Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46832 * 275.35009 * 3 2 1 5 5 H 1.48498 * 109.47017 * 35.34913 * 3 2 1 6 6 H 1.48499 * 109.47011 * 155.35077 * 3 2 1 7 7 C 1.38889 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99484 * 353.07434 * 7 2 1 9 9 N 1.37137 * 120.00001 * 173.07653 * 7 2 1 10 10 C 1.34772 * 120.00010 * 128.22845 * 9 7 2 11 11 O 1.21277 * 120.00441 * 183.74174 * 10 9 7 12 12 C 1.50704 * 120.00002 * 3.74407 * 10 9 7 13 13 O 1.42901 * 109.47251 * 184.98702 * 12 10 9 14 14 C 1.35713 * 116.99960 * 184.58041 * 13 12 10 15 15 C 1.38994 * 119.90890 * 4.71011 * 14 13 12 16 16 C 1.37711 * 120.08335 * 179.72307 * 15 14 13 17 17 C 1.39731 * 119.90969 * 0.57654 * 16 15 14 18 18 C 1.47600 * 120.08871 * 179.68287 * 17 16 15 19 19 N 1.34777 * 119.99513 * 0.02562 * 18 17 16 20 20 O 1.21586 * 120.00209 * 180.02562 * 18 17 16 21 21 C 1.39737 * 119.82507 * 359.69604 * 17 16 15 22 22 C 1.37705 * 119.91052 * 0.02562 * 21 17 16 23 23 C 1.39793 * 120.00053 * 308.22588 * 9 7 2 24 24 C 1.38954 * 120.07571 * 351.69020 * 23 9 7 25 25 C 1.38090 * 119.92276 * 179.97438 * 24 23 9 26 26 C 1.38314 * 120.07153 * 359.97438 * 25 24 23 27 27 C 1.38302 * 120.15691 * 0.05212 * 26 25 24 28 28 C 1.38075 * 120.08057 * 359.94542 * 27 26 25 29 29 H 0.96994 * 120.00329 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47246 * 304.99015 * 12 10 9 31 31 H 1.09002 * 109.47194 * 64.98826 * 12 10 9 32 32 H 1.07998 * 119.96120 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.04371 * 180.27906 * 16 15 14 34 34 H 0.96995 * 120.00239 * 0.02562 * 19 18 17 35 35 H 0.97008 * 119.99452 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.04247 * 179.97438 * 21 17 16 37 37 H 1.08001 * 119.95557 * 179.97438 * 22 21 17 38 38 H 1.07997 * 120.04486 * 359.70345 * 24 23 9 39 39 H 1.07998 * 119.96133 * 180.02562 * 25 24 23 40 40 H 1.07996 * 119.91723 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.95626 * 179.97438 * 27 26 25 42 42 H 1.08006 * 120.04143 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 2.3825 2.1118 -1.3940 5 1 1.5066 2.6174 0.8100 6 1 3.5977 1.4103 0.5839 7 6 2.0088 -1.2028 -0.0005 8 1 1.4747 -2.1347 0.1118 9 7 3.3726 -1.2069 -0.1437 10 6 4.1409 -1.8750 0.7394 11 8 5.3494 -1.8231 0.6528 12 6 3.4981 -2.6868 1.8344 13 8 4.5099 -3.2004 2.7031 14 6 4.1058 -4.0366 3.6927 15 6 2.7757 -4.4335 3.7648 16 6 2.3630 -5.2864 4.7641 17 6 3.2809 -5.7432 5.7135 18 6 2.8414 -6.6518 6.7904 19 7 1.5532 -7.0424 6.8586 20 8 3.6413 -7.0479 7.6159 21 6 4.6160 -5.3372 5.6408 22 6 5.0220 -4.4887 4.6351 23 6 3.9661 -0.5182 -1.2056 24 6 3.1762 0.0248 -2.2116 25 6 3.7657 0.7050 -3.2589 26 6 5.1407 0.8465 -3.3068 27 6 5.9300 0.3069 -2.3075 28 6 5.3472 -0.3745 -1.2574 29 1 -0.4850 0.8400 0.0004 30 1 2.8172 -2.0541 2.4038 31 1 2.9423 -3.5148 1.3944 32 1 2.0660 -4.0765 3.0332 33 1 1.3303 -5.5980 4.8168 34 1 0.9152 -6.7267 6.1998 35 1 1.2644 -7.6399 7.5661 36 1 5.3284 -5.6878 6.3731 37 1 6.0536 -4.1742 4.5785 38 1 2.1027 -0.0887 -2.1769 39 1 3.1523 1.1276 -4.0408 40 1 5.5991 1.3786 -4.1272 41 1 7.0034 0.4189 -2.3484 42 1 5.9642 -0.7953 -0.4771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -26.832431 kcal Electronic energy + Delta-G solvation = -28282.563349 eV Core-core repulsion = 24194.080279 eV Total energy + Delta-G solvation = -4088.483070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61738 -40.13663 -39.24618 -37.71142 -36.77435 -35.30739 -33.99615 -32.40983 -31.22102 -30.53155 -30.19628 -29.65263 -27.49333 -25.41567 -23.78001 -23.00700 -22.06301 -21.47069 -20.62463 -19.61373 -18.65073 -18.37133 -17.68246 -17.03279 -16.33985 -16.22584 -15.84451 -15.72209 -15.29259 -15.13163 -14.85365 -14.39713 -14.22218 -14.04937 -13.88882 -13.52148 -13.39821 -13.09303 -12.92395 -12.71172 -12.67574 -12.43801 -12.13634 -12.10155 -11.49585 -11.12170 -11.00280 -10.86644 -10.78437 -10.41480 -10.24596 -10.22881 -9.92418 -9.65126 -9.19438 -9.11153 -8.57220 -8.29114 -8.13772 -7.25207 -6.75286 -4.69367 0.81605 1.23310 1.90715 2.07235 2.75695 2.89951 3.03569 3.13950 3.22547 3.30156 3.34958 3.76928 3.94498 4.18744 4.44180 4.56293 4.70802 4.71879 4.81603 5.04898 5.19995 5.32331 5.43360 5.51245 5.53357 5.60432 5.66736 5.80902 5.82825 6.03408 6.17261 6.18773 6.22134 6.28504 6.42070 6.52525 6.60598 6.69660 7.04573 7.10275 7.12640 7.18378 7.24053 7.37158 7.56856 7.76196 8.00076 8.07568 8.55846 8.86124 9.12995 10.27152 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002694 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.297804 B =10389.121131 C =11426.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.088 3.912 3 Si 0.867 3.133 4 H -0.250 1.250 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.381 4.381 8 H 0.111 0.889 9 N -0.401 5.401 10 C 0.499 3.501 11 O -0.539 6.539 12 C 0.058 3.942 13 O -0.289 6.289 14 C 0.172 3.828 15 C -0.220 4.220 16 C -0.040 4.040 17 C -0.194 4.194 18 C 0.571 3.429 19 N -0.855 5.855 20 O -0.549 6.549 21 C -0.018 4.018 22 C -0.163 4.163 23 C 0.154 3.846 24 C -0.151 4.151 25 C -0.107 4.107 26 C -0.167 4.167 27 C -0.110 4.110 28 C -0.182 4.182 29 H 0.282 0.718 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.142 0.858 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -6.459 4.906 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.693 3.307 4 H -0.175 1.175 5 H -0.213 1.213 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.128 0.872 9 N -0.112 5.112 10 C 0.290 3.710 11 O -0.420 6.420 12 C -0.020 4.020 13 O -0.200 6.200 14 C 0.124 3.876 15 C -0.238 4.238 16 C -0.059 4.059 17 C -0.198 4.198 18 C 0.358 3.642 19 N -0.418 5.418 20 O -0.428 6.428 21 C -0.037 4.037 22 C -0.182 4.182 23 C 0.058 3.942 24 C -0.171 4.171 25 C -0.126 4.126 26 C -0.186 4.186 27 C -0.129 4.129 28 C -0.202 4.202 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.160 0.840 33 H 0.146 0.854 34 H 0.231 0.769 35 H 0.233 0.767 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.948 -6.457 5.315 8.587 hybrid contribution -0.841 0.886 -0.334 1.267 sum 1.107 -5.571 4.981 7.555 Atomic orbital electron populations 1.69645 1.06139 1.29021 1.43481 1.25433 0.95237 0.99011 0.92667 0.87008 0.80857 0.82603 0.80262 1.17455 1.21264 1.18250 1.19053 0.78485 0.96051 1.57113 0.87165 1.41209 1.07379 1.43159 1.19423 1.20139 0.86390 0.82154 0.82349 1.90273 1.14502 1.64418 1.72825 1.22457 0.89585 0.98550 0.91374 1.86092 1.36133 1.58343 1.39467 1.19415 0.92646 0.88119 0.87400 1.21369 0.95688 1.03973 1.02815 1.21027 0.98574 0.94008 0.92309 1.19680 0.95449 1.05285 0.99367 1.18203 0.82040 0.79728 0.84215 1.43765 1.10529 1.52897 1.34643 1.90802 1.53094 1.57146 1.41745 1.21015 0.94532 0.92540 0.95629 1.20449 1.00309 1.02205 0.95232 1.18412 0.92087 0.95067 0.88609 1.21080 1.01318 1.00672 0.94058 1.20837 0.94679 0.99232 0.97824 1.20952 0.93956 1.03750 0.99946 1.21024 0.99067 0.98129 0.94640 1.22773 0.94430 1.01453 1.01509 0.90769 0.87686 0.88877 0.83982 0.85439 0.76944 0.76665 0.84139 0.84255 0.84203 0.86746 0.87239 0.86810 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.15 13.96 55.49 0.77 -20.37 16 2 C 0.09 2.11 4.30 -17.49 -0.08 2.04 16 3 Si 0.87 19.75 24.16 -169.99 -4.11 15.64 16 4 H -0.25 -5.53 6.05 56.52 0.34 -5.19 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -6.26 6.90 56.52 0.39 -5.87 16 7 C -0.38 -8.88 7.96 -14.94 -0.12 -9.00 16 8 H 0.11 2.59 7.90 -52.48 -0.41 2.17 16 9 N -0.40 -9.08 2.26 -58.98 -0.13 -9.21 16 10 C 0.50 10.70 7.65 -10.99 -0.08 10.62 16 11 O -0.54 -12.38 12.92 -14.30 -0.18 -12.57 16 12 C 0.06 1.00 4.09 36.01 0.15 1.15 16 13 O -0.29 -4.97 9.66 -38.71 -0.37 -5.34 16 14 C 0.17 2.47 6.69 -39.02 -0.26 2.21 16 15 C -0.22 -2.70 9.05 -39.49 -0.36 -3.06 16 16 C -0.04 -0.42 9.53 -39.22 -0.37 -0.79 16 17 C -0.19 -2.27 5.87 -104.96 -0.62 -2.89 16 18 C 0.57 6.67 8.04 -12.44 -0.10 6.57 16 19 N -0.85 -6.29 8.82 30.47 0.27 -6.02 16 20 O -0.55 -8.41 17.18 5.29 0.09 -8.32 16 21 C -0.02 -0.22 9.58 -39.22 -0.38 -0.60 16 22 C -0.16 -2.12 9.97 -39.50 -0.39 -2.51 16 23 C 0.15 3.47 4.40 -83.70 -0.37 3.10 16 24 C -0.15 -3.23 5.77 -39.37 -0.23 -3.46 16 25 C -0.11 -1.99 9.77 -39.61 -0.39 -2.38 16 26 C -0.17 -2.89 10.04 -39.53 -0.40 -3.29 16 27 C -0.11 -2.01 10.04 -39.62 -0.40 -2.41 16 28 C -0.18 -3.89 9.03 -39.37 -0.36 -4.24 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.11 1.76 7.83 -51.93 -0.41 1.35 16 31 H 0.09 1.43 7.13 -51.93 -0.37 1.06 16 32 H 0.14 1.63 6.25 -52.49 -0.33 1.31 16 33 H 0.13 0.88 6.39 -52.49 -0.34 0.54 16 34 H 0.40 1.93 6.85 -40.82 -0.28 1.66 16 35 H 0.40 2.38 8.93 -40.82 -0.36 2.01 16 36 H 0.14 1.60 7.64 -52.48 -0.40 1.20 16 37 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.14 3.15 5.70 -52.49 -0.30 2.85 16 39 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.18 3.95 4.58 -56.01 -0.26 3.70 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -30.31 350.55 -7.48 -37.78 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -4.35 Total: 12.06 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -4.74 Total: -8.94 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.91 Total: -35.60 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.47 Total: -26.23 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.11 Total: 15.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.31 -7.48 -37.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.952 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds