Wall clock time and date at job start Sat Apr 11 2020 05:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35887 * 117.00444 * 2 1 4 4 C 1.39852 * 119.56252 * 0.02562 * 3 2 1 5 5 C 1.35989 * 120.92947 * 180.02562 * 4 3 2 6 6 C 1.40586 * 119.73337 * 359.97438 * 5 4 3 7 7 C 1.40518 * 121.22443 * 179.97438 * 6 5 4 8 8 C 1.36105 * 119.67437 * 180.02562 * 7 6 5 9 9 C 1.50701 * 119.50327 * 179.97438 * 8 7 6 10 10 C 1.53000 * 110.53765 * 268.63002 * 9 8 7 11 11 N 1.47310 * 110.59914 * 31.45988 * 9 8 7 12 12 C 1.34526 * 106.62304 * 118.52521 * 11 9 8 13 13 O 1.21524 * 123.77162 * 179.97438 * 12 11 9 14 14 N 1.33787 * 112.45369 * 0.02562 * 12 11 9 15 15 C 1.37516 * 124.17405 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99889 * 327.08356 * 15 14 12 17 17 C 1.38897 * 120.00079 * 147.08485 * 15 14 12 18 18 N 1.31382 * 119.99610 * 340.12268 * 17 15 14 19 19 Si 1.86795 * 120.00046 * 160.12270 * 17 15 14 20 20 H 1.48501 * 109.46922 * 60.00165 * 19 17 15 21 21 H 1.48506 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47449 * 300.00222 * 19 17 15 23 23 C 1.34764 * 111.64867 * 0.02562 * 14 12 11 24 24 O 1.21233 * 127.15893 * 180.02562 * 23 14 12 25 25 C 1.39371 * 120.99541 * 0.02737 * 8 7 6 26 26 C 1.36087 * 120.97971 * 359.97438 * 25 8 7 27 27 C 1.40578 * 119.65926 * 359.97438 * 26 25 8 28 28 C 1.36564 * 119.56932 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46572 * 60.00053 * 1 2 3 30 30 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46675 * 300.00312 * 1 2 3 32 32 H 1.08000 * 119.54022 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.13064 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.16400 * 359.97438 * 7 6 5 35 35 H 1.08993 * 109.47476 * 59.99612 * 10 9 8 36 36 H 1.08999 * 109.47365 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46514 * 299.99609 * 10 9 8 38 38 H 0.97004 * 126.68757 * 298.56087 * 11 9 8 39 39 H 0.97006 * 119.99251 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.50914 * 179.97438 * 25 8 7 41 41 H 1.08005 * 120.17389 * 179.97438 * 26 25 8 42 42 H 1.07994 * 120.19180 * 359.72463 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2755 2.3778 0.0005 5 6 1.8639 3.6038 0.0000 6 6 3.2662 3.7042 -0.0005 7 6 3.9069 4.9548 -0.0016 8 6 5.2666 5.0153 -0.0026 9 6 5.9498 6.3586 -0.0043 10 6 6.2226 6.8201 -1.4373 11 7 5.1368 7.3544 0.7150 12 6 5.8778 7.7773 1.7551 13 8 5.5021 8.6078 2.5588 14 7 7.0749 7.1820 1.8052 15 6 8.0236 7.4348 2.7681 16 1 8.1103 8.4235 3.1943 17 6 8.8703 6.4189 3.1925 18 7 8.5410 5.1628 2.9924 19 14 10.4771 6.8383 4.0478 20 1 10.1927 7.6087 5.2851 21 1 11.1928 5.5854 4.3989 22 1 11.3228 7.6543 3.1400 23 6 7.2366 6.3048 0.7950 24 8 8.2084 5.6150 0.5727 25 6 6.0367 3.8537 -0.0032 26 6 5.4513 2.6251 -0.0022 27 6 4.0492 2.5227 -0.0001 28 6 3.4103 1.2718 0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.1980 2.3045 0.0005 33 1 1.2563 4.4967 0.0000 34 1 3.3233 5.8636 -0.0024 35 1 5.2800 6.9020 -1.9784 36 1 6.7166 7.7916 -1.4183 37 1 6.8661 6.0953 -1.9361 38 1 4.2415 7.6477 0.4840 39 1 9.1325 4.4533 3.2885 40 1 7.1140 3.9296 -0.0044 41 1 6.0606 1.7334 -0.0031 42 1 3.9946 0.3636 0.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008890983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:58 Heat of formation + Delta-G solvation = -20.227691 kcal Electronic energy + Delta-G solvation = -29482.483856 eV Core-core repulsion = 25394.287190 eV Total energy + Delta-G solvation = -4088.196667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.53386 -40.47760 -38.86317 -37.21591 -36.14202 -34.79179 -34.10755 -32.58466 -31.65292 -30.45113 -29.56189 -28.79743 -27.02819 -25.86467 -24.17671 -23.14065 -22.36180 -21.94678 -20.76292 -20.12735 -18.29839 -17.61838 -17.14813 -16.78730 -16.22425 -15.89488 -15.71359 -15.20383 -15.15123 -14.79337 -14.57190 -14.27866 -13.98085 -13.81037 -13.62670 -13.44833 -13.22731 -13.05020 -12.74546 -12.54631 -12.41488 -12.08336 -11.99183 -11.82415 -11.66339 -11.40610 -11.16153 -11.02214 -10.82144 -10.64934 -10.51562 -10.41506 -9.68177 -9.65631 -9.28645 -8.80538 -8.73888 -8.23981 -7.96851 -7.55306 -6.42652 -4.19067 0.63923 1.12435 2.17896 2.89586 3.07748 3.15577 3.22517 3.26703 3.28499 3.53497 4.09658 4.25122 4.37901 4.47791 4.56942 4.73204 4.79855 4.83111 4.91299 5.01637 5.09154 5.18709 5.19838 5.23732 5.40778 5.43987 5.47664 5.53247 5.75375 5.84950 5.88643 5.95075 6.06319 6.23158 6.25469 6.32983 6.37278 6.58153 6.67536 6.82989 6.85204 7.14778 7.30008 7.43478 7.58336 7.94459 8.18029 8.71013 9.00411 9.18148 9.76905 10.66517 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003306 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.945909 B = 8466.402524 C = 9120.219964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.198 4.198 5 C -0.061 4.061 6 C -0.082 4.082 7 C -0.084 4.084 8 C -0.074 4.074 9 C 0.154 3.846 10 C -0.135 4.135 11 N -0.738 5.738 12 C 0.679 3.321 13 O -0.569 6.569 14 N -0.403 5.403 15 C -0.354 4.354 16 H 0.103 0.897 17 C 0.059 3.941 18 N -0.823 5.823 19 Si 0.931 3.069 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.503 3.497 24 O -0.458 6.458 25 C -0.075 4.075 26 C -0.119 4.119 27 C -0.010 4.010 28 C -0.150 4.150 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.420 0.580 39 H 0.273 0.727 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 -7.585 -10.329 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.216 4.216 5 C -0.079 4.079 6 C -0.082 4.082 7 C -0.102 4.102 8 C -0.075 4.075 9 C 0.063 3.937 10 C -0.193 4.193 11 N -0.403 5.403 12 C 0.383 3.617 13 O -0.447 6.447 14 N -0.135 5.135 15 C -0.480 4.480 16 H 0.121 0.879 17 C -0.153 4.153 18 N -0.455 5.455 19 Si 0.756 3.244 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.195 1.195 23 C 0.289 3.711 24 O -0.329 6.329 25 C -0.093 4.093 26 C -0.137 4.137 27 C -0.010 4.010 28 C -0.169 4.169 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.786 -7.901 -9.894 17.995 hybrid contribution -0.175 0.270 0.466 0.566 sum -12.961 -7.631 -9.428 17.752 Atomic orbital electron populations 1.23020 0.78758 1.03706 1.01235 1.86078 1.21117 1.27114 1.89111 1.18610 0.92158 0.83946 0.97747 1.20933 0.99908 0.92431 1.08358 1.20848 0.93403 0.97243 0.96403 1.17930 0.93108 0.93023 1.04188 1.20620 0.93797 0.96220 0.99564 1.19288 0.93448 0.93694 1.01072 1.20260 0.91548 0.87035 0.94888 1.21882 1.02568 1.02433 0.92420 1.45642 1.18855 1.45089 1.30720 1.16407 0.81354 0.82562 0.81370 1.90816 1.74509 1.35975 1.43369 1.41772 1.12516 1.35696 1.23488 1.19319 1.11171 0.97773 1.19716 0.87933 1.25316 0.99796 0.94239 0.95942 1.69917 1.35752 0.99093 1.40762 0.85958 0.81159 0.77950 0.79304 1.19696 1.20744 1.19530 1.19845 0.87288 0.82801 0.81122 1.90546 1.33092 1.40097 1.69178 1.21255 1.02388 0.91096 0.94565 1.20909 0.92608 0.98092 1.02119 1.17812 0.93646 0.91656 0.97886 1.20138 0.91529 0.97569 1.07670 0.92781 0.88450 0.92737 0.85573 0.85293 0.85917 0.91449 0.91325 0.90322 0.73740 0.91648 0.83228 0.85341 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.80 101.05 0.99 1.19 16 2 O -0.32 -3.70 10.47 -19.38 -0.20 -3.90 16 3 C 0.12 1.53 6.63 -39.58 -0.26 1.27 16 4 C -0.20 -2.23 8.93 -39.79 -0.36 -2.59 16 5 C -0.06 -0.73 9.76 -39.50 -0.39 -1.12 16 6 C -0.08 -1.21 5.74 -106.81 -0.61 -1.82 16 7 C -0.08 -1.26 9.04 -39.49 -0.36 -1.62 16 8 C -0.07 -1.28 4.85 -104.97 -0.51 -1.79 16 9 C 0.15 2.84 1.15 -133.25 -0.15 2.68 16 10 C -0.13 -1.96 8.97 37.16 0.33 -1.62 16 11 N -0.74 -13.60 5.26 -54.03 -0.28 -13.88 16 12 C 0.68 16.47 8.57 -88.02 -0.75 15.72 16 13 O -0.57 -15.31 17.62 5.34 0.09 -15.22 16 14 N -0.40 -10.60 2.69 -65.57 -0.18 -10.78 16 15 C -0.35 -9.98 9.46 -14.76 -0.14 -10.12 16 16 H 0.10 2.87 7.91 -52.48 -0.41 2.46 16 17 C 0.06 1.61 4.82 -17.50 -0.08 1.52 16 18 N -0.82 -23.16 11.20 55.49 0.62 -22.53 16 19 Si 0.93 21.08 29.60 -169.99 -5.03 16.05 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.50 12.05 5.79 -10.56 -0.06 11.99 16 24 O -0.46 -11.83 13.28 5.60 0.07 -11.75 16 25 C -0.07 -1.35 9.08 -39.93 -0.36 -1.72 16 26 C -0.12 -1.90 9.77 -39.47 -0.39 -2.29 16 27 C -0.01 -0.15 5.74 -106.84 -0.61 -0.76 16 28 C -0.15 -2.07 9.68 -39.35 -0.38 -2.46 16 29 H 0.05 0.33 7.63 -51.93 -0.40 -0.07 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.35 7.63 -51.93 -0.40 -0.05 16 32 H 0.13 1.06 6.21 -52.49 -0.33 0.73 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.54 6.86 -52.49 -0.36 1.18 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.42 6.14 8.05 -40.82 -0.33 5.81 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.15 3.01 5.71 -52.49 -0.30 2.71 16 41 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -34.28 354.27 -8.28 -42.55 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.62 Total: 7.66 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -4.09 Total: 6.47 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.16 Total: -47.19 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.03 Total: -30.87 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.28 -8.28 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008890983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.326 kcal (2) G-P(sol) polarization free energy of solvation -34.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds