Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39720 * 120.19001 * 246.50519 * 3 2 1 5 5 C 1.37816 * 119.89778 * 180.02562 * 4 3 2 6 6 C 1.38515 * 120.29817 * 359.97438 * 5 4 3 7 7 C 1.38106 * 120.39445 * 0.02562 * 6 5 4 8 8 C 1.38646 * 120.08725 * 0.02562 * 7 6 5 9 9 O 1.35716 * 120.14777 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99837 * 359.95108 * 9 8 7 11 11 C 1.50703 * 109.47033 * 180.02562 * 10 9 8 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99974 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99879 * 359.97438 * 13 11 10 15 15 C 1.50703 * 109.46858 * 90.00053 * 14 13 11 16 16 H 1.08000 * 120.00239 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99643 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99522 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00341 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.47322 * 90.00043 * 19 17 15 21 21 H 1.48501 * 109.47385 * 210.00236 * 19 17 15 22 22 H 1.48501 * 109.47024 * 330.00094 * 19 17 15 23 23 C 1.46489 * 119.99803 * 180.02562 * 13 11 10 24 24 C 1.50698 * 109.47581 * 90.00052 * 23 13 11 25 25 C 1.34518 * 125.78989 * 89.70928 * 24 23 13 26 26 C 1.41384 * 106.84019 * 179.89489 * 25 24 23 27 27 C 1.34511 * 106.83847 * 0.37087 * 26 25 24 28 28 O 1.34301 * 108.42511 * 359.77696 * 27 26 25 29 29 H 1.07996 * 120.05118 * 0.02562 * 4 3 2 30 30 H 1.07998 * 119.85446 * 180.02562 * 5 4 3 31 31 H 1.07997 * 119.80515 * 179.74693 * 6 5 4 32 32 H 1.07996 * 119.95728 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47109 * 300.00170 * 10 9 8 34 34 H 1.09000 * 109.46972 * 60.00231 * 10 9 8 35 35 H 1.09001 * 109.47340 * 209.99917 * 14 13 11 36 36 H 1.09000 * 109.47514 * 329.99925 * 14 13 11 37 37 H 0.97004 * 119.99336 * 180.02562 * 18 17 15 38 38 H 1.09010 * 109.47353 * 210.00028 * 23 13 11 39 39 H 1.09004 * 109.47540 * 329.99646 * 23 13 11 40 40 H 1.07999 * 126.57808 * 0.03489 * 25 24 23 41 41 H 1.07998 * 126.57715 * 180.17191 * 26 25 24 42 42 H 1.07999 * 125.78655 * 179.74865 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2704 0.4824 1.1076 5 6 4.6486 0.4807 1.1009 6 6 5.3415 0.0028 0.0008 7 6 4.6596 -0.4762 -1.1004 8 6 3.2732 -0.4810 -1.1115 9 8 2.6018 -0.9520 -2.1928 10 6 3.3874 -1.4276 -3.2876 11 6 2.4767 -1.9066 -4.3887 12 8 1.2734 -1.8461 -4.2496 13 7 2.9995 -2.4012 -5.5282 14 6 4.4530 -2.4726 -5.6968 15 6 4.9530 -3.8002 -5.1882 16 1 4.2576 -4.5190 -4.7807 17 6 6.2982 -4.0975 -5.2442 18 7 6.7344 -5.2563 -4.8009 19 14 7.5007 -2.8552 -5.9511 20 1 7.9950 -1.9714 -4.8649 21 1 8.6469 -3.5708 -6.5671 22 1 6.8163 -2.0356 -6.9831 23 6 2.1142 -2.8663 -6.5987 24 6 1.8101 -1.7226 -7.5317 25 6 2.5239 -1.3845 -8.6206 26 6 1.8855 -0.2622 -9.1967 27 6 0.8246 0.0235 -8.4207 28 8 0.7839 -0.8642 -7.4137 29 1 2.7342 0.8556 1.9675 30 1 5.1908 0.8529 1.9576 31 1 6.4215 0.0090 0.0025 32 1 5.2069 -0.8468 -1.9545 33 1 4.0157 -0.6194 -3.6621 34 1 4.0170 -2.2516 -2.9521 35 1 4.7018 -2.3711 -6.7531 36 1 4.9241 -1.6670 -5.1336 37 1 7.6809 -5.4653 -4.8400 38 1 2.6039 -3.6670 -7.1531 39 1 1.1857 -3.2390 -6.1662 40 1 3.4126 -1.8774 -8.9861 41 1 2.1928 0.2664 -10.0869 42 1 0.1246 0.8303 -8.5801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026911697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -6.462979 kcal Electronic energy + Delta-G solvation = -28588.898768 eV Core-core repulsion = 24501.298984 eV Total energy + Delta-G solvation = -4087.599784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.49869 -41.65588 -40.60925 -38.54901 -37.42823 -37.07391 -34.67637 -33.91361 -32.65995 -32.22625 -31.22506 -29.84032 -29.35686 -26.59835 -24.89780 -24.53795 -23.28684 -22.62314 -21.67513 -20.62652 -20.13485 -19.17709 -18.79240 -18.23233 -17.98284 -17.56451 -17.38508 -16.93359 -16.47145 -16.18927 -15.89033 -15.86195 -15.33868 -15.25718 -14.97911 -14.69766 -14.41885 -14.16438 -14.06147 -13.97201 -13.76663 -13.69317 -13.60275 -13.48836 -13.28486 -13.10843 -12.59825 -12.54992 -12.45802 -12.16239 -12.12378 -12.04582 -11.68944 -11.02485 -10.83699 -10.75118 -10.02836 -9.78222 -9.45148 -9.31732 -8.26736 -6.36916 -0.19143 0.38830 0.66357 1.39612 1.44285 1.45900 1.50544 1.57088 1.62125 1.75922 1.95162 2.16919 2.37876 2.54170 2.86775 2.91230 3.06655 3.37409 3.76521 3.82421 3.92960 4.01360 4.09104 4.14713 4.16616 4.29651 4.32505 4.43718 4.48310 4.51290 4.58494 4.79768 4.87969 4.91377 5.01122 5.16815 5.20077 5.33965 5.38760 5.44808 5.50187 5.62275 5.72513 6.07616 6.14913 6.23896 6.42459 6.47796 6.70246 7.02530 7.29932 8.88884 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.004366 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.968477 B = 6412.010708 C = 9010.231343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.280 3.720 3 C -0.090 4.090 4 C -0.023 4.023 5 C -0.147 4.147 6 C -0.036 4.036 7 C -0.219 4.219 8 C 0.155 3.845 9 O -0.319 6.319 10 C 0.051 3.949 11 C 0.514 3.486 12 O -0.574 6.574 13 N -0.583 5.583 14 C 0.213 3.787 15 C -0.547 4.547 16 H 0.034 0.966 17 C 0.028 3.972 18 N -0.938 5.938 19 Si 0.934 3.066 20 H -0.252 1.252 21 H -0.290 1.290 22 H -0.239 1.239 23 C 0.196 3.804 24 C -0.049 4.049 25 C -0.196 4.196 26 C -0.219 4.219 27 C -0.047 4.047 28 O -0.197 6.197 29 H 0.165 0.835 30 H 0.175 0.825 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.078 0.922 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.915 14.900 2.309 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.034 4.034 3 C -0.095 4.095 4 C -0.044 4.044 5 C -0.164 4.164 6 C -0.055 4.055 7 C -0.237 4.237 8 C 0.106 3.894 9 O -0.232 6.232 10 C -0.026 4.026 11 C 0.302 3.698 12 O -0.454 6.454 13 N -0.314 5.314 14 C 0.092 3.908 15 C -0.585 4.585 16 H 0.052 0.948 17 C -0.172 4.172 18 N -0.576 5.576 19 Si 0.756 3.244 20 H -0.176 1.176 21 H -0.216 1.216 22 H -0.162 1.162 23 C 0.074 3.926 24 C -0.100 4.100 25 C -0.216 4.216 26 C -0.238 4.238 27 C -0.114 4.114 28 O -0.093 6.093 29 H 0.182 0.818 30 H 0.192 0.808 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.139 0.861 34 H 0.130 0.870 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.096 0.904 40 H 0.178 0.822 41 H 0.194 0.806 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.265 14.769 2.592 14.997 hybrid contribution 0.963 -0.465 -0.765 1.315 sum 1.228 14.304 1.827 14.472 Atomic orbital electron populations 1.81173 1.13580 1.11127 1.09268 1.25903 0.93033 0.92189 0.92262 1.15633 0.83317 1.13513 0.97007 1.21370 0.95113 0.93260 0.94614 1.21459 0.92764 1.01951 1.00252 1.21668 1.02146 0.90931 0.90727 1.21536 0.91060 1.07764 1.03383 1.19349 0.91845 0.92571 0.85642 1.86062 1.36458 1.75907 1.24739 1.22630 0.92746 1.02083 0.85158 1.20427 0.88332 0.77553 0.83516 1.90681 1.16802 1.57124 1.80797 1.47898 1.08694 1.60639 1.14193 1.19841 0.75243 0.96545 0.99141 1.21427 0.93345 1.01301 1.42460 0.94789 1.25711 0.99937 0.96986 0.94561 1.70052 1.15958 1.24310 1.47313 0.85924 0.78574 0.79455 0.80474 1.17584 1.21630 1.16210 1.19742 0.95265 0.91025 0.86603 1.22983 0.90502 0.96517 1.00018 1.21946 1.02594 1.00201 0.96897 1.22166 0.97736 1.00004 1.03899 1.24869 1.02453 0.96013 0.88077 1.84105 1.44212 1.35586 1.45392 0.81790 0.80755 0.81671 0.83739 0.86143 0.87005 0.92745 0.92937 0.92147 0.85487 0.90397 0.82175 0.80603 0.74977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.01 18.54 19.01 0.35 -17.65 16 2 C 0.28 9.18 14.87 88.33 1.31 10.49 16 3 C -0.09 -2.34 5.75 -21.21 -0.12 -2.46 16 4 C -0.02 -0.37 9.76 22.53 0.22 -0.16 16 5 C -0.15 -1.70 10.02 22.24 0.22 -1.47 16 6 C -0.04 -0.52 10.03 22.30 0.22 -0.30 16 7 C -0.22 -4.79 9.03 22.34 0.20 -4.59 16 8 C 0.15 4.42 6.69 22.83 0.15 4.57 16 9 O -0.32 -11.73 9.10 -71.34 -0.65 -12.38 16 10 C 0.05 1.77 3.77 71.24 0.27 2.04 16 11 C 0.51 21.49 7.75 87.66 0.68 22.17 16 12 O -0.57 -28.23 16.08 16.00 0.26 -27.97 16 13 N -0.58 -22.86 2.44 -830.50 -2.03 -24.88 16 14 C 0.21 8.24 4.03 85.63 0.35 8.58 16 15 C -0.55 -26.38 9.84 25.60 0.25 -26.13 16 16 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 17 C 0.03 1.38 5.47 84.65 0.46 1.84 16 18 N -0.94 -51.66 13.96 21.45 0.30 -51.36 16 19 Si 0.93 35.30 27.47 68.60 1.88 37.19 16 20 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 21 H -0.29 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.24 -8.07 6.54 99.48 0.65 -7.42 16 23 C 0.20 7.13 5.93 85.63 0.51 7.64 16 24 C -0.05 -1.67 6.90 24.83 0.17 -1.50 16 25 C -0.20 -5.63 10.81 22.19 0.24 -5.39 16 26 C -0.22 -5.26 10.91 22.19 0.24 -5.02 16 27 C -0.05 -1.18 12.09 66.97 0.81 -0.37 16 28 O -0.20 -6.85 10.65 -2.47 -0.03 -6.87 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 31 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 32 H 0.14 3.08 6.30 -2.91 -0.02 3.06 16 33 H 0.12 3.37 6.92 -2.39 -0.02 3.35 16 34 H 0.11 3.90 7.52 -2.39 -0.02 3.88 16 35 H 0.05 1.99 7.13 -2.39 -0.02 1.98 16 36 H 0.05 1.80 5.87 -2.39 -0.01 1.79 16 37 H 0.27 13.89 8.31 -92.70 -0.77 13.12 16 38 H 0.13 4.22 8.07 -2.38 -0.02 4.20 16 39 H 0.08 3.03 7.42 -2.38 -0.02 3.01 16 40 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.18 3.01 8.06 -2.91 -0.02 2.98 16 42 H 0.23 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -76.65 376.59 7.29 -69.36 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.01 Total: 24.62 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.19 Total: 9.95 kcal Atomic # 7 Polarization: -92.52 SS G_CDS: -1.37 Total: -93.90 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.42 Total: -47.22 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 1.88 Total: 37.19 kcal Total: -76.65 7.29 -69.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026911697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.897 kcal (2) G-P(sol) polarization free energy of solvation -76.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds