Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48498 * 109.47390 * 269.99728 * 3 2 1 5 5 H 1.48503 * 109.47061 * 29.99847 * 3 2 1 6 6 H 1.48506 * 109.47164 * 149.99622 * 3 2 1 7 7 C 1.37886 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99594 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99968 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.46789 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99930 * 90.00594 * 10 9 7 12 12 O 1.21282 * 119.99994 * 5.21493 * 11 10 9 13 13 C 1.50693 * 119.99780 * 185.22020 * 11 10 9 14 14 O 1.45206 * 109.47185 * 185.12539 * 13 11 10 15 15 C 1.34679 * 117.00100 * 179.97438 * 14 13 11 16 16 O 1.21426 * 120.00236 * 0.02562 * 15 14 13 17 17 C 1.48073 * 119.99426 * 179.97438 * 15 14 13 18 18 C 1.39348 * 119.72257 * 180.02562 * 17 15 14 19 19 C 1.38592 * 119.05793 * 180.02562 * 18 17 15 20 20 C 1.38621 * 118.48797 * 359.97438 * 19 18 17 21 21 C 1.38581 * 119.35793 * 0.28077 * 20 19 18 22 22 N 1.31513 * 120.90635 * 359.41921 * 21 20 19 23 23 C 1.39925 * 119.99901 * 269.99922 * 10 9 7 24 24 C 1.38881 * 120.06595 * 112.47663 * 23 10 9 25 25 C 1.38112 * 119.92607 * 179.74807 * 24 23 10 26 26 C 1.38287 * 120.07100 * 0.52885 * 25 24 23 27 27 C 1.38281 * 120.14081 * 359.74640 * 26 25 24 28 28 C 1.38115 * 120.07014 * 359.97438 * 27 26 25 29 29 H 0.97005 * 120.00041 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47184 * 60.00433 * 9 7 2 31 31 H 1.08994 * 109.47971 * 300.00295 * 9 7 2 32 32 H 1.08998 * 109.47403 * 65.12382 * 13 11 10 33 33 H 1.09002 * 109.47510 * 305.11927 * 13 11 10 34 34 H 1.08007 * 120.47423 * 0.04452 * 18 17 15 35 35 H 1.07994 * 120.75587 * 180.02562 * 19 18 17 36 36 H 1.07997 * 120.31994 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.55200 * 179.72149 * 21 20 19 38 38 H 1.08000 * 120.03394 * 0.02562 * 24 23 10 39 39 H 1.08003 * 119.96448 * 180.27704 * 25 24 23 40 40 H 1.07997 * 119.92637 * 179.72292 * 26 25 24 41 41 H 1.08001 * 119.96124 * 180.02562 * 27 26 25 42 42 H 1.08004 * 120.03451 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 4.2240 -3.2109 -1.1671 12 8 4.1128 -2.6111 -2.2153 13 6 4.6127 -4.6669 -1.1696 14 8 4.9146 -5.0849 -2.5270 15 6 5.2823 -6.3684 -2.7040 16 8 5.3487 -7.1179 -1.7510 17 6 5.6046 -6.8656 -4.0610 18 6 5.9840 -8.1948 -4.2377 19 6 6.2831 -8.6454 -5.5138 20 6 6.1920 -7.7512 -6.5691 21 6 5.8133 -6.4418 -6.3193 22 7 5.5294 -6.0418 -5.0991 23 6 4.2334 -3.2347 1.2119 24 6 3.4350 -4.3080 1.5853 25 6 3.6715 -4.9600 2.7797 26 6 4.6950 -4.5383 3.6085 27 6 5.4881 -3.4663 3.2422 28 6 5.2604 -2.8137 2.0465 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8746 -0.6809 -0.8904 32 1 3.7880 -5.2638 -0.7805 33 1 5.4923 -4.8092 -0.5416 34 1 6.0438 -8.8644 -3.3924 35 1 6.5797 -9.6701 -5.6822 36 1 6.4179 -8.0709 -7.5756 37 1 5.7456 -5.7413 -7.1386 38 1 2.6329 -4.6352 0.9403 39 1 3.0538 -5.7975 3.0686 40 1 4.8750 -5.0470 4.5440 41 1 6.2869 -3.1397 3.8915 42 1 5.8805 -1.9768 1.7608 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005693332.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -55.323654 kcal Electronic energy + Delta-G solvation = -28289.578545 eV Core-core repulsion = 24199.860003 eV Total energy + Delta-G solvation = -4089.718542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15766 -41.48935 -40.59765 -39.56232 -37.75091 -36.63799 -34.82312 -33.71102 -32.69931 -32.04200 -31.50333 -30.45307 -28.94247 -26.19077 -24.64579 -24.42969 -23.86565 -23.36556 -22.43867 -20.76268 -19.63630 -19.18983 -18.90853 -18.18841 -18.00450 -17.53561 -17.20296 -16.98779 -16.79710 -16.62780 -16.09451 -15.77828 -15.58058 -15.39297 -14.94775 -14.84573 -14.51280 -14.35668 -14.14040 -14.03147 -13.98805 -13.81875 -13.53616 -13.24644 -12.95907 -12.62103 -12.39016 -12.26802 -12.15251 -12.08111 -11.98362 -11.79066 -11.22684 -11.03615 -10.88057 -10.61081 -10.35474 -10.21432 -9.87922 -9.33620 -8.38743 -6.45309 -0.61514 0.21137 0.27565 0.45458 0.99703 1.18759 1.29954 1.34288 1.35161 1.42294 2.09373 2.27076 2.73547 2.79474 2.95025 3.01612 3.22827 3.64004 3.79501 3.81792 3.85838 3.96236 4.02673 4.04225 4.07414 4.28812 4.39636 4.51553 4.55275 4.62297 4.69280 4.74879 4.80755 4.90933 5.04123 5.09480 5.10531 5.28601 5.33181 5.48533 5.56508 5.58423 5.62260 5.98407 6.13858 6.23455 6.43845 6.54563 6.81925 6.97839 7.18929 8.78120 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.003239 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.413024 B = 8641.423921 C =10562.198902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.238 1.238 7 C -0.542 4.542 8 H 0.029 0.971 9 C 0.229 3.771 10 N -0.551 5.551 11 C 0.513 3.487 12 O -0.554 6.554 13 C 0.064 3.936 14 O -0.330 6.330 15 C 0.518 3.482 16 O -0.511 6.511 17 C 0.055 3.945 18 C -0.102 4.102 19 C -0.076 4.076 20 C -0.118 4.118 21 C 0.082 3.918 22 N -0.480 5.480 23 C 0.110 3.890 24 C -0.141 4.141 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.101 4.101 28 C -0.132 4.132 29 H 0.270 0.730 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.160 0.840 35 H 0.190 0.810 36 H 0.189 0.811 37 H 0.186 0.814 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.037 -19.450 -3.306 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.161 1.161 7 C -0.580 4.580 8 H 0.047 0.953 9 C 0.109 3.891 10 N -0.279 5.279 11 C 0.301 3.699 12 O -0.431 6.431 13 C -0.013 4.013 14 O -0.245 6.245 15 C 0.362 3.638 16 O -0.399 6.399 17 C -0.079 4.079 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.078 4.078 22 N -0.192 5.192 23 C 0.020 3.980 24 C -0.160 4.160 25 C -0.123 4.123 26 C -0.133 4.133 27 C -0.119 4.119 28 C -0.152 4.152 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.178 0.822 35 H 0.208 0.792 36 H 0.207 0.793 37 H 0.203 0.797 38 H 0.124 0.876 39 H 0.167 0.833 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 17.560 -18.315 -3.376 25.596 hybrid contribution -0.591 0.401 -0.208 0.744 sum 16.968 -17.914 -3.584 24.934 Atomic orbital electron populations 1.70033 1.08168 1.28512 1.51333 1.25812 0.95719 1.03254 0.93531 0.85748 0.79942 0.78264 0.79286 1.19758 1.19606 1.16094 1.21433 0.91034 0.93533 1.51993 0.95251 1.19517 0.93255 0.78421 0.97905 1.45372 1.63609 1.15082 1.03837 1.20394 0.77352 0.88680 0.83511 1.90693 1.52046 1.68388 1.32004 1.22771 1.04285 0.92325 0.81898 1.86727 1.77431 1.29095 1.31223 1.21504 0.73063 0.79534 0.89730 1.90804 1.50029 1.57007 1.42069 1.19948 1.05591 0.92763 0.89636 1.22347 0.95390 0.93313 1.01169 1.22166 0.95153 1.02620 0.90143 1.23010 0.94833 0.93049 1.02801 1.23502 0.94631 0.96843 0.92838 1.67594 1.12033 1.38567 1.00994 1.18062 0.96928 0.95319 0.87678 1.21424 0.98254 0.97498 0.98866 1.21345 0.98446 0.99929 0.92620 1.21615 0.94572 0.96678 1.00402 1.21410 1.00225 0.95283 0.94966 1.21439 0.96609 1.01344 0.95784 0.92048 0.92777 0.95188 0.87202 0.86317 0.82223 0.79246 0.79328 0.79725 0.87621 0.83285 0.82052 0.82185 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 2 C 0.02 0.94 5.47 84.66 0.46 1.40 16 3 Si 0.95 45.23 27.47 68.60 1.88 47.12 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.30 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.54 -33.08 9.94 25.60 0.25 -32.83 16 8 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 9 C 0.23 11.80 4.22 85.63 0.36 12.16 16 10 N -0.55 -24.94 2.51 -635.31 -1.59 -26.53 16 11 C 0.51 23.87 7.65 87.65 0.67 24.54 16 12 O -0.55 -30.69 16.06 15.71 0.25 -30.43 16 13 C 0.06 2.41 4.47 71.23 0.32 2.73 16 14 O -0.33 -13.10 9.58 -49.51 -0.47 -13.57 16 15 C 0.52 17.38 7.95 70.43 0.56 17.94 16 16 O -0.51 -16.98 16.11 20.08 0.32 -16.65 16 17 C 0.06 1.53 6.75 41.89 0.28 1.81 16 18 C -0.10 -1.83 9.63 22.62 0.22 -1.62 16 19 C -0.08 -0.73 10.17 22.45 0.23 -0.51 16 20 C -0.12 -1.10 10.11 22.44 0.23 -0.87 16 21 C 0.08 1.45 11.18 84.82 0.95 2.40 16 22 N -0.48 -13.74 10.12 -184.95 -1.87 -15.61 16 23 C 0.11 4.07 4.43 38.15 0.17 4.24 16 24 C -0.14 -4.74 8.45 22.39 0.19 -4.56 16 25 C -0.11 -2.63 10.04 22.25 0.22 -2.41 16 26 C -0.11 -2.35 10.04 22.29 0.22 -2.12 16 27 C -0.10 -2.21 10.04 22.25 0.22 -1.99 16 28 C -0.13 -3.94 9.66 22.39 0.22 -3.72 16 29 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 30 H 0.05 2.57 6.90 -2.38 -0.02 2.55 16 31 H 0.03 1.62 6.78 -2.39 -0.02 1.61 16 32 H 0.11 3.89 6.89 -2.39 -0.02 3.88 16 33 H 0.12 3.85 7.86 -2.39 -0.02 3.84 16 34 H 0.16 2.48 7.64 -2.91 -0.02 2.45 16 35 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 36 H 0.19 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.11 3.86 7.55 -2.91 -0.02 3.84 16 39 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -89.68 373.16 5.59 -84.09 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.99 Total: 15.27 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 5.78 Total: 16.60 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -3.17 Total: -102.42 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: 0.10 Total: -60.66 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -89.68 5.59 -84.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005693332.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.768 kcal (2) G-P(sol) polarization free energy of solvation -89.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds