Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39759 * 120.09388 * 284.05614 * 3 2 1 5 5 C 1.37727 * 119.90625 * 180.02562 * 4 3 2 6 6 C 1.38968 * 120.09296 * 359.97438 * 5 4 3 7 7 O 1.35758 * 119.90376 * 180.02562 * 6 5 4 8 8 C 1.42905 * 116.99785 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46904 * 89.99597 * 12 11 9 14 14 H 1.07993 * 120.00490 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99735 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99825 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47634 * 59.99423 * 17 15 13 19 19 H 1.48503 * 109.47157 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47225 * 299.99175 * 17 15 13 21 21 C 1.46499 * 119.99707 * 359.97438 * 11 9 8 22 22 C 1.50697 * 109.46871 * 90.00413 * 21 11 9 23 23 C 1.34513 * 125.78899 * 90.00275 * 22 21 11 24 24 C 1.41388 * 106.83986 * 179.97438 * 23 22 21 25 25 C 1.34513 * 106.84143 * 359.97438 * 24 23 22 26 26 O 1.34306 * 108.42014 * 359.73797 * 25 24 23 27 27 C 1.38959 * 120.19188 * 0.27627 * 6 5 4 28 28 C 1.37739 * 120.09316 * 359.45271 * 27 6 5 29 29 H 1.08003 * 120.04887 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.95808 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.47187 * 300.00259 * 8 7 6 32 32 H 1.09001 * 109.46558 * 60.00306 * 8 7 6 33 33 H 1.08991 * 109.47410 * 209.99714 * 12 11 9 34 34 H 1.09007 * 109.47039 * 329.99988 * 12 11 9 35 35 H 0.97004 * 119.99848 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.46740 * 210.00435 * 21 11 9 37 37 H 1.09001 * 109.47266 * 330.00158 * 21 11 9 38 38 H 1.07996 * 126.58382 * 0.02932 * 23 22 21 39 39 H 1.08003 * 126.57563 * 179.97438 * 24 23 22 40 40 H 1.07998 * 125.79067 * 180.02562 * 25 24 23 41 41 H 1.08002 * 119.95677 * 179.69885 * 27 6 5 42 42 H 1.07996 * 120.05365 * 180.24657 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 -0.2927 1.1730 5 6 4.6462 -0.2905 1.1687 6 6 5.3389 0.0024 0.0002 7 8 6.6965 0.0030 0.0002 8 6 7.3451 0.3120 -1.2351 9 6 8.8391 0.2642 -1.0437 10 8 9.3028 -0.0082 0.0434 11 7 9.6601 0.5240 -2.0805 12 6 11.1125 0.4770 -1.8946 13 6 11.6100 -0.9173 -2.1765 14 1 10.9142 -1.6909 -2.4656 15 6 12.9538 -1.2053 -2.0652 16 7 13.8014 -0.2632 -1.7136 17 14 13.5707 -2.9333 -2.4153 18 1 13.2391 -3.3034 -3.8147 19 1 15.0429 -2.9811 -2.2267 20 1 12.9207 -3.8893 -1.4832 21 6 9.0999 0.8525 -3.3938 22 6 8.9073 2.3434 -3.4991 23 6 9.8150 3.2233 -3.9587 24 6 9.2197 4.5034 -3.8824 25 6 7.9836 4.3292 -3.3813 26 8 7.7977 3.0181 -3.1567 27 6 4.6460 0.2997 -1.1671 28 6 3.2687 0.2943 -1.1731 29 1 2.7314 -0.5209 2.0815 30 1 5.1887 -0.5167 2.0748 31 1 7.0525 -0.4165 -1.9913 32 1 7.0518 1.3104 -1.5596 33 1 11.5893 1.1783 -2.5792 34 1 11.3563 0.7491 -0.8676 35 1 14.7468 -0.4657 -1.6357 36 1 9.7836 0.5184 -4.1742 37 1 8.1389 0.3525 -3.5142 38 1 10.8077 2.9956 -4.3180 39 1 9.6709 5.4413 -4.1711 40 1 7.2614 5.1104 -3.1957 41 1 5.1882 0.5316 -2.0719 42 1 2.7308 0.5216 -2.0816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031676222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -9.771631 kcal Electronic energy + Delta-G solvation = -28143.917385 eV Core-core repulsion = 24056.174127 eV Total energy + Delta-G solvation = -4087.743258 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.41899 -41.52892 -40.47027 -38.82397 -37.17543 -36.89931 -34.86747 -33.83645 -32.32852 -31.71843 -31.49427 -30.37055 -28.44586 -26.77617 -25.02438 -24.29700 -23.55058 -22.59707 -21.68459 -20.34427 -19.86445 -19.34705 -18.85500 -18.30358 -17.87971 -17.30477 -17.24473 -16.86474 -16.55385 -16.08347 -15.84963 -15.56988 -15.14662 -15.00648 -14.90327 -14.64236 -14.48923 -14.31190 -14.03508 -13.89954 -13.72482 -13.53967 -13.50885 -13.31453 -13.26625 -13.08061 -12.99489 -12.67780 -12.53066 -12.20071 -12.04100 -11.89674 -11.75097 -10.80875 -10.72303 -10.61425 -10.08313 -9.73597 -9.36761 -9.28722 -8.20683 -6.34638 -0.15621 0.34499 0.75938 1.40810 1.44829 1.50766 1.57261 1.58928 1.66390 1.81584 1.94019 2.14396 2.40175 2.66093 2.89486 2.93960 3.10687 3.42779 3.73557 3.83236 3.91455 3.94659 4.06867 4.15124 4.18224 4.21068 4.41246 4.45841 4.57496 4.62306 4.93581 4.97859 5.01481 5.03573 5.08702 5.22415 5.25297 5.26244 5.34458 5.47905 5.59654 5.64807 5.77859 6.05261 6.21935 6.26519 6.50340 6.54944 6.74429 7.20770 7.38087 8.86912 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010504 B = 0.003016 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.125544 B = 9280.511992 C =11302.314661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.287 3.713 3 C -0.084 4.084 4 C -0.018 4.018 5 C -0.163 4.163 6 C 0.146 3.854 7 O -0.313 6.313 8 C 0.051 3.949 9 C 0.501 3.499 10 O -0.574 6.574 11 N -0.591 5.591 12 C 0.266 3.734 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.965 3.035 18 H -0.257 1.257 19 H -0.283 1.283 20 H -0.278 1.278 21 C 0.186 3.814 22 C -0.048 4.048 23 C -0.208 4.208 24 C -0.233 4.233 25 C -0.030 4.030 26 O -0.180 6.180 27 C -0.210 4.210 28 C -0.015 4.015 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.030 0.970 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.243 0.757 41 H 0.161 0.839 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.819 6.158 -5.544 20.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.026 4.026 3 C -0.088 4.088 4 C -0.038 4.038 5 C -0.182 4.182 6 C 0.100 3.900 7 O -0.225 6.225 8 C -0.027 4.027 9 C 0.289 3.711 10 O -0.453 6.453 11 N -0.323 5.323 12 C 0.146 3.854 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.190 4.190 16 N -0.567 5.567 17 Si 0.790 3.210 18 H -0.181 1.181 19 H -0.209 1.209 20 H -0.204 1.204 21 C 0.063 3.937 22 C -0.099 4.099 23 C -0.228 4.228 24 C -0.252 4.252 25 C -0.097 4.097 26 O -0.076 6.076 27 C -0.228 4.228 28 C -0.035 4.035 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.048 0.952 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.259 0.741 41 H 0.178 0.822 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.242 5.863 -4.677 21.587 hybrid contribution 1.800 -0.378 -0.068 1.840 sum -18.442 5.485 -4.745 19.817 Atomic orbital electron populations 1.81294 1.13383 1.11424 1.08916 1.25762 0.92541 0.91966 0.92375 1.15986 0.83472 1.12680 0.96654 1.21109 0.92250 0.93019 0.97457 1.20523 0.93704 1.06423 0.97501 1.19727 0.81492 0.93224 0.95606 1.86146 1.17536 1.84357 1.34465 1.22718 0.88484 1.04981 0.86488 1.20770 0.89288 0.77002 0.84085 1.90702 1.78444 1.48973 1.27181 1.48179 1.07610 1.66836 1.09659 1.18778 0.74700 0.96379 0.95592 1.21681 0.93064 0.96382 1.46950 0.91993 1.25828 0.96990 1.01478 0.94702 1.70048 1.03549 1.34934 1.48214 0.85501 0.76955 0.79233 0.79341 1.18121 1.20880 1.20403 1.20194 1.02408 0.85401 0.85669 1.22976 0.86367 0.95871 1.04713 1.21918 1.00987 0.93714 1.06171 1.22143 0.96438 0.98931 1.07653 1.24803 0.99603 0.83063 1.02254 1.83946 1.37049 1.19779 1.66863 1.21432 0.95154 1.07996 0.98243 1.21180 0.92914 0.92235 0.97158 0.82275 0.83948 0.85366 0.86347 0.95220 0.98695 0.92481 0.86118 0.85595 0.84292 0.81889 0.74145 0.82195 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.84 18.54 19.00 0.35 -10.49 16 2 C 0.29 5.04 15.33 88.33 1.35 6.40 16 3 C -0.08 -1.16 5.74 -21.30 -0.12 -1.29 16 4 C -0.02 -0.24 9.75 22.52 0.22 -0.02 16 5 C -0.16 -2.87 9.97 22.32 0.22 -2.65 16 6 C 0.15 2.98 6.69 22.62 0.15 3.13 16 7 O -0.31 -8.92 9.66 -71.80 -0.69 -9.61 16 8 C 0.05 1.30 3.77 71.24 0.27 1.57 16 9 C 0.50 19.77 7.75 87.66 0.68 20.45 16 10 O -0.57 -29.66 16.08 16.00 0.26 -29.41 16 11 N -0.59 -22.93 2.44 -830.50 -2.03 -24.96 16 12 C 0.27 13.56 5.16 85.63 0.44 14.00 16 13 C -0.54 -29.42 9.39 25.60 0.24 -29.18 16 14 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 15 C 0.01 0.52 5.46 84.66 0.46 0.98 16 16 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 17 Si 0.97 43.16 29.54 68.60 2.03 45.19 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.19 4.96 5.74 85.63 0.49 5.46 16 22 C -0.05 -1.27 6.85 24.83 0.17 -1.10 16 23 C -0.21 -5.72 10.81 22.19 0.24 -5.48 16 24 C -0.23 -5.10 10.91 22.19 0.24 -4.86 16 25 C -0.03 -0.54 12.09 66.97 0.81 0.27 16 26 O -0.18 -3.97 9.56 -2.55 -0.02 -4.00 16 27 C -0.21 -2.93 9.01 22.32 0.20 -2.72 16 28 C -0.01 -0.17 9.75 22.52 0.22 0.05 16 29 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.13 2.28 6.92 -2.39 -0.02 2.27 16 32 H 0.12 2.44 6.42 -2.39 -0.02 2.42 16 33 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 34 H -0.01 -0.31 7.42 -2.38 -0.02 -0.33 16 35 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.12 3.22 8.07 -2.39 -0.02 3.20 16 37 H 0.13 2.22 6.44 -2.39 -0.02 2.21 16 38 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.16 1.55 6.28 -2.91 -0.02 1.53 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -79.76 378.67 7.53 -72.22 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.07 Total: 10.31 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 6.29 Total: 4.99 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.39 Total: -89.70 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -0.46 Total: -43.01 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -79.76 7.53 -72.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031676222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.452 kcal (2) G-P(sol) polarization free energy of solvation -79.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds