Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35887 * 117.00444 * 2 1 4 4 C 1.39852 * 119.56252 * 0.02562 * 3 2 1 5 5 C 1.35989 * 120.92947 * 180.02562 * 4 3 2 6 6 C 1.40586 * 119.73337 * 359.97438 * 5 4 3 7 7 C 1.40518 * 121.22443 * 179.97438 * 6 5 4 8 8 C 1.36105 * 119.67437 * 180.02562 * 7 6 5 9 9 C 1.50701 * 119.50327 * 179.97438 * 8 7 6 10 10 C 1.53000 * 110.53765 * 268.63002 * 9 8 7 11 11 N 1.47310 * 110.59914 * 31.45988 * 9 8 7 12 12 C 1.34526 * 106.62304 * 118.52521 * 11 9 8 13 13 O 1.21524 * 123.77162 * 179.97438 * 12 11 9 14 14 N 1.33787 * 112.45369 * 0.02562 * 12 11 9 15 15 C 1.37516 * 124.17405 * 179.97438 * 14 12 11 16 16 H 1.08006 * 119.99889 * 327.08356 * 15 14 12 17 17 C 1.38897 * 120.00079 * 147.08485 * 15 14 12 18 18 N 1.31382 * 119.99610 * 340.12268 * 17 15 14 19 19 Si 1.86795 * 120.00046 * 160.12270 * 17 15 14 20 20 H 1.48501 * 109.46922 * 60.00165 * 19 17 15 21 21 H 1.48506 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47449 * 300.00222 * 19 17 15 23 23 C 1.34764 * 111.64867 * 0.02562 * 14 12 11 24 24 O 1.21233 * 127.15893 * 180.02562 * 23 14 12 25 25 C 1.39371 * 120.99541 * 0.02737 * 8 7 6 26 26 C 1.36087 * 120.97971 * 359.97438 * 25 8 7 27 27 C 1.40578 * 119.65926 * 359.97438 * 26 25 8 28 28 C 1.36564 * 119.56932 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46572 * 60.00053 * 1 2 3 30 30 H 1.08996 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46675 * 300.00312 * 1 2 3 32 32 H 1.08000 * 119.54022 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.13064 * 179.97438 * 5 4 3 34 34 H 1.07998 * 120.16400 * 359.97438 * 7 6 5 35 35 H 1.08993 * 109.47476 * 59.99612 * 10 9 8 36 36 H 1.08999 * 109.47365 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46514 * 299.99609 * 10 9 8 38 38 H 0.97004 * 126.68757 * 298.56087 * 11 9 8 39 39 H 0.97006 * 119.99251 * 179.97438 * 18 17 15 40 40 H 1.07999 * 119.50914 * 179.97438 * 25 8 7 41 41 H 1.08005 * 120.17389 * 179.97438 * 26 25 8 42 42 H 1.07994 * 120.19180 * 359.72463 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2755 2.3778 0.0005 5 6 1.8639 3.6038 0.0000 6 6 3.2662 3.7042 -0.0005 7 6 3.9069 4.9548 -0.0016 8 6 5.2666 5.0153 -0.0026 9 6 5.9498 6.3586 -0.0043 10 6 6.2226 6.8201 -1.4373 11 7 5.1368 7.3544 0.7150 12 6 5.8778 7.7773 1.7551 13 8 5.5021 8.6078 2.5588 14 7 7.0749 7.1820 1.8052 15 6 8.0236 7.4348 2.7681 16 1 8.1103 8.4235 3.1943 17 6 8.8703 6.4189 3.1925 18 7 8.5410 5.1628 2.9924 19 14 10.4771 6.8383 4.0478 20 1 10.1927 7.6087 5.2851 21 1 11.1928 5.5854 4.3989 22 1 11.3228 7.6543 3.1400 23 6 7.2366 6.3048 0.7950 24 8 8.2084 5.6150 0.5727 25 6 6.0367 3.8537 -0.0032 26 6 5.4513 2.6251 -0.0022 27 6 4.0492 2.5227 -0.0001 28 6 3.4103 1.2718 0.0005 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 0.1980 2.3045 0.0005 33 1 1.2563 4.4967 0.0000 34 1 3.3233 5.8636 -0.0024 35 1 5.2800 6.9020 -1.9784 36 1 6.7166 7.7916 -1.4183 37 1 6.8661 6.0953 -1.9361 38 1 4.2415 7.6477 0.4840 39 1 9.1325 4.4533 3.2885 40 1 7.1140 3.9296 -0.0044 41 1 6.0606 1.7334 -0.0031 42 1 3.9946 0.3636 0.0054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000008890983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = -42.688004 kcal Electronic energy + Delta-G solvation = -29483.457808 eV Core-core repulsion = 25394.287190 eV Total energy + Delta-G solvation = -4089.170619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.24275 -41.53975 -39.93337 -39.05323 -37.58133 -36.46177 -35.76651 -33.95602 -33.34210 -31.84367 -30.65297 -29.85013 -27.85239 -27.77068 -25.60301 -24.39450 -23.69169 -23.18552 -22.41041 -21.68660 -19.48909 -19.21707 -18.49750 -18.14593 -17.80461 -17.18814 -16.96278 -16.64057 -16.49539 -16.24258 -16.11045 -15.75995 -15.55112 -15.18511 -15.02163 -14.73092 -14.44117 -14.30255 -14.02404 -13.84376 -13.60891 -13.36324 -13.30136 -13.18983 -12.95750 -12.83685 -12.68841 -12.43655 -12.30071 -12.18709 -11.67261 -11.58616 -11.52291 -11.26403 -10.82181 -10.53929 -10.43866 -9.97093 -9.34573 -8.64166 -8.48810 -6.33097 -0.43090 -0.00142 1.03979 1.13334 1.37168 1.44042 1.50843 1.83575 1.95199 2.33574 2.37784 2.46191 2.75431 3.09271 3.13937 3.34198 3.47990 3.70165 3.88334 3.93331 4.01328 4.24391 4.30578 4.33473 4.37952 4.44000 4.46299 4.61162 4.67891 4.73617 4.80329 4.86976 4.87600 4.96135 5.10546 5.24133 5.26882 5.28303 5.33171 5.52313 5.59200 5.74110 5.87789 5.95755 6.01666 6.33088 6.43381 6.69703 7.15914 7.19737 7.82309 8.60229 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016409 B = 0.003306 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.945909 B = 8466.402524 C = 9120.219964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.336 6.336 3 C 0.127 3.873 4 C -0.192 4.192 5 C -0.057 4.057 6 C -0.099 4.099 7 C -0.069 4.069 8 C -0.100 4.100 9 C 0.170 3.830 10 C -0.130 4.130 11 N -0.708 5.708 12 C 0.673 3.327 13 O -0.605 6.605 14 N -0.429 5.429 15 C -0.389 4.389 16 H 0.091 0.909 17 C 0.016 3.984 18 N -0.853 5.853 19 Si 0.996 3.004 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.265 1.265 23 C 0.494 3.506 24 O -0.487 6.487 25 C -0.100 4.100 26 C -0.123 4.123 27 C -0.021 4.021 28 C -0.175 4.175 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.442 0.558 39 H 0.274 0.726 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.617 -8.038 -11.417 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.082 3.918 4 C -0.210 4.210 5 C -0.074 4.074 6 C -0.099 4.099 7 C -0.087 4.087 8 C -0.101 4.101 9 C 0.079 3.921 10 C -0.188 4.188 11 N -0.374 5.374 12 C 0.376 3.624 13 O -0.486 6.486 14 N -0.161 5.161 15 C -0.514 4.514 16 H 0.109 0.891 17 C -0.193 4.193 18 N -0.486 5.486 19 Si 0.818 3.182 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.190 1.190 23 C 0.282 3.718 24 O -0.359 6.359 25 C -0.118 4.118 26 C -0.141 4.141 27 C -0.021 4.021 28 C -0.194 4.194 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.180 0.820 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.289 0.711 39 H 0.083 0.917 40 H 0.136 0.864 41 H 0.154 0.846 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.081 -8.371 -11.030 21.221 hybrid contribution 0.617 0.223 0.757 1.002 sum -15.464 -8.148 -10.273 20.275 Atomic orbital electron populations 1.23387 0.76268 1.05657 1.02515 1.86075 1.23700 1.26654 1.88590 1.18805 0.92005 0.85120 0.95893 1.21328 1.01669 0.91444 1.06522 1.21213 0.92206 0.98976 0.95049 1.18211 0.94638 0.92439 1.04630 1.20882 0.92739 0.97691 0.97358 1.19143 0.94464 0.92308 1.04197 1.20197 0.88369 0.87977 0.95577 1.21936 1.04835 1.02049 0.89958 1.45375 1.19219 1.44031 1.28735 1.16532 0.81420 0.82221 0.82254 1.90773 1.75182 1.37552 1.45078 1.42075 1.13209 1.36714 1.24122 1.19483 1.12962 0.97741 1.21244 0.89132 1.26264 1.02726 0.93905 0.96376 1.70013 1.36782 0.99866 1.41917 0.84980 0.76749 0.78042 0.78445 1.18657 1.19852 1.19005 1.20745 0.88966 0.81136 0.80966 1.90508 1.34931 1.40515 1.69970 1.21039 1.00993 0.92553 0.97209 1.21023 0.93639 0.97655 1.01788 1.17955 0.93219 0.92846 0.98055 1.20211 0.92626 0.97215 1.09376 0.91155 0.86461 0.91623 0.82016 0.81825 0.82954 0.87307 0.91565 0.90193 0.71108 0.91675 0.86377 0.84559 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.80 113.37 1.11 1.27 16 2 O -0.34 -6.82 10.47 -92.28 -0.97 -7.78 16 3 C 0.13 2.89 6.63 22.27 0.15 3.04 16 4 C -0.19 -3.49 8.93 22.14 0.20 -3.29 16 5 C -0.06 -1.12 9.76 22.32 0.22 -0.90 16 6 C -0.10 -2.67 5.74 -21.28 -0.12 -2.79 16 7 C -0.07 -1.91 9.04 22.33 0.20 -1.71 16 8 C -0.10 -3.44 4.85 -20.09 -0.10 -3.54 16 9 C 0.17 6.20 1.15 2.24 0.00 6.20 16 10 C -0.13 -3.59 8.97 71.98 0.65 -2.94 16 11 N -0.71 -25.31 5.26 -443.27 -2.33 -27.65 16 12 C 0.67 33.19 8.57 179.44 1.54 34.72 16 13 O -0.61 -33.26 17.62 -3.79 -0.07 -33.32 16 14 N -0.43 -23.40 2.69 -598.61 -1.61 -25.02 16 15 C -0.39 -22.87 9.46 83.96 0.79 -22.07 16 16 H 0.09 5.35 7.91 -2.91 -0.02 5.32 16 17 C 0.02 0.89 4.82 84.92 0.41 1.30 16 18 N -0.85 -50.06 11.20 21.65 0.24 -49.81 16 19 Si 1.00 44.42 29.60 68.60 2.03 46.45 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C 0.49 24.54 5.79 87.94 0.51 25.05 16 24 O -0.49 -26.53 13.28 -2.88 -0.04 -26.57 16 25 C -0.10 -3.75 9.08 22.04 0.20 -3.55 16 26 C -0.12 -4.06 9.77 22.34 0.22 -3.84 16 27 C -0.02 -0.61 5.74 -21.30 -0.12 -0.74 16 28 C -0.18 -4.67 9.68 22.42 0.22 -4.46 16 29 H 0.07 0.52 7.63 -2.39 -0.02 0.50 16 30 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.56 7.63 -2.39 -0.02 0.54 16 32 H 0.16 1.77 6.21 -2.91 -0.02 1.75 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.15 3.17 6.86 -2.91 -0.02 3.15 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.44 11.71 8.05 -92.71 -0.75 10.97 16 39 H 0.27 15.21 8.31 -92.70 -0.77 14.44 16 40 H 0.12 5.15 5.71 -2.91 -0.02 5.14 16 41 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 42 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -79.81 354.27 3.67 -76.14 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.34 Total: 25.80 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.07 Total: 21.76 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.70 Total: -102.48 kcal Atomic # 8 Polarization: -66.60 SS G_CDS: -1.07 Total: -67.67 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -79.81 3.67 -76.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008890983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.456 kcal (2) G-P(sol) polarization free energy of solvation -79.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds