Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38367 * 119.45536 * 2 1 4 4 C 1.38340 * 119.31201 * 179.97438 * 3 2 1 5 5 C 1.40078 * 118.28094 * 359.97438 * 4 3 2 6 6 C 1.47718 * 120.56450 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99924 * 0.02562 * 6 5 4 8 8 O 1.34711 * 120.00308 * 180.02562 * 6 5 4 9 9 C 1.45203 * 116.99852 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46828 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99933 * 354.94064 * 10 9 8 12 12 N 1.34770 * 119.99836 * 174.93884 * 10 9 8 13 13 C 1.37148 * 120.00107 * 5.67577 * 12 10 9 14 14 H 1.07991 * 119.99849 * 55.66953 * 13 12 10 15 15 C 1.38888 * 119.99780 * 235.66680 * 13 12 10 16 16 N 1.31424 * 120.00225 * 9.25097 * 15 13 12 17 17 Si 1.86802 * 119.99865 * 189.24132 * 15 13 12 18 18 H 1.48493 * 109.46978 * 90.00546 * 17 15 13 19 19 H 1.48497 * 109.47326 * 210.00347 * 17 15 13 20 20 H 1.48495 * 109.47054 * 330.00534 * 17 15 13 21 21 C 1.39787 * 119.99883 * 185.67752 * 12 10 9 22 22 C 1.38962 * 120.07816 * 175.18488 * 21 12 10 23 23 C 1.38081 * 119.92443 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07426 * 0.02562 * 23 22 21 25 25 C 1.38302 * 120.15721 * 359.97438 * 24 23 22 26 26 C 1.38085 * 120.08194 * 0.02562 * 25 24 23 27 27 C 1.39574 * 118.87346 * 0.25838 * 5 4 3 28 28 N 1.31687 * 120.55958 * 359.46927 * 27 5 4 29 29 H 1.09000 * 109.47024 * 90.00429 * 1 2 3 30 30 H 1.09001 * 109.46874 * 209.99366 * 1 2 3 31 31 H 1.08996 * 109.47515 * 329.99756 * 1 2 3 32 32 H 1.08003 * 120.34348 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.85849 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47328 * 60.00196 * 9 8 6 35 35 H 1.08999 * 109.47063 * 300.00051 * 9 8 6 36 36 H 0.97001 * 119.99727 * 184.98175 * 16 15 13 37 37 H 1.08007 * 120.03865 * 359.70570 * 22 21 12 38 38 H 1.08001 * 119.96327 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.92028 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.96312 * 180.02562 * 25 24 23 41 41 H 1.07991 * 120.04591 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.72108 * 179.72743 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2014 0.0005 5 6 4.2313 -0.0339 0.0016 6 6 5.7072 -0.0964 0.0017 7 8 6.3586 0.9289 0.0012 8 8 6.3308 -1.2905 0.0022 9 6 7.7828 -1.2759 0.0028 10 6 8.2994 -2.6916 0.0039 11 8 7.5244 -3.6198 0.0969 12 7 9.6225 -2.9262 -0.0983 13 6 10.5077 -1.8786 -0.0862 14 1 10.5050 -1.1790 0.7365 15 6 11.4074 -1.7176 -1.1319 16 7 11.2944 -2.4531 -2.2151 17 14 12.7780 -0.4554 -0.9987 18 1 13.9770 -1.0887 -0.3934 19 1 13.1166 0.0524 -2.3524 20 1 12.3299 0.6735 -0.1444 21 6 10.0929 -4.2372 -0.2168 22 6 11.4463 -4.4757 -0.4227 23 6 11.9075 -5.7720 -0.5387 24 6 11.0239 -6.8325 -0.4508 25 6 9.6763 -6.5989 -0.2460 26 6 9.2080 -5.3051 -0.1290 27 6 3.4714 -1.2046 -0.0034 28 7 2.1557 -1.1488 0.0014 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5138 32 1 1.6441 2.1382 0.0004 33 1 4.1270 2.1271 0.0001 34 1 8.1406 -0.7582 0.8928 35 1 8.1413 -0.7586 -0.8872 36 1 11.9639 -2.3925 -2.9145 37 1 12.1361 -3.6478 -0.4962 38 1 12.9592 -5.9581 -0.6992 39 1 11.3873 -7.8454 -0.5424 40 1 8.9892 -7.4293 -0.1774 41 1 8.1556 -5.1233 0.0306 42 1 3.9666 -2.1644 -0.0071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023519169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -30.788782 kcal Electronic energy + Delta-G solvation = -28266.482024 eV Core-core repulsion = 24177.827394 eV Total energy + Delta-G solvation = -4088.654630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.85566 -39.98745 -39.40315 -37.32068 -36.10066 -35.11833 -33.40344 -32.61575 -32.08274 -29.93057 -29.63120 -28.64391 -27.12734 -25.27636 -24.01636 -23.36955 -21.87733 -21.28115 -20.82666 -19.65203 -18.17621 -18.00999 -17.06888 -16.37751 -16.22335 -16.03840 -15.79718 -15.59004 -15.22446 -14.80081 -14.66076 -14.29636 -14.18699 -13.58532 -13.42674 -13.10873 -12.97304 -12.94093 -12.60113 -12.51661 -12.43070 -12.29283 -12.22955 -11.80868 -11.57125 -11.32350 -11.18154 -10.89710 -10.66251 -10.52784 -10.38539 -10.18032 -10.09531 -9.69849 -9.34251 -9.26346 -8.83856 -8.25940 -7.84880 -6.98470 -6.41995 -4.68306 0.34542 0.98329 2.32990 2.51149 2.51684 2.57137 2.99410 3.08686 3.10856 3.56730 3.59224 3.87332 3.97591 4.31759 4.40913 4.63518 4.64457 4.65581 4.95341 5.01084 5.05374 5.23204 5.26606 5.43196 5.50427 5.64666 5.68700 5.77293 5.83415 5.86658 5.91158 5.99281 6.12125 6.34134 6.55761 6.64504 6.67598 6.82544 7.07287 7.15061 7.44745 7.55057 7.60734 7.64485 7.68116 7.83245 7.96840 8.34042 8.72493 9.07617 9.45057 10.36493 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002917 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.048604 B = 9595.933219 C =11381.727739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.154 3.846 3 C -0.187 4.187 4 C -0.009 4.009 5 C -0.179 4.179 6 C 0.512 3.488 7 O -0.505 6.505 8 O -0.331 6.331 9 C 0.074 3.926 10 C 0.496 3.504 11 O -0.547 6.547 12 N -0.376 5.376 13 C -0.381 4.381 14 H 0.097 0.903 15 C 0.059 3.941 16 N -0.837 5.837 17 Si 0.916 3.084 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.263 1.263 21 C 0.183 3.817 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.171 4.171 25 C -0.120 4.120 26 C -0.190 4.190 27 C 0.169 3.831 28 N -0.492 5.492 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.277 0.723 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.176 0.824 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 5.428 3.013 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.017 3.983 3 C -0.207 4.207 4 C -0.035 4.035 5 C -0.183 4.183 6 C 0.355 3.645 7 O -0.394 6.394 8 O -0.246 6.246 9 C -0.002 4.002 10 C 0.286 3.714 11 O -0.430 6.430 12 N -0.085 5.085 13 C -0.508 4.508 14 H 0.114 0.886 15 C -0.152 4.152 16 N -0.468 5.468 17 Si 0.741 3.259 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.187 1.187 21 C 0.087 3.913 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.190 4.190 25 C -0.139 4.139 26 C -0.210 4.210 27 C 0.011 3.989 28 N -0.202 5.202 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.192 0.808 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -13.072 4.591 2.827 14.141 hybrid contribution 1.804 1.496 -0.284 2.360 sum -11.269 6.087 2.543 13.058 Atomic orbital electron populations 1.20807 0.88390 1.03872 1.03506 1.21671 0.97494 0.88461 0.90695 1.21917 0.94171 0.99664 1.04960 1.21737 0.94223 0.97591 0.89936 1.20185 0.90987 0.96069 1.11016 1.20829 0.88383 0.81993 0.73254 1.90842 1.67222 1.35476 1.45860 1.86493 1.23357 1.31541 1.83195 1.22637 0.74745 0.97428 1.05391 1.20194 0.82874 0.89180 0.79119 1.90222 1.56903 1.43593 1.52267 1.40769 1.03605 1.04340 1.59812 1.19425 1.17502 1.06953 1.06953 0.88592 1.25640 0.99124 0.96948 0.93494 1.70031 1.33245 1.37924 1.05591 0.86086 0.80776 0.80794 0.78275 1.19592 1.20411 1.18710 1.18231 0.92772 0.84080 0.96225 1.21027 0.94952 0.96430 0.99981 1.20777 0.98410 0.92747 1.02309 1.20817 0.94082 0.97688 1.06397 1.20877 0.94947 0.96411 1.01640 1.22790 1.03564 0.91127 1.03490 1.23409 0.88745 0.98589 0.88109 1.67697 1.09634 1.28860 1.13967 0.89853 0.90013 0.90374 0.83873 0.83270 0.88533 0.87512 0.91252 0.85019 0.87673 0.88073 0.87574 0.80807 0.80447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.00 0.37 -0.33 16 2 C 0.15 1.54 6.78 -82.50 -0.56 0.98 16 3 C -0.19 -1.68 9.72 -39.50 -0.38 -2.06 16 4 C -0.01 -0.10 9.72 -38.85 -0.38 -0.48 16 5 C -0.18 -2.46 5.89 -104.84 -0.62 -3.08 16 6 C 0.51 8.54 7.91 34.60 0.27 8.82 16 7 O -0.50 -9.26 16.21 -19.25 -0.31 -9.57 16 8 O -0.33 -6.15 9.04 -47.19 -0.43 -6.58 16 9 C 0.07 1.48 4.78 36.01 0.17 1.66 16 10 C 0.50 11.56 7.65 -10.98 -0.08 11.48 16 11 O -0.55 -13.32 12.90 -14.04 -0.18 -13.50 16 12 N -0.38 -9.23 2.62 -58.98 -0.15 -9.38 16 13 C -0.38 -9.10 7.61 -14.93 -0.11 -9.21 16 14 H 0.10 2.17 7.85 -52.49 -0.41 1.75 16 15 C 0.06 1.39 3.49 -17.49 -0.06 1.33 16 16 N -0.84 -21.13 11.39 55.49 0.63 -20.50 16 17 Si 0.92 18.25 29.57 -169.99 -5.03 13.23 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 C 0.18 4.52 6.05 -83.69 -0.51 4.01 16 22 C -0.10 -2.43 7.87 -39.37 -0.31 -2.74 16 23 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 24 C -0.17 -3.33 10.04 -39.53 -0.40 -3.72 16 25 C -0.12 -2.45 10.04 -39.61 -0.40 -2.85 16 26 C -0.19 -4.44 9.06 -39.37 -0.36 -4.80 16 27 C 0.17 2.27 10.79 -17.12 -0.18 2.08 16 28 N -0.49 -6.23 10.25 -9.12 -0.09 -6.32 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 33 H 0.15 1.49 7.74 -52.49 -0.41 1.09 16 34 H 0.10 1.80 8.13 -51.93 -0.42 1.37 16 35 H 0.11 2.19 8.04 -51.93 -0.42 1.77 16 36 H 0.28 6.61 8.32 -40.82 -0.34 6.27 16 37 H 0.13 3.19 5.15 -52.48 -0.27 2.92 16 38 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 41 H 0.18 4.21 4.50 -56.38 -0.25 3.95 16 42 H 0.18 2.37 7.62 -52.48 -0.40 1.97 16 LS Contribution 364.84 15.07 5.50 5.50 Total: -1.00 -29.54 364.84 -8.67 -38.21 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.67 Total: 10.79 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.94 Total: -1.87 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.38 Total: -36.20 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.92 Total: -29.65 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.54 -8.67 -38.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023519169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.420 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds