Wall clock time and date at job start Sat Apr 11 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48501 * 109.46832 * 275.35009 * 3 2 1 5 5 H 1.48498 * 109.47017 * 35.34913 * 3 2 1 6 6 H 1.48499 * 109.47011 * 155.35077 * 3 2 1 7 7 C 1.38889 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99484 * 353.07434 * 7 2 1 9 9 N 1.37137 * 120.00001 * 173.07653 * 7 2 1 10 10 C 1.34772 * 120.00010 * 128.22845 * 9 7 2 11 11 O 1.21277 * 120.00441 * 183.74174 * 10 9 7 12 12 C 1.50704 * 120.00002 * 3.74407 * 10 9 7 13 13 O 1.42901 * 109.47251 * 184.98702 * 12 10 9 14 14 C 1.35713 * 116.99960 * 184.58041 * 13 12 10 15 15 C 1.38994 * 119.90890 * 4.71011 * 14 13 12 16 16 C 1.37711 * 120.08335 * 179.72307 * 15 14 13 17 17 C 1.39731 * 119.90969 * 0.57654 * 16 15 14 18 18 C 1.47600 * 120.08871 * 179.68287 * 17 16 15 19 19 N 1.34777 * 119.99513 * 0.02562 * 18 17 16 20 20 O 1.21586 * 120.00209 * 180.02562 * 18 17 16 21 21 C 1.39737 * 119.82507 * 359.69604 * 17 16 15 22 22 C 1.37705 * 119.91052 * 0.02562 * 21 17 16 23 23 C 1.39793 * 120.00053 * 308.22588 * 9 7 2 24 24 C 1.38954 * 120.07571 * 351.69020 * 23 9 7 25 25 C 1.38090 * 119.92276 * 179.97438 * 24 23 9 26 26 C 1.38314 * 120.07153 * 359.97438 * 25 24 23 27 27 C 1.38302 * 120.15691 * 0.05212 * 26 25 24 28 28 C 1.38075 * 120.08057 * 359.94542 * 27 26 25 29 29 H 0.96994 * 120.00329 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47246 * 304.99015 * 12 10 9 31 31 H 1.09002 * 109.47194 * 64.98826 * 12 10 9 32 32 H 1.07998 * 119.96120 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.04371 * 180.27906 * 16 15 14 34 34 H 0.96995 * 120.00239 * 0.02562 * 19 18 17 35 35 H 0.97008 * 119.99452 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.04247 * 179.97438 * 21 17 16 37 37 H 1.08001 * 119.95557 * 179.97438 * 22 21 17 38 38 H 1.07997 * 120.04486 * 359.70345 * 24 23 9 39 39 H 1.07998 * 119.96133 * 180.02562 * 25 24 23 40 40 H 1.07996 * 119.91723 * 179.97438 * 26 25 24 41 41 H 1.08002 * 119.95626 * 179.97438 * 27 26 25 42 42 H 1.08006 * 120.04143 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6179 0.0000 4 1 2.3825 2.1118 -1.3940 5 1 1.5066 2.6174 0.8100 6 1 3.5977 1.4103 0.5839 7 6 2.0088 -1.2028 -0.0005 8 1 1.4747 -2.1347 0.1118 9 7 3.3726 -1.2069 -0.1437 10 6 4.1409 -1.8750 0.7394 11 8 5.3494 -1.8231 0.6528 12 6 3.4981 -2.6868 1.8344 13 8 4.5099 -3.2004 2.7031 14 6 4.1058 -4.0366 3.6927 15 6 2.7757 -4.4335 3.7648 16 6 2.3630 -5.2864 4.7641 17 6 3.2809 -5.7432 5.7135 18 6 2.8414 -6.6518 6.7904 19 7 1.5532 -7.0424 6.8586 20 8 3.6413 -7.0479 7.6159 21 6 4.6160 -5.3372 5.6408 22 6 5.0220 -4.4887 4.6351 23 6 3.9661 -0.5182 -1.2056 24 6 3.1762 0.0248 -2.2116 25 6 3.7657 0.7050 -3.2589 26 6 5.1407 0.8465 -3.3068 27 6 5.9300 0.3069 -2.3075 28 6 5.3472 -0.3745 -1.2574 29 1 -0.4850 0.8400 0.0004 30 1 2.8172 -2.0541 2.4038 31 1 2.9423 -3.5148 1.3944 32 1 2.0660 -4.0765 3.0332 33 1 1.3303 -5.5980 4.8168 34 1 0.9152 -6.7267 6.1998 35 1 1.2644 -7.6399 7.5661 36 1 5.3284 -5.6878 6.3731 37 1 6.0536 -4.1742 4.5785 38 1 2.1027 -0.0887 -2.1769 39 1 3.1523 1.1276 -4.0408 40 1 5.5991 1.3786 -4.1272 41 1 7.0034 0.4189 -2.3484 42 1 5.9642 -0.7953 -0.4771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023104867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:04 Heat of formation + Delta-G solvation = -46.312085 kcal Electronic energy + Delta-G solvation = -28283.408050 eV Core-core repulsion = 24194.080279 eV Total energy + Delta-G solvation = -4089.327771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.02767 -41.34609 -40.34784 -39.16521 -37.93244 -37.00397 -34.83491 -34.22622 -32.23349 -31.78611 -31.65715 -30.92351 -28.89261 -27.16645 -24.79516 -24.13324 -23.48741 -22.93010 -21.61867 -21.23927 -19.99068 -19.63887 -18.74609 -18.05364 -17.83421 -17.70372 -17.24040 -17.19944 -16.64247 -16.07486 -15.95257 -15.80500 -15.68150 -15.38184 -15.12529 -14.91389 -14.68757 -14.49402 -14.34149 -14.19086 -14.08614 -13.77842 -13.43775 -13.37931 -13.18228 -12.68834 -12.51813 -12.14589 -12.12390 -11.93287 -11.87111 -11.37319 -11.21114 -10.86984 -10.70549 -10.20650 -10.13517 -9.68212 -9.34844 -8.91758 -8.58451 -6.53234 -0.16513 0.28955 0.36921 0.52777 1.21909 1.29830 1.38523 1.57768 1.67339 1.81113 2.11820 2.57200 2.68856 2.75551 2.82156 3.07234 3.56827 3.74665 3.83728 3.94355 4.03744 4.15756 4.17796 4.18460 4.26084 4.39765 4.44825 4.54165 4.65412 4.75813 4.82973 4.92961 5.06132 5.20069 5.21054 5.28951 5.43970 5.53611 5.60033 5.63961 5.70839 5.89839 5.92316 5.97986 6.22536 6.35686 6.42772 6.77211 7.12043 7.30420 7.42109 8.44519 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.002694 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.297804 B =10389.121131 C =11426.142695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.069 3.931 3 Si 0.903 3.097 4 H -0.239 1.239 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.371 4.371 8 H 0.105 0.895 9 N -0.412 5.412 10 C 0.488 3.512 11 O -0.561 6.561 12 C 0.069 3.931 13 O -0.312 6.312 14 C 0.145 3.855 15 C -0.222 4.222 16 C -0.028 4.028 17 C -0.196 4.196 18 C 0.569 3.431 19 N -0.830 5.830 20 O -0.591 6.591 21 C -0.024 4.024 22 C -0.169 4.169 23 C 0.124 3.876 24 C -0.170 4.170 25 C -0.108 4.108 26 C -0.154 4.154 27 C -0.107 4.107 28 C -0.205 4.205 29 H 0.286 0.714 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.416 0.584 35 H 0.413 0.587 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.144 0.856 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.208 -6.362 4.063 7.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.163 1.163 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.497 4.497 8 H 0.122 0.878 9 N -0.124 5.124 10 C 0.280 3.720 11 O -0.444 6.444 12 C -0.008 4.008 13 O -0.224 6.224 14 C 0.099 3.901 15 C -0.240 4.240 16 C -0.046 4.046 17 C -0.199 4.199 18 C 0.356 3.644 19 N -0.395 5.395 20 O -0.473 6.473 21 C -0.043 4.043 22 C -0.187 4.187 23 C 0.029 3.971 24 C -0.191 4.191 25 C -0.126 4.126 26 C -0.173 4.173 27 C -0.125 4.125 28 C -0.225 4.225 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.168 0.832 33 H 0.186 0.814 34 H 0.249 0.751 35 H 0.246 0.754 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.333 -6.364 4.453 7.881 hybrid contribution -0.600 0.787 -0.087 0.993 sum 0.734 -5.577 4.367 7.121 Atomic orbital electron populations 1.69667 1.06670 1.29573 1.45204 1.25678 0.95398 1.00162 0.92759 0.86487 0.78712 0.81423 0.80455 1.16271 1.21252 1.21013 1.19001 0.78926 0.95713 1.56053 0.87772 1.41327 1.07143 1.43763 1.20164 1.20797 0.86341 0.81996 0.82870 1.90260 1.15409 1.65162 1.73563 1.22297 0.89241 0.98729 0.90528 1.86043 1.36438 1.59526 1.40403 1.19674 0.94062 0.88900 0.87498 1.21532 0.94865 1.04132 1.03503 1.21372 1.00191 0.92416 0.90623 1.19861 0.95456 1.05009 0.99613 1.18217 0.82940 0.79557 0.83649 1.43572 1.09241 1.51798 1.34869 1.90789 1.54530 1.58787 1.43232 1.21119 0.95305 0.92407 0.95424 1.20528 1.00470 1.02438 0.95282 1.18708 0.92891 0.96161 0.89306 1.21093 1.00521 1.02251 0.95232 1.21267 0.95906 0.98041 0.97390 1.21422 0.93304 1.02292 1.00290 1.21423 1.00934 0.96601 0.93581 1.22783 0.94032 1.02956 1.02679 0.90402 0.87327 0.86975 0.83176 0.81407 0.75131 0.75449 0.83784 0.84057 0.85870 0.83781 0.82874 0.83652 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.71 13.96 21.65 0.30 -43.40 16 2 C 0.07 3.33 4.30 84.91 0.36 3.69 16 3 Si 0.90 40.89 24.16 68.60 1.66 42.55 16 4 H -0.24 -10.23 6.05 99.48 0.60 -9.63 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -14.04 6.90 99.48 0.69 -13.36 16 7 C -0.37 -17.54 7.96 84.02 0.67 -16.87 16 8 H 0.10 4.96 7.90 -2.91 -0.02 4.94 16 9 N -0.41 -19.09 2.26 -458.90 -1.04 -20.13 16 10 C 0.49 21.57 7.65 87.66 0.67 22.24 16 11 O -0.56 -26.77 12.92 15.97 0.21 -26.57 16 12 C 0.07 2.45 4.09 71.24 0.29 2.74 16 13 O -0.31 -10.99 9.66 -71.36 -0.69 -11.68 16 14 C 0.15 4.18 6.69 22.63 0.15 4.33 16 15 C -0.22 -5.18 9.05 22.33 0.20 -4.98 16 16 C -0.03 -0.51 9.53 22.51 0.21 -0.29 16 17 C -0.20 -4.28 5.87 -20.08 -0.12 -4.40 16 18 C 0.57 12.35 8.04 86.71 0.70 13.04 16 19 N -0.83 -9.89 8.82 -175.77 -1.55 -11.44 16 20 O -0.59 -17.72 17.18 -3.99 -0.07 -17.79 16 21 C -0.02 -0.57 9.58 22.51 0.22 -0.36 16 22 C -0.17 -4.43 9.97 22.32 0.22 -4.21 16 23 C 0.12 5.65 4.40 38.22 0.17 5.82 16 24 C -0.17 -7.21 5.77 22.41 0.13 -7.08 16 25 C -0.11 -3.72 9.77 22.25 0.22 -3.50 16 26 C -0.15 -4.77 10.04 22.30 0.22 -4.55 16 27 C -0.11 -3.67 10.04 22.25 0.22 -3.45 16 28 C -0.20 -8.74 9.03 22.40 0.20 -8.54 16 29 H 0.29 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.11 3.71 7.83 -2.39 -0.02 3.69 16 31 H 0.11 3.45 7.13 -2.39 -0.02 3.44 16 32 H 0.15 3.23 6.25 -2.91 -0.02 3.21 16 33 H 0.17 1.61 6.39 -2.91 -0.02 1.59 16 34 H 0.42 2.46 6.85 -92.71 -0.64 1.82 16 35 H 0.41 3.77 8.93 -92.70 -0.83 2.95 16 36 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.12 5.57 5.70 -2.91 -0.02 5.55 16 39 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.15 3.98 8.06 -2.91 -0.02 3.95 16 42 H 0.16 7.44 4.58 -58.71 -0.27 7.17 16 Total: -1.00 -67.45 350.55 2.83 -64.62 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: -0.73 Total: 30.18 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 4.75 Total: -6.34 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -2.29 Total: -74.97 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.55 Total: -56.03 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.66 Total: 42.55 kcal Total: -67.45 2.83 -64.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.305 kcal (2) G-P(sol) polarization free energy of solvation -67.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds