Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47265 * 300.00180 * 3 2 1 6 6 H 1.48502 * 109.47338 * 60.00220 * 3 2 1 7 7 C 1.39910 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99822 * 175.58206 * 7 2 1 9 9 C 1.41135 * 120.00001 * 355.58913 * 7 2 1 10 10 C 1.40880 * 120.16169 * 214.76839 * 9 7 2 11 11 C 1.36356 * 119.83122 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16439 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83220 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00085 * 35.31590 * 13 12 11 15 15 O 1.21556 * 120.00303 * 355.71307 * 14 13 12 16 16 C 1.47808 * 119.99939 * 175.71276 * 14 13 12 17 17 C 1.39636 * 120.12132 * 0.02562 * 16 14 13 18 18 C 1.37951 * 119.96400 * 179.97438 * 17 16 14 19 19 C 1.38298 * 120.21222 * 359.74494 * 18 17 16 20 20 C 1.38822 * 120.23922 * 0.51096 * 19 18 17 21 21 O 1.35912 * 119.98414 * 179.76985 * 20 19 18 22 22 C 1.42899 * 116.99757 * 359.71871 * 21 20 19 23 23 C 1.50705 * 109.46999 * 180.02562 * 22 21 20 24 24 N 1.34774 * 119.99508 * 179.72693 * 23 22 21 25 25 O 1.21274 * 119.99782 * 359.97438 * 23 22 21 26 26 C 1.38488 * 120.03196 * 359.48964 * 20 19 18 27 27 C 1.39511 * 120.33065 * 0.25102 * 12 11 10 28 28 C 1.36360 * 120.16336 * 359.48328 * 27 12 11 29 29 H 0.96998 * 120.00304 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08163 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91775 * 179.97438 * 11 10 9 32 32 H 0.97009 * 119.99816 * 215.32312 * 13 12 11 33 33 H 1.08000 * 120.01405 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.89873 * 179.97438 * 18 17 16 35 35 H 1.07991 * 119.88303 * 180.27731 * 19 18 17 36 36 H 1.09004 * 109.47101 * 60.00847 * 22 21 20 37 37 H 1.09000 * 109.47638 * 300.00371 * 22 21 20 38 38 H 0.97007 * 119.99326 * 180.27077 * 24 23 22 39 39 H 0.96991 * 120.00851 * 0.27737 * 24 23 22 40 40 H 1.07997 * 120.10501 * 180.23218 * 26 20 19 41 41 H 1.08000 * 119.91640 * 179.74543 * 27 12 11 42 42 H 1.08006 * 120.08266 * 180.25296 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3466 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2129 -0.0715 9 6 1.3058 -2.4321 0.0951 10 6 1.8651 -3.5182 0.7968 11 6 1.1807 -4.6944 0.8835 12 6 -0.0699 -4.8240 0.2790 13 7 -0.7619 -6.0274 0.3713 14 6 -0.6808 -6.7669 1.4951 15 8 0.0573 -6.4225 2.3974 16 6 -1.4895 -7.9967 1.6305 17 6 -2.3378 -8.3950 0.5954 18 6 -3.0907 -9.5437 0.7250 19 6 -3.0044 -10.3062 1.8756 20 6 -2.1678 -9.9154 2.9122 21 8 -2.0906 -10.6662 4.0425 22 6 -2.9025 -11.8408 4.0978 23 6 -2.6865 -12.5392 5.4157 24 7 -3.3566 -13.6748 5.6942 25 8 -1.9130 -12.0768 6.2273 26 6 -1.4075 -8.7641 2.7928 27 6 -0.6275 -3.7547 -0.4225 28 6 0.0426 -2.5706 -0.5130 29 1 -0.4850 0.8400 0.0004 30 1 2.8333 -3.4193 1.2649 31 1 1.6083 -5.5280 1.4207 32 1 -1.3026 -6.3343 -0.3733 33 1 -2.4045 -7.8041 -0.3061 34 1 -3.7468 -9.8506 -0.0760 35 1 -3.5928 -11.2068 1.9696 36 1 -2.6289 -12.5103 3.2823 37 1 -3.9520 -11.5620 4.0025 38 1 -3.2205 -14.1222 6.5441 39 1 -3.9749 -14.0449 5.0450 40 1 -0.7535 -8.4610 3.5969 41 1 -1.5943 -3.8637 -0.8913 42 1 -0.3921 -1.7424 -1.0529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028440821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -54.429411 kcal Electronic energy + Delta-G solvation = -26978.132836 eV Core-core repulsion = 22888.453072 eV Total energy + Delta-G solvation = -4089.679764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.82586 -39.99081 -39.19662 -37.58981 -36.84519 -34.50425 -34.27360 -32.98778 -31.43903 -30.74505 -29.56019 -28.76180 -28.50801 -25.37841 -23.72563 -22.66228 -21.80137 -21.26167 -20.70382 -19.85016 -18.68695 -18.16309 -17.34783 -17.21859 -16.80432 -16.46918 -16.43434 -16.15110 -15.37775 -15.12780 -14.81827 -14.50748 -14.35658 -14.13299 -13.88468 -13.79736 -13.13139 -13.07019 -12.70303 -12.65644 -12.20019 -12.06385 -11.69845 -11.47850 -11.38441 -11.31054 -11.15186 -10.96098 -10.72896 -10.45206 -10.28645 -10.03148 -9.49946 -9.45274 -9.23247 -9.14773 -8.88432 -8.54002 -7.54017 -6.85724 -6.61432 -4.33424 0.68363 1.17251 2.04280 2.21263 2.59841 3.00171 3.10100 3.11249 3.16593 3.23666 3.31500 3.70074 3.88412 3.99427 4.17090 4.37855 4.48156 4.55193 4.57674 4.71009 4.86971 4.94080 5.19327 5.30254 5.66152 5.70592 5.94486 6.08785 6.16069 6.18050 6.20266 6.33127 6.46791 6.66418 6.74726 6.93395 7.03510 7.07701 7.20894 7.30360 7.64885 7.67762 7.74251 7.87097 8.07298 8.24637 8.32253 8.62298 8.72118 8.93462 9.00365 10.29655 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.001793 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.634850 B =15615.955574 C =16227.141483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.641 5.641 14 C 0.539 3.461 15 O -0.521 6.521 16 C -0.080 4.080 17 C -0.125 4.125 18 C -0.086 4.086 19 C -0.194 4.194 20 C 0.119 3.881 21 O -0.288 6.288 22 C 0.039 3.961 23 C 0.518 3.482 24 N -0.852 5.852 25 O -0.513 6.513 26 C -0.089 4.089 27 C -0.119 4.119 28 C -0.141 4.141 29 H 0.277 0.723 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.395 0.605 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.409 0.591 39 H 0.403 0.597 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.757 -24.687 0.912 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.092 4.092 13 N -0.284 5.284 14 C 0.326 3.674 15 O -0.399 6.399 16 C -0.083 4.083 17 C -0.144 4.144 18 C -0.104 4.104 19 C -0.213 4.213 20 C 0.074 3.926 21 O -0.200 6.200 22 C -0.040 4.040 23 C 0.301 3.699 24 N -0.419 5.419 25 O -0.387 6.387 26 C -0.108 4.108 27 C -0.139 4.139 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.230 0.770 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.241 0.759 39 H 0.231 0.769 40 H 0.165 0.835 41 H 0.110 0.890 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.751 -23.757 2.142 26.591 hybrid contribution -0.617 0.043 -0.410 0.742 sum -12.368 -23.714 1.733 26.802 Atomic orbital electron populations 1.69765 1.07299 1.28633 1.38135 1.25889 0.94944 1.01203 0.92551 0.86143 0.80614 0.80816 0.78380 1.18562 1.20008 1.19981 1.19547 0.94803 0.90202 1.44460 0.90506 1.17750 0.92295 0.92034 0.88176 1.20812 1.01273 0.94895 1.05485 1.20423 0.92724 0.97922 0.99310 1.17254 0.94305 0.85694 1.11897 1.42860 1.48490 1.21201 1.15838 1.18141 0.83026 0.83589 0.82676 1.90780 1.38715 1.70451 1.39912 1.19888 0.98162 0.95675 0.94607 1.21289 0.96922 0.97524 0.98636 1.20840 0.98408 0.94139 0.97011 1.21339 1.02481 1.02449 0.95029 1.18815 0.96180 0.91883 0.85731 1.86190 1.62586 1.35196 1.36064 1.22437 0.96804 0.87913 0.96827 1.20074 0.80530 0.81045 0.88231 1.43650 1.47625 1.27316 1.23284 1.90845 1.34798 1.64310 1.48713 1.20508 0.99577 0.92157 0.98599 1.20310 0.98329 0.93101 1.02161 1.21184 0.97291 0.95521 1.02130 0.91180 0.88501 0.87360 0.76981 0.85187 0.85039 0.85278 0.88732 0.88720 0.75920 0.76895 0.83499 0.89028 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.20 10.60 55.55 0.59 -20.61 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.14 29.56 -169.99 -5.03 14.12 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.46 -12.34 9.02 -37.86 -0.34 -12.68 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.20 -5.25 9.74 -39.26 -0.38 -5.63 16 11 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 12 C 0.00 0.02 6.30 -83.60 -0.53 -0.51 16 13 N -0.64 -11.50 5.25 -10.61 -0.06 -11.56 16 14 C 0.54 9.97 7.60 -12.35 -0.09 9.88 16 15 O -0.52 -11.80 13.76 5.32 0.07 -11.72 16 16 C -0.08 -1.15 5.87 -104.99 -0.62 -1.77 16 17 C -0.12 -1.33 9.54 -39.16 -0.37 -1.70 16 18 C -0.09 -0.72 10.03 -39.66 -0.40 -1.11 16 19 C -0.19 -1.63 9.04 -39.34 -0.36 -1.98 16 20 C 0.12 1.38 6.68 -39.27 -0.26 1.12 16 21 O -0.29 -3.39 9.67 -39.37 -0.38 -3.77 16 22 C 0.04 0.25 5.22 36.01 0.19 0.44 16 23 C 0.52 4.18 8.18 -10.98 -0.09 4.09 16 24 N -0.85 -2.58 8.87 31.22 0.28 -2.31 16 25 O -0.51 -7.18 17.34 -14.35 -0.25 -7.43 16 26 C -0.09 -1.27 9.53 -39.01 -0.37 -1.65 16 27 C -0.12 -2.71 9.90 -39.78 -0.39 -3.11 16 28 C -0.14 -3.64 8.61 -39.26 -0.34 -3.98 16 29 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 30 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.11 2.62 6.22 -52.49 -0.33 2.29 16 32 H 0.40 5.46 6.86 -40.82 -0.28 5.18 16 33 H 0.13 1.12 6.41 -52.49 -0.34 0.78 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.60 6.28 -52.49 -0.33 0.27 16 36 H 0.09 0.33 7.65 -51.93 -0.40 -0.06 16 37 H 0.09 0.34 7.67 -51.93 -0.40 -0.06 16 38 H 0.41 1.02 8.93 -40.82 -0.36 0.65 16 39 H 0.40 -0.26 8.83 -40.82 -0.36 -0.62 16 40 H 0.15 2.34 7.65 -52.49 -0.40 1.93 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 3.50 6.13 -52.48 -0.32 3.17 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -36.52 364.14 -9.00 -45.52 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -4.33 Total: 9.49 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -5.39 Total: -17.21 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.81 Total: -34.48 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.56 Total: -22.92 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.52 -9.00 -45.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028440821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.910 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds