77 16.06 -14.05 -0.23 -12.99 16 13 C 0.05 0.85 4.47 36.00 0.16 1.01 16 14 O -0.30 -5.56 9.58 -47.10 -0.45 -6.01 16 15 C 0.52 8.22 7.95 34.77 0.28 8.50 16 16 O -0.50 -7.98 16.11 -19.21 -0.31 -8.29 16 17 C 0.10 1.28 6.75 -83.03 -0.56 0.72 16 18 C -0.11 -1.02 9.63 -39.04 -0.38 -1.39 16 19 C -0.09 -0.56 10.17 -39.31 -0.40 -0.96 16 20 C -0.14 -0.92 10.11 -39.31 -0.40 -1.31 16 21 C 0.10 0.91 11.18 -17.56 -0.20 0.71 16 22 N -0.43 -5.86 10.12 -9.81 -0.10 -5.96 16 23 C 0.15 2.72 4.43 -83.69 -0.37 2.34 16 24 C -0.12 -1.99 8.45 -39.39 -0.33 -2.32 16 25 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 26 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 28 C -0.12 -1.92 9.66 -39.39 -0.38 -2.30 16 29 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.04 0.85 6.90 -51.92 -0.36 0.49 16 31 H 0.04 1.14 6.78 -51.93 -0.35 0.79 16 32 H 0.10 1.66 6.89 -51.93 -0.36 1.31 16 33 H 0.10 1.50 7.86 -51.93 -0.41 1.10 16 34 H 0.15 1.26 7.64 -52.48 -0.40 0.85 16 35 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 38 H 0.13 2.09 7.55 -52.49 -0.40 1.70 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -36.98 373.16 -8.78 -45.76 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -4.82 Total: 1.54 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -4.32 Total: 2.34 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.39 Total: -44.89 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.99 Total: -27.29 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.98 -8.78 -45.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005693332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.842 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds