Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38367 * 119.45536 * 2 1 4 4 C 1.38340 * 119.31201 * 179.97438 * 3 2 1 5 5 C 1.40078 * 118.28094 * 359.97438 * 4 3 2 6 6 C 1.47718 * 120.56450 * 179.97438 * 5 4 3 7 7 O 1.21473 * 119.99924 * 0.02562 * 6 5 4 8 8 O 1.34711 * 120.00308 * 180.02562 * 6 5 4 9 9 C 1.45203 * 116.99852 * 180.02562 * 8 6 5 10 10 C 1.50707 * 109.46828 * 179.97438 * 9 8 6 11 11 O 1.21273 * 119.99933 * 354.94064 * 10 9 8 12 12 N 1.34770 * 119.99836 * 174.93884 * 10 9 8 13 13 C 1.37148 * 120.00107 * 5.67577 * 12 10 9 14 14 H 1.07991 * 119.99849 * 55.66953 * 13 12 10 15 15 C 1.38888 * 119.99780 * 235.66680 * 13 12 10 16 16 N 1.31424 * 120.00225 * 9.25097 * 15 13 12 17 17 Si 1.86802 * 119.99865 * 189.24132 * 15 13 12 18 18 H 1.48493 * 109.46978 * 90.00546 * 17 15 13 19 19 H 1.48497 * 109.47326 * 210.00347 * 17 15 13 20 20 H 1.48495 * 109.47054 * 330.00534 * 17 15 13 21 21 C 1.39787 * 119.99883 * 185.67752 * 12 10 9 22 22 C 1.38962 * 120.07816 * 175.18488 * 21 12 10 23 23 C 1.38081 * 119.92443 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07426 * 0.02562 * 23 22 21 25 25 C 1.38302 * 120.15721 * 359.97438 * 24 23 22 26 26 C 1.38085 * 120.08194 * 0.02562 * 25 24 23 27 27 C 1.39574 * 118.87346 * 0.25838 * 5 4 3 28 28 N 1.31687 * 120.55958 * 359.46927 * 27 5 4 29 29 H 1.09000 * 109.47024 * 90.00429 * 1 2 3 30 30 H 1.09001 * 109.46874 * 209.99366 * 1 2 3 31 31 H 1.08996 * 109.47515 * 329.99756 * 1 2 3 32 32 H 1.08003 * 120.34348 * 0.02562 * 3 2 1 33 33 H 1.07999 * 120.85849 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47328 * 60.00196 * 9 8 6 35 35 H 1.08999 * 109.47063 * 300.00051 * 9 8 6 36 36 H 0.97001 * 119.99727 * 184.98175 * 16 15 13 37 37 H 1.08007 * 120.03865 * 359.70570 * 22 21 12 38 38 H 1.08001 * 119.96327 * 179.97438 * 23 22 21 39 39 H 1.07997 * 119.92028 * 179.97438 * 24 23 22 40 40 H 1.08006 * 119.96312 * 180.02562 * 25 24 23 41 41 H 1.07991 * 120.04591 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.72108 * 179.72743 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2048 0.0000 4 6 3.5708 1.2014 0.0005 5 6 4.2313 -0.0339 0.0016 6 6 5.7072 -0.0964 0.0017 7 8 6.3586 0.9289 0.0012 8 8 6.3308 -1.2905 0.0022 9 6 7.7828 -1.2759 0.0028 10 6 8.2994 -2.6916 0.0039 11 8 7.5244 -3.6198 0.0969 12 7 9.6225 -2.9262 -0.0983 13 6 10.5077 -1.8786 -0.0862 14 1 10.5050 -1.1790 0.7365 15 6 11.4074 -1.7176 -1.1319 16 7 11.2944 -2.4531 -2.2151 17 14 12.7780 -0.4554 -0.9987 18 1 13.9770 -1.0887 -0.3934 19 1 13.1166 0.0524 -2.3524 20 1 12.3299 0.6735 -0.1444 21 6 10.0929 -4.2372 -0.2168 22 6 11.4463 -4.4757 -0.4227 23 6 11.9075 -5.7720 -0.5387 24 6 11.0239 -6.8325 -0.4508 25 6 9.6763 -6.5989 -0.2460 26 6 9.2080 -5.3051 -0.1290 27 6 3.4714 -1.2046 -0.0034 28 7 2.1557 -1.1488 0.0014 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5137 31 1 -0.3634 0.8899 0.5138 32 1 1.6441 2.1382 0.0004 33 1 4.1270 2.1271 0.0001 34 1 8.1406 -0.7582 0.8928 35 1 8.1413 -0.7586 -0.8872 36 1 11.9639 -2.3925 -2.9145 37 1 12.1361 -3.6478 -0.4962 38 1 12.9592 -5.9581 -0.6992 39 1 11.3873 -7.8454 -0.5424 40 1 8.9892 -7.4293 -0.1774 41 1 8.1556 -5.1233 0.0306 42 1 3.9666 -2.1644 -0.0071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023519169.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -45.298659 kcal Electronic energy + Delta-G solvation = -28267.111219 eV Core-core repulsion = 24177.827394 eV Total energy + Delta-G solvation = -4089.283825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07542 -41.52636 -40.72082 -39.00265 -37.57886 -36.90972 -34.28526 -33.91552 -33.47680 -31.55925 -31.30521 -29.73966 -28.50841 -27.09730 -25.00116 -24.38269 -23.47168 -22.91805 -22.05028 -21.43291 -19.77678 -19.41386 -18.26294 -17.90400 -17.81859 -17.35645 -17.20718 -16.84780 -16.75182 -16.24996 -16.05369 -15.52350 -15.43566 -14.98801 -14.78827 -14.57884 -14.37454 -14.27427 -14.06920 -13.84129 -13.56763 -13.31282 -13.25371 -13.20624 -13.05348 -13.01404 -12.85170 -12.50801 -12.13036 -11.98750 -11.94230 -11.75257 -11.11456 -11.08328 -10.62592 -10.61296 -10.13483 -10.05394 -9.55221 -8.78151 -8.21125 -6.55192 -0.63724 0.11545 0.61330 0.79730 1.16044 1.30806 1.40445 1.44371 1.55013 1.83761 2.21380 2.63803 2.69073 2.85197 3.15617 3.31528 3.55994 3.65842 3.72732 3.77744 3.90982 4.08885 4.18739 4.23936 4.31761 4.36457 4.58760 4.64479 4.68702 4.81009 4.89351 4.91881 4.97834 5.04509 5.10145 5.15787 5.18001 5.30309 5.39982 5.54724 5.76810 5.84852 5.86399 5.97779 6.17976 6.43151 6.57563 6.78115 6.89767 7.26645 7.63760 8.57109 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.002917 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.048604 B = 9595.933219 C =11381.727739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.151 3.849 3 C -0.170 4.170 4 C -0.010 4.010 5 C -0.200 4.200 6 C 0.513 3.487 7 O -0.526 6.526 8 O -0.341 6.341 9 C 0.086 3.914 10 C 0.482 3.518 11 O -0.566 6.566 12 N -0.387 5.387 13 C -0.394 4.394 14 H 0.103 0.897 15 C 0.026 3.974 16 N -0.871 5.871 17 Si 0.980 3.020 18 H -0.264 1.264 19 H -0.281 1.281 20 H -0.256 1.256 21 C 0.150 3.850 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.161 4.161 25 C -0.119 4.119 26 C -0.214 4.214 27 C 0.161 3.839 28 N -0.514 5.514 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.188 0.812 33 H 0.161 0.839 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.278 0.722 37 H 0.118 0.882 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.161 0.839 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.262 6.091 3.210 14.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.015 3.985 3 C -0.189 4.189 4 C -0.036 4.036 5 C -0.204 4.204 6 C 0.359 3.641 7 O -0.416 6.416 8 O -0.256 6.256 9 C 0.010 3.990 10 C 0.274 3.726 11 O -0.451 6.451 12 N -0.096 5.096 13 C -0.520 4.520 14 H 0.120 0.880 15 C -0.181 4.181 16 N -0.503 5.503 17 Si 0.802 3.198 18 H -0.189 1.189 19 H -0.206 1.206 20 H -0.179 1.179 21 C 0.054 3.946 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.179 4.179 25 C -0.137 4.137 26 C -0.234 4.234 27 C 0.003 3.997 28 N -0.224 5.224 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.205 0.795 33 H 0.178 0.822 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.178 0.822 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.892 5.250 3.037 15.158 hybrid contribution 1.910 1.224 -0.341 2.294 sum -11.982 6.474 2.696 13.883 Atomic orbital electron populations 1.20958 0.85480 1.05209 1.04727 1.22422 0.99372 0.88050 0.88684 1.22358 0.93107 1.01054 1.02428 1.21987 0.95400 0.96767 0.89397 1.20101 0.88833 0.97548 1.13881 1.21393 0.89545 0.80984 0.72219 1.90813 1.67897 1.35727 1.47199 1.86512 1.22385 1.33066 1.83644 1.22364 0.75901 0.95334 1.05407 1.20699 0.82746 0.90309 0.78863 1.90203 1.57270 1.44435 1.53188 1.40992 1.04044 1.04763 1.59833 1.19732 1.17755 1.07131 1.07429 0.87976 1.26370 1.00778 0.98249 0.92741 1.70137 1.34140 1.39659 1.06399 0.85124 0.78038 0.78596 0.78060 1.18919 1.20604 1.17918 1.18605 0.93753 0.84492 0.97760 1.21071 0.94331 0.97524 1.01450 1.21168 1.00263 0.91872 1.00917 1.21258 0.93273 0.99375 1.04038 1.21253 0.96317 0.95970 1.00202 1.22810 1.02980 0.92469 1.05121 1.23226 0.89401 0.98126 0.88936 1.67736 1.09009 1.30670 1.14964 0.88445 0.90448 0.87313 0.79502 0.82191 0.87387 0.88359 0.91261 0.86372 0.84728 0.83836 0.84517 0.82240 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.16 71.23 0.72 -0.29 16 2 C 0.15 2.69 6.78 42.57 0.29 2.98 16 3 C -0.17 -2.53 9.72 22.32 0.22 -2.31 16 4 C -0.01 -0.21 9.72 22.74 0.22 0.01 16 5 C -0.20 -5.61 5.89 -20.00 -0.12 -5.73 16 6 C 0.51 17.91 7.91 70.33 0.56 18.46 16 7 O -0.53 -19.86 16.21 19.92 0.32 -19.54 16 8 O -0.34 -13.48 9.04 -49.84 -0.45 -13.93 16 9 C 0.09 3.66 4.78 71.24 0.34 4.00 16 10 C 0.48 23.81 7.65 87.66 0.67 24.48 16 11 O -0.57 -29.30 12.90 15.74 0.20 -29.10 16 12 N -0.39 -19.87 2.62 -458.91 -1.20 -21.07 16 13 C -0.39 -19.42 7.61 84.02 0.64 -18.78 16 14 H 0.10 4.74 7.85 -2.92 -0.02 4.72 16 15 C 0.03 1.26 3.49 84.91 0.30 1.56 16 16 N -0.87 -45.17 11.39 21.65 0.25 -44.92 16 17 Si 0.98 37.71 29.57 68.60 2.03 39.73 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 C 0.15 7.63 6.05 38.22 0.23 7.87 16 22 C -0.12 -5.86 7.87 22.41 0.18 -5.68 16 23 C -0.12 -4.92 10.04 22.25 0.22 -4.69 16 24 C -0.16 -5.84 10.04 22.30 0.22 -5.62 16 25 C -0.12 -4.72 10.04 22.25 0.22 -4.50 16 26 C -0.21 -10.27 9.06 22.41 0.20 -10.07 16 27 C 0.16 4.49 10.79 85.04 0.92 5.40 16 28 N -0.51 -12.86 10.25 -182.77 -1.87 -14.73 16 29 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.41 8.07 -2.39 -0.02 0.39 16 32 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.16 2.96 7.74 -2.91 -0.02 2.94 16 34 H 0.11 4.24 8.13 -2.39 -0.02 4.22 16 35 H 0.10 4.29 8.04 -2.39 -0.02 4.27 16 36 H 0.28 13.56 8.32 -92.71 -0.77 12.79 16 37 H 0.12 5.86 5.15 -2.91 -0.01 5.85 16 38 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 39 H 0.14 4.02 8.06 -2.91 -0.02 3.99 16 40 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.16 8.11 4.50 -64.47 -0.29 7.82 16 42 H 0.16 4.83 7.62 -2.91 -0.02 4.81 16 Total: -1.00 -67.21 364.84 6.09 -61.12 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.79 Total: 35.38 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.03 Total: 7.06 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -2.83 Total: -80.72 kcal Atomic # 8 Polarization: -62.64 SS G_CDS: 0.08 Total: -62.57 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.73 kcal Total: -67.21 6.09 -61.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023519169.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.818 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds