Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38631 * 119.54920 * 2 1 4 4 C 1.38580 * 119.36144 * 179.97438 * 3 2 1 5 5 C 1.38638 * 118.48801 * 0.25334 * 4 3 2 6 6 C 1.39313 * 119.05440 * 359.47976 * 5 4 3 7 7 C 1.48068 * 119.72279 * 180.27124 * 6 5 4 8 8 O 1.21432 * 120.00291 * 0.26137 * 7 6 5 9 9 O 1.34686 * 119.99944 * 180.25408 * 7 6 5 10 10 C 1.45198 * 116.99957 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.46642 * 180.02562 * 10 9 7 12 12 O 1.21275 * 120.00354 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99662 * 179.97438 * 11 10 9 14 14 C 1.39237 * 119.99962 * 175.70935 * 13 11 10 15 15 C 1.39486 * 119.83346 * 215.01518 * 14 13 11 16 16 C 1.36378 * 120.16727 * 179.75794 * 15 14 13 17 17 C 1.40865 * 119.82513 * 0.52075 * 16 15 14 18 18 C 1.41161 * 120.16178 * 179.71733 * 17 16 15 19 19 H 1.07996 * 119.99677 * 214.80223 * 18 17 16 20 20 C 1.39902 * 119.99647 * 34.79892 * 18 17 16 21 21 N 1.30870 * 120.00432 * 355.55999 * 20 18 17 22 22 Si 1.86808 * 119.99619 * 175.56210 * 20 18 17 23 23 H 1.48499 * 109.47146 * 59.99920 * 22 20 18 24 24 H 1.48506 * 109.46665 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.46984 * 299.99536 * 22 20 18 26 26 C 1.40868 * 119.67834 * 359.73161 * 17 16 15 27 27 C 1.36375 * 119.82457 * 0.02562 * 26 17 16 28 28 N 1.31483 * 119.54866 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47478 * 89.99907 * 1 2 3 30 30 H 1.08994 * 109.47385 * 210.00079 * 1 2 3 31 31 H 1.09005 * 109.46980 * 330.00125 * 1 2 3 32 32 H 1.07997 * 120.31947 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.75803 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.47273 * 179.75214 * 5 4 3 35 35 H 1.08999 * 109.46894 * 299.99555 * 10 9 7 36 36 H 1.08996 * 109.46910 * 60.00034 * 10 9 7 37 37 H 0.97000 * 120.00122 * 355.71629 * 13 11 10 38 38 H 1.07991 * 119.91464 * 0.02562 * 15 14 13 39 39 H 1.08001 * 120.08512 * 180.24966 * 16 15 14 40 40 H 0.97005 * 120.00404 * 179.97438 * 21 20 18 41 41 H 1.08001 * 120.08711 * 179.97438 * 26 17 16 42 42 H 1.08001 * 119.91407 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1906 1.2060 0.0000 4 6 3.5764 1.2015 0.0005 5 6 4.2337 -0.0192 -0.0043 6 6 3.4822 -1.1923 0.0015 7 6 4.1690 -2.5041 0.0025 8 8 5.3822 -2.5543 0.0031 9 8 3.4479 -3.6417 0.0030 10 6 4.1878 -4.8910 0.0045 11 6 3.2211 -6.0471 0.0042 12 8 2.0264 -5.8387 0.0023 13 7 3.6844 -7.3128 0.0049 14 6 2.7944 -8.3798 0.0948 15 6 3.1581 -9.5297 0.7957 16 6 2.2898 -10.5769 0.8923 17 6 1.0272 -10.4995 0.2726 18 6 0.1252 -11.5816 0.3630 19 1 -0.5248 -11.8135 -0.4677 20 6 0.0735 -12.3535 1.5286 21 7 0.9199 -12.1281 2.5009 22 14 -1.2038 -13.7062 1.6970 23 1 -1.0138 -14.7042 0.6138 24 1 -1.0490 -14.3718 3.0155 25 1 -2.5636 -13.1183 1.5954 26 6 0.6690 -9.3370 -0.4380 27 6 1.5460 -8.2960 -0.5216 28 7 2.1553 -1.1438 0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6485 2.1400 -0.0004 33 1 4.1318 2.1277 0.0001 34 1 5.3128 -0.0601 -0.0081 35 1 4.8156 -4.9426 -0.8850 36 1 4.8144 -4.9410 0.8950 37 1 4.6378 -7.4804 -0.0570 38 1 4.1281 -9.5890 1.2668 39 1 2.5713 -11.4649 1.4387 40 1 0.8838 -12.6631 3.3093 41 1 -0.2972 -9.2708 -0.9159 42 1 1.2731 -7.4043 -1.0663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027513513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -74.488686 kcal Electronic energy + Delta-G solvation = -27063.667419 eV Core-core repulsion = 22973.117819 eV Total energy + Delta-G solvation = -4090.549600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.09969 -41.32747 -40.65829 -39.09857 -37.65930 -36.20235 -34.78842 -34.09232 -33.68329 -31.59779 -31.30078 -29.78231 -28.78280 -26.82365 -25.91008 -23.61591 -23.30300 -22.71010 -22.20464 -21.40498 -19.55574 -19.27192 -18.87913 -17.94546 -17.85950 -17.71196 -17.22488 -16.99467 -16.80426 -16.34940 -15.76012 -15.58720 -15.46394 -14.98945 -14.93464 -14.48835 -14.19631 -14.07110 -13.98136 -13.90660 -13.61703 -13.31847 -13.25921 -13.12786 -12.92594 -12.89280 -12.77810 -12.49257 -12.12740 -11.99569 -11.81089 -11.41752 -11.25142 -11.01362 -10.89192 -10.67732 -10.60252 -10.12102 -9.49149 -8.77885 -8.51876 -6.34935 -0.61550 0.17378 0.72592 1.06733 1.11686 1.19909 1.39406 1.42317 1.51202 1.66337 2.23122 2.28293 2.67394 2.78679 2.99013 3.51257 3.61285 3.67542 3.80590 3.87951 3.95107 3.99360 4.01604 4.35854 4.38284 4.49988 4.51970 4.72955 4.78115 4.90188 4.92334 5.05963 5.07608 5.10110 5.12385 5.17906 5.29778 5.39848 5.58023 5.67571 5.86678 5.98111 6.10608 6.29192 6.36677 6.59366 6.66125 6.83297 6.95004 6.96766 7.25004 8.40793 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.001919 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.956890 B =14589.790410 C =15575.983085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.106 3.894 3 C -0.123 4.123 4 C -0.071 4.071 5 C -0.109 4.109 6 C 0.061 3.939 7 C 0.523 3.477 8 O -0.510 6.510 9 O -0.332 6.332 10 C 0.056 3.944 11 C 0.500 3.500 12 O -0.555 6.555 13 N -0.634 5.634 14 C 0.017 3.983 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.068 3.932 18 C -0.497 4.497 19 H 0.073 0.927 20 C 0.027 3.973 21 N -0.840 5.840 22 Si 0.989 3.011 23 H -0.257 1.257 24 H -0.268 1.268 25 H -0.266 1.266 26 C -0.222 4.222 27 C -0.097 4.097 28 N -0.478 5.478 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.186 0.814 33 H 0.191 0.809 34 H 0.162 0.838 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.423 0.577 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.285 0.715 41 H 0.096 0.904 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.145 25.985 -2.996 27.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.036 4.036 3 C -0.142 4.142 4 C -0.096 4.096 5 C -0.129 4.129 6 C -0.074 4.074 7 C 0.368 3.632 8 O -0.398 6.398 9 O -0.246 6.246 10 C -0.021 4.021 11 C 0.287 3.713 12 O -0.433 6.433 13 N -0.281 5.281 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.180 4.180 17 C 0.066 3.934 18 C -0.527 4.527 19 H 0.092 0.908 20 C -0.185 4.185 21 N -0.467 5.467 22 Si 0.810 3.190 23 H -0.182 1.182 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.242 4.242 27 C -0.117 4.117 28 N -0.191 5.191 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.129 0.871 32 H 0.203 0.797 33 H 0.208 0.792 34 H 0.180 0.820 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.261 0.739 38 H 0.147 0.853 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.325 25.207 -2.753 26.394 hybrid contribution 0.287 -0.484 0.149 0.582 sum 7.612 24.724 -2.604 26.000 Atomic orbital electron populations 1.20860 0.86874 1.04452 1.04151 1.21983 0.98607 0.87953 0.95018 1.22788 0.95448 0.99946 0.96066 1.22146 0.94578 0.98580 0.94340 1.22335 1.02738 0.91308 0.96551 1.20007 0.90431 0.90715 1.06268 1.21268 0.85200 0.84578 0.72204 1.90816 1.14220 1.87913 1.46869 1.86736 1.40479 1.14275 1.83088 1.22836 0.92455 0.79115 1.07701 1.20629 0.89348 0.84400 0.76938 1.90741 1.18333 1.85013 1.49205 1.42620 1.10552 1.03068 1.71860 1.17265 0.93225 0.89932 1.07167 1.20571 1.00282 0.93443 0.99071 1.21194 0.93270 0.99460 1.04026 1.18063 0.92341 0.92129 0.90866 1.19710 1.19330 1.12189 1.01502 0.90846 1.26759 0.98119 0.99155 0.94473 1.69812 1.33651 1.37156 1.06116 0.85142 0.78012 0.77237 0.78596 1.18162 1.19181 1.19050 1.20926 0.99509 0.94615 1.09124 1.20520 0.94305 0.97566 0.99290 1.67447 1.08890 1.32330 1.10474 0.89346 0.92217 0.87117 0.79701 0.79202 0.82025 0.85024 0.85310 0.73895 0.85295 0.86091 0.90388 0.88606 0.87678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.17 71.23 0.72 -0.72 16 2 C 0.11 1.90 6.78 42.70 0.29 2.19 16 3 C -0.12 -1.17 9.75 22.45 0.22 -0.95 16 4 C -0.07 -0.62 10.17 22.45 0.23 -0.39 16 5 C -0.11 -1.73 9.63 22.62 0.22 -1.51 16 6 C 0.06 1.50 6.75 41.87 0.28 1.78 16 7 C 0.52 14.73 7.95 70.43 0.56 15.29 16 8 O -0.51 -14.02 16.11 20.06 0.32 -13.69 16 9 O -0.33 -10.70 9.57 -49.57 -0.47 -11.18 16 10 C 0.06 1.45 5.95 71.24 0.42 1.88 16 11 C 0.50 17.75 7.74 87.66 0.68 18.42 16 12 O -0.56 -25.92 13.92 15.79 0.22 -25.70 16 13 N -0.63 -21.20 5.30 -303.11 -1.61 -22.81 16 14 C 0.02 0.77 6.31 38.57 0.24 1.01 16 15 C -0.11 -5.11 9.90 22.14 0.22 -4.89 16 16 C -0.16 -8.39 8.62 22.48 0.19 -8.19 16 17 C 0.07 3.84 5.55 -21.27 -0.12 3.72 16 18 C -0.50 -27.65 9.02 23.39 0.21 -27.44 16 19 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 20 C 0.03 1.40 5.42 85.24 0.46 1.86 16 21 N -0.84 -44.69 10.60 21.82 0.23 -44.45 16 22 Si 0.99 39.55 29.56 68.60 2.03 41.58 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 26 C -0.22 -11.87 9.74 22.48 0.22 -11.65 16 27 C -0.10 -4.83 8.61 22.13 0.19 -4.64 16 28 N -0.48 -12.80 10.03 -173.12 -1.74 -14.54 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 0.70 8.08 -2.38 -0.02 0.68 16 32 H 0.19 0.18 8.06 -2.91 -0.02 0.15 16 33 H 0.19 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.16 2.09 7.64 -2.91 -0.02 2.07 16 35 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.42 9.90 8.82 -92.71 -0.82 9.08 16 38 H 0.13 4.76 8.06 -2.92 -0.02 4.74 16 39 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 40 H 0.29 13.81 8.30 -92.70 -0.77 13.05 16 41 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.11 5.27 6.22 -2.91 -0.02 5.25 16 Total: -1.00 -80.09 372.29 4.49 -75.60 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: 0.26 Total: 29.44 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.24 Total: -14.24 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.11 Total: -81.81 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: 0.07 Total: -50.57 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -80.09 4.49 -75.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027513513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.108 kcal (2) G-P(sol) polarization free energy of solvation -80.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds