Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48498 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47265 * 300.00180 * 3 2 1 6 6 H 1.48502 * 109.47338 * 60.00220 * 3 2 1 7 7 C 1.39910 * 120.00353 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99822 * 175.58206 * 7 2 1 9 9 C 1.41135 * 120.00001 * 355.58913 * 7 2 1 10 10 C 1.40880 * 120.16169 * 214.76839 * 9 7 2 11 11 C 1.36356 * 119.83122 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16439 * 0.02562 * 11 10 9 13 13 N 1.39129 * 119.83220 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00085 * 35.31590 * 13 12 11 15 15 O 1.21556 * 120.00303 * 355.71307 * 14 13 12 16 16 C 1.47808 * 119.99939 * 175.71276 * 14 13 12 17 17 C 1.39636 * 120.12132 * 0.02562 * 16 14 13 18 18 C 1.37951 * 119.96400 * 179.97438 * 17 16 14 19 19 C 1.38298 * 120.21222 * 359.74494 * 18 17 16 20 20 C 1.38822 * 120.23922 * 0.51096 * 19 18 17 21 21 O 1.35912 * 119.98414 * 179.76985 * 20 19 18 22 22 C 1.42899 * 116.99757 * 359.71871 * 21 20 19 23 23 C 1.50705 * 109.46999 * 180.02562 * 22 21 20 24 24 N 1.34774 * 119.99508 * 179.72693 * 23 22 21 25 25 O 1.21274 * 119.99782 * 359.97438 * 23 22 21 26 26 C 1.38488 * 120.03196 * 359.48964 * 20 19 18 27 27 C 1.39511 * 120.33065 * 0.25102 * 12 11 10 28 28 C 1.36360 * 120.16336 * 359.48328 * 27 12 11 29 29 H 0.96998 * 120.00304 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.08163 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.91775 * 179.97438 * 11 10 9 32 32 H 0.97009 * 119.99816 * 215.32312 * 13 12 11 33 33 H 1.08000 * 120.01405 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.89873 * 179.97438 * 18 17 16 35 35 H 1.07991 * 119.88303 * 180.27731 * 19 18 17 36 36 H 1.09004 * 109.47101 * 60.00847 * 22 21 20 37 37 H 1.09000 * 109.47638 * 300.00371 * 22 21 20 38 38 H 0.97007 * 119.99326 * 180.27077 * 24 23 22 39 39 H 0.96991 * 120.00851 * 0.27737 * 24 23 22 40 40 H 1.07997 * 120.10501 * 180.23218 * 26 20 19 41 41 H 1.08000 * 119.91640 * 179.74543 * 27 12 11 42 42 H 1.08006 * 120.08266 * 180.25296 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3466 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8839 2.3965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2129 -0.0715 9 6 1.3058 -2.4321 0.0951 10 6 1.8651 -3.5182 0.7968 11 6 1.1807 -4.6944 0.8835 12 6 -0.0699 -4.8240 0.2790 13 7 -0.7619 -6.0274 0.3713 14 6 -0.6808 -6.7669 1.4951 15 8 0.0573 -6.4225 2.3974 16 6 -1.4895 -7.9967 1.6305 17 6 -2.3378 -8.3950 0.5954 18 6 -3.0907 -9.5437 0.7250 19 6 -3.0044 -10.3062 1.8756 20 6 -2.1678 -9.9154 2.9122 21 8 -2.0906 -10.6662 4.0425 22 6 -2.9025 -11.8408 4.0978 23 6 -2.6865 -12.5392 5.4157 24 7 -3.3566 -13.6748 5.6942 25 8 -1.9130 -12.0768 6.2273 26 6 -1.4075 -8.7641 2.7928 27 6 -0.6275 -3.7547 -0.4225 28 6 0.0426 -2.5706 -0.5130 29 1 -0.4850 0.8400 0.0004 30 1 2.8333 -3.4193 1.2649 31 1 1.6083 -5.5280 1.4207 32 1 -1.3026 -6.3343 -0.3733 33 1 -2.4045 -7.8041 -0.3061 34 1 -3.7468 -9.8506 -0.0760 35 1 -3.5928 -11.2068 1.9696 36 1 -2.6289 -12.5103 3.2823 37 1 -3.9520 -11.5620 4.0025 38 1 -3.2205 -14.1222 6.5441 39 1 -3.9749 -14.0449 5.0450 40 1 -0.7535 -8.4610 3.5969 41 1 -1.5943 -3.8637 -0.8913 42 1 -0.3921 -1.7424 -1.0529 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028440821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -81.362435 kcal Electronic energy + Delta-G solvation = -26979.300740 eV Core-core repulsion = 22888.453072 eV Total energy + Delta-G solvation = -4090.847668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.76353 -41.12956 -40.12305 -39.13416 -37.97262 -36.25617 -34.80986 -34.78897 -32.36612 -31.74947 -31.42991 -30.46389 -29.12840 -27.08374 -25.00731 -23.49387 -23.34960 -22.64854 -21.95151 -21.11570 -19.78852 -19.24641 -18.66626 -18.35867 -17.76095 -17.38496 -17.26797 -17.04132 -16.94727 -16.25683 -16.22717 -15.72094 -15.52361 -15.39508 -14.95203 -14.81429 -14.69496 -14.47405 -14.03239 -13.88407 -13.64225 -13.48296 -13.26378 -12.92912 -12.82589 -12.75684 -12.49113 -12.18853 -12.10493 -11.78769 -11.40776 -11.25913 -11.13246 -10.91208 -10.75666 -10.66721 -10.09189 -9.49081 -9.33999 -8.75640 -8.51982 -6.34555 -0.27271 0.36554 0.82304 1.12364 1.39586 1.45880 1.48121 1.54858 1.62660 1.87488 2.22241 2.25892 2.75020 2.84747 2.85791 3.60833 3.69631 3.71205 3.91389 4.02495 4.11438 4.14250 4.15378 4.31085 4.38598 4.48413 4.52455 4.86172 4.90991 5.09776 5.12315 5.17419 5.27974 5.32224 5.34535 5.40643 5.59111 5.68299 5.81944 5.88531 5.99954 6.11860 6.24725 6.36847 6.44793 6.63393 6.66906 6.95145 6.97315 7.26907 7.28704 8.41189 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027892 B = 0.001793 C = 0.001725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.634850 B =15615.955574 C =16227.141483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.068 3.932 10 C -0.221 4.221 11 C -0.098 4.098 12 C 0.016 3.984 13 N -0.631 5.631 14 C 0.537 3.463 15 O -0.575 6.575 16 C -0.103 4.103 17 C -0.119 4.119 18 C -0.072 4.072 19 C -0.169 4.169 20 C 0.114 3.886 21 O -0.326 6.326 22 C 0.031 3.969 23 C 0.512 3.488 24 N -0.824 5.824 25 O -0.589 6.589 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.157 4.157 29 H 0.286 0.714 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.419 0.581 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.413 0.587 39 H 0.425 0.575 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.423 -27.391 -1.266 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.195 1.195 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.241 4.241 11 C -0.118 4.118 12 C -0.078 4.078 13 N -0.276 5.276 14 C 0.327 3.673 15 O -0.456 6.456 16 C -0.107 4.107 17 C -0.138 4.138 18 C -0.089 4.089 19 C -0.187 4.187 20 C 0.069 3.931 21 O -0.239 6.239 22 C -0.047 4.047 23 C 0.297 3.703 24 N -0.391 5.391 25 O -0.468 6.468 26 C -0.143 4.143 27 C -0.134 4.134 28 C -0.177 4.177 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.258 0.742 33 H 0.171 0.829 34 H 0.198 0.802 35 H 0.198 0.802 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.246 0.754 39 H 0.257 0.743 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.502 -26.559 -0.091 30.752 hybrid contribution 0.351 0.547 0.321 0.725 sum -15.152 -26.012 0.229 30.104 Atomic orbital electron populations 1.69816 1.08558 1.30000 1.38373 1.26745 0.95837 1.04302 0.91521 0.85044 0.79023 0.76052 0.78841 1.18482 1.18496 1.19508 1.19756 0.94863 0.91327 1.46767 0.90948 1.18068 0.93482 0.92618 0.89279 1.20915 1.01633 0.95489 1.06096 1.20525 0.93926 0.97447 0.99948 1.17318 0.93495 0.87281 1.09667 1.42707 1.48299 1.19716 1.16894 1.18906 0.82293 0.84418 0.81660 1.90749 1.41088 1.72010 1.41708 1.19493 1.00118 0.94526 0.96522 1.21595 0.95702 0.98639 0.97865 1.21404 0.97316 0.92279 0.97903 1.21897 1.00323 1.03343 0.93146 1.18808 0.96402 0.91055 0.86834 1.86149 1.64203 1.37038 1.36538 1.22883 0.98147 0.86818 0.96822 1.20569 0.79750 0.81678 0.88315 1.43465 1.46316 1.25453 1.23840 1.90823 1.38358 1.66603 1.51064 1.20365 1.01156 0.94598 0.98177 1.20576 0.99397 0.91862 1.01539 1.21185 0.97351 0.96470 1.02704 0.90377 0.88713 0.87861 0.74204 0.82939 0.80216 0.80247 0.84859 0.84947 0.75447 0.74280 0.87463 0.85183 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.79 10.60 21.82 0.23 -44.56 16 2 C 0.03 1.46 5.42 85.24 0.46 1.92 16 3 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.50 -27.88 9.02 23.39 0.21 -27.67 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.07 3.84 5.55 -21.28 -0.12 3.73 16 10 C -0.22 -12.04 9.74 22.48 0.22 -11.82 16 11 C -0.10 -5.03 8.61 22.14 0.19 -4.84 16 12 C 0.02 0.72 6.30 38.60 0.24 0.96 16 13 N -0.63 -22.29 5.25 -305.74 -1.60 -23.89 16 14 C 0.54 20.46 7.60 86.78 0.66 21.12 16 15 O -0.57 -27.85 13.76 -3.89 -0.05 -27.91 16 16 C -0.10 -2.94 5.87 -20.10 -0.12 -3.06 16 17 C -0.12 -2.10 9.54 22.54 0.21 -1.89 16 18 C -0.07 -0.75 10.03 22.22 0.22 -0.53 16 19 C -0.17 -1.89 9.04 22.42 0.20 -1.69 16 20 C 0.11 2.45 6.68 22.47 0.15 2.60 16 21 O -0.33 -7.40 9.67 -73.52 -0.71 -8.11 16 22 C 0.03 0.29 5.22 71.24 0.37 0.66 16 23 C 0.51 7.51 8.18 87.66 0.72 8.23 16 24 N -0.82 -2.80 8.87 -173.54 -1.54 -4.34 16 25 O -0.59 -17.13 17.34 16.03 0.28 -16.85 16 26 C -0.12 -3.68 9.53 22.64 0.22 -3.47 16 27 C -0.11 -5.16 9.90 22.14 0.22 -4.94 16 28 C -0.16 -8.30 8.61 22.48 0.19 -8.11 16 29 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 30 H 0.09 4.99 8.06 -2.91 -0.02 4.96 16 31 H 0.10 5.33 6.22 -2.91 -0.02 5.32 16 32 H 0.42 10.56 6.86 -92.70 -0.64 9.93 16 33 H 0.15 1.91 6.41 -2.91 -0.02 1.89 16 34 H 0.18 0.32 8.06 -2.91 -0.02 0.30 16 35 H 0.18 0.18 6.28 -2.91 -0.02 0.16 16 36 H 0.13 0.19 7.65 -2.38 -0.02 0.17 16 37 H 0.13 0.22 7.67 -2.39 -0.02 0.20 16 38 H 0.41 1.28 8.93 -92.70 -0.83 0.45 16 39 H 0.42 -2.33 8.83 -92.71 -0.82 -3.15 16 40 H 0.11 3.92 7.65 -2.91 -0.02 3.90 16 41 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.12 6.64 6.13 -2.91 -0.02 6.63 16 Total: -1.00 -90.51 364.14 1.73 -88.78 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -1.16 Total: 23.82 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.26 Total: -28.80 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -2.91 Total: -72.79 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: -0.49 Total: -52.86 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -90.51 1.73 -88.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028440821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.413 kcal (2) G-P(sol) polarization free energy of solvation -90.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds