Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39720 * 120.19001 * 246.50519 * 3 2 1 5 5 C 1.37816 * 119.89778 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.29817 * 359.97438 * 5 4 3 7 7 C 1.38106 * 120.39445 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.08725 * 0.02562 * 7 6 5 9 9 O 1.35716 * 120.14777 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99837 * 359.95108 * 9 8 7 11 11 C 1.50703 * 109.47033 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99879 * 359.97438 * 13 11 10 15 15 C 1.50703 * 109.46858 * 90.00053 * 14 13 11 16 16 H 1.08000 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99643 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99522 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00341 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47322 * 90.00043 * 19 17 15 21 21 H 1.48501 * 109.47385 * 210.00236 * 19 17 15 22 22 H 1.48501 * 109.47024 * 330.00094 * 19 17 15 23 23 C 1.46489 * 119.99803 * 180.02562 * 13 11 10 24 24 C 1.50698 * 109.47581 * 90.00052 * 23 13 11 25 25 C 1.34518 * 125.78989 * 89.70928 * 24 23 13 26 26 C 1.41384 * 106.84019 * 179.89489 * 25 24 23 27 27 C 1.34511 * 106.83847 * 0.37087 * 26 25 24 28 28 O 1.34301 * 108.42511 * 359.77696 * 27 26 25 29 29 H 1.07996 * 120.05118 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.85446 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.80515 * 179.74693 * 6 5 4 32 32 H 1.07996 * 119.95728 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47109 * 300.00170 * 10 9 8 34 34 H 1.09000 * 109.46972 * 60.00231 * 10 9 8 35 35 H 1.09001 * 109.47340 * 209.99917 * 14 13 11 36 36 H 1.09000 * 109.47514 * 329.99925 * 14 13 11 37 37 H 0.97004 * 119.99336 * 180.02562 * 18 17 15 38 38 H 1.09010 * 109.47353 * 210.00028 * 23 13 11 39 39 H 1.09004 * 109.47540 * 329.99646 * 23 13 11 40 40 H 1.07999 * 126.57808 * 0.03489 * 25 24 23 41 41 H 1.07998 * 126.57715 * 180.17191 * 26 25 24 42 42 H 1.07999 * 125.78655 * 179.74865 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.4824 1.1076 5 6 4.6486 0.4807 1.1009 6 6 5.3415 0.0028 0.0008 7 6 4.6596 -0.4762 -1.1004 8 6 3.2732 -0.4810 -1.1115 9 8 2.6018 -0.9520 -2.1928 10 6 3.3874 -1.4276 -3.2876 11 6 2.4767 -1.9066 -4.3887 12 8 1.2734 -1.8461 -4.2496 13 7 2.9995 -2.4012 -5.5282 14 6 4.4530 -2.4726 -5.6968 15 6 4.9530 -3.8002 -5.1882 16 1 4.2576 -4.5190 -4.7807 17 6 6.2982 -4.0975 -5.2442 18 7 6.7344 -5.2563 -4.8009 19 14 7.5007 -2.8552 -5.9511 20 1 7.9950 -1.9714 -4.8649 21 1 8.6469 -3.5708 -6.5671 22 1 6.8163 -2.0356 -6.9831 23 6 2.1142 -2.8663 -6.5987 24 6 1.8101 -1.7226 -7.5317 25 6 2.5239 -1.3845 -8.6206 26 6 1.8855 -0.2622 -9.1967 27 6 0.8246 0.0235 -8.4207 28 8 0.7839 -0.8642 -7.4137 29 1 2.7342 0.8556 1.9675 30 1 5.1908 0.8529 1.9576 31 1 6.4215 0.0090 0.0025 32 1 5.2069 -0.8468 -1.9545 33 1 4.0157 -0.6194 -3.6621 34 1 4.0170 -2.2516 -2.9521 35 1 4.7018 -2.3711 -6.7531 36 1 4.9241 -1.6670 -5.1336 37 1 7.6809 -5.4653 -4.8400 38 1 2.6039 -3.6670 -7.1531 39 1 1.1857 -3.2390 -6.1662 40 1 3.4126 -1.8774 -8.9861 41 1 2.1928 0.2664 -10.0869 42 1 0.1246 0.8303 -8.5801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026911697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = 11.898116 kcal Electronic energy + Delta-G solvation = -28588.102571 eV Core-core repulsion = 24501.298984 eV Total energy + Delta-G solvation = -4086.803587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32304 -40.50673 -39.23159 -37.43876 -36.21295 -35.45771 -32.94784 -32.64499 -31.62306 -31.02354 -30.26466 -28.22794 -28.05888 -25.29345 -23.96617 -22.86913 -22.28282 -21.47227 -20.49112 -19.45581 -18.84981 -17.68487 -17.45214 -16.96678 -16.57571 -16.19278 -16.10461 -15.75345 -15.27903 -14.98608 -14.76264 -14.41539 -14.30543 -14.03143 -13.64149 -13.28495 -13.07878 -12.81172 -12.75529 -12.63500 -12.61337 -12.57374 -12.39474 -12.19859 -12.00367 -11.71790 -11.57665 -11.25342 -11.07491 -11.00058 -10.87716 -10.47858 -9.83890 -9.72139 -9.40830 -9.16985 -8.89913 -8.36963 -8.35169 -8.11161 -6.37940 -4.42577 0.70821 1.22503 1.85733 2.63874 2.83597 2.86002 2.95857 2.99773 3.03100 3.13051 3.15735 3.32501 3.82500 3.89459 3.94885 4.10727 4.67141 4.72038 4.88377 4.92148 4.95956 4.99100 5.14450 5.20965 5.21869 5.26172 5.33153 5.50846 5.59874 5.63644 5.90117 5.96439 6.04017 6.06190 6.09815 6.17051 6.26835 6.28986 6.40720 6.49339 6.68233 6.95929 7.19798 7.22796 7.37341 7.66452 7.79857 8.18257 8.56570 8.69143 9.19451 10.73957 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.004366 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.968477 B = 6412.010708 C = 9010.231343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.264 3.736 3 C -0.067 4.067 4 C -0.034 4.034 5 C -0.165 4.165 6 C -0.046 4.046 7 C -0.210 4.210 8 C 0.185 3.815 9 O -0.286 6.286 10 C 0.041 3.959 11 C 0.524 3.476 12 O -0.533 6.533 13 N -0.583 5.583 14 C 0.205 3.795 15 C -0.552 4.552 16 H 0.082 0.918 17 C 0.081 3.919 18 N -0.883 5.883 19 Si 0.867 3.133 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.263 1.263 23 C 0.199 3.801 24 C -0.019 4.019 25 C -0.203 4.203 26 C -0.218 4.218 27 C -0.048 4.048 28 O -0.165 6.165 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.041 0.959 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 11.644 2.398 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.051 4.051 3 C -0.071 4.071 4 C -0.055 4.055 5 C -0.183 4.183 6 C -0.065 4.065 7 C -0.228 4.228 8 C 0.135 3.865 9 O -0.197 6.197 10 C -0.036 4.036 11 C 0.310 3.690 12 O -0.410 6.410 13 N -0.316 5.316 14 C 0.085 3.915 15 C -0.590 4.590 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.520 5.520 19 Si 0.693 3.307 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.187 1.187 23 C 0.075 3.925 24 C -0.070 4.070 25 C -0.223 4.223 26 C -0.237 4.237 27 C -0.116 4.116 28 O -0.060 6.060 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -2.564 11.499 2.686 12.084 hybrid contribution 1.845 0.569 -0.858 2.113 sum -0.719 12.068 1.828 12.227 Atomic orbital electron populations 1.81186 1.12003 1.08891 1.07458 1.25312 0.92330 0.93700 0.93774 1.15301 0.84733 1.11451 0.95632 1.20976 0.94256 0.94874 0.95382 1.20961 0.93465 1.04253 0.99626 1.21218 1.00521 0.92987 0.91782 1.21410 0.92230 1.07135 1.02064 1.19038 0.90611 0.90778 0.86103 1.86116 1.35118 1.74815 1.23641 1.22753 0.93650 1.01424 0.85814 1.19779 0.88326 0.78071 0.82796 1.90717 1.14973 1.55319 1.80009 1.47815 1.08650 1.61252 1.13870 1.19941 0.74999 0.98172 0.98428 1.21359 0.93936 1.00530 1.43161 0.89968 1.24859 0.98010 0.95136 0.94376 1.69885 1.15480 1.21594 1.45021 0.86994 0.81609 0.81837 0.80281 1.19694 1.20658 1.18726 1.19742 0.96096 0.89954 0.86661 1.23206 0.89149 0.95720 0.98971 1.21670 1.02748 1.00006 0.97840 1.21792 0.98262 1.00615 1.03062 1.24006 1.01809 0.96399 0.89416 1.84129 1.43642 1.34591 1.43658 0.84504 0.84917 0.84850 0.83768 0.88895 0.86524 0.94107 0.95394 0.92108 0.86344 0.88685 0.83360 0.83786 0.78610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.57 18.54 41.84 0.78 -6.79 16 2 C 0.26 4.18 14.87 -22.47 -0.33 3.85 16 3 C -0.07 -0.88 5.75 -106.69 -0.61 -1.50 16 4 C -0.03 -0.33 9.76 -39.18 -0.38 -0.71 16 5 C -0.16 -1.35 10.02 -39.63 -0.40 -1.75 16 6 C -0.05 -0.43 10.03 -39.53 -0.40 -0.82 16 7 C -0.21 -2.49 9.03 -39.48 -0.36 -2.84 16 8 C 0.18 2.64 6.69 -38.71 -0.26 2.39 16 9 O -0.29 -5.04 9.10 -38.76 -0.35 -5.39 16 10 C 0.04 0.70 3.77 36.01 0.14 0.83 16 11 C 0.52 10.50 7.75 -10.98 -0.09 10.41 16 12 O -0.53 -12.31 16.08 -14.36 -0.23 -12.55 16 13 N -0.58 -11.16 2.44 -176.43 -0.43 -11.59 16 14 C 0.21 4.05 4.03 -5.19 -0.02 4.03 16 15 C -0.55 -13.05 9.84 -34.44 -0.34 -13.39 16 16 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 17 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.88 -23.74 13.96 55.43 0.77 -22.97 16 19 Si 0.87 17.89 27.47 -169.99 -4.67 13.22 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.26 -5.15 6.54 56.52 0.37 -4.78 16 23 C 0.20 3.45 5.93 -5.20 -0.03 3.42 16 24 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 25 C -0.20 -3.08 10.81 -39.70 -0.43 -3.51 16 26 C -0.22 -2.92 10.91 -39.70 -0.43 -3.36 16 27 C -0.05 -0.65 12.09 29.41 0.36 -0.29 16 28 O -0.17 -2.87 10.65 5.71 0.06 -2.80 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.66 6.30 -52.49 -0.33 1.33 16 33 H 0.09 1.34 6.92 -51.93 -0.36 0.98 16 34 H 0.12 1.96 7.52 -51.93 -0.39 1.57 16 35 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 36 H 0.03 0.52 5.87 -51.93 -0.30 0.21 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.12 1.88 8.07 -51.92 -0.42 1.46 16 39 H 0.09 1.69 7.42 -51.93 -0.39 1.30 16 40 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -32.39 376.59 -7.01 -39.40 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.69 Total: 5.70 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.93 Total: -1.89 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 1.12 Total: -41.35 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.52 Total: -20.74 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.67 Total: 13.22 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.39 -7.01 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026911697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.298 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds