Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39670 * 120.11995 * 284.37778 * 3 2 1 5 5 C 1.37953 * 119.95360 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.21574 * 0.04683 * 5 4 3 7 7 C 1.38816 * 120.25137 * 359.97438 * 6 5 4 8 8 O 1.35912 * 119.98397 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99733 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.46784 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00446 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99846 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99734 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47422 * 90.00687 * 13 12 10 15 15 H 1.08006 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00182 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47358 * 59.99608 * 18 16 14 20 20 H 1.48501 * 109.47440 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47129 * 299.99671 * 18 16 14 22 22 C 1.46502 * 119.99917 * 0.02562 * 12 10 9 23 23 C 1.50697 * 109.47416 * 89.99491 * 22 12 10 24 24 C 1.34512 * 125.78889 * 89.71260 * 23 22 12 25 25 C 1.41381 * 106.84044 * 179.88860 * 24 23 22 26 26 C 1.34516 * 106.84269 * 0.37772 * 25 24 23 27 27 O 1.34303 * 125.79071 * 270.02832 * 23 22 12 28 28 C 1.38485 * 120.03682 * 0.02562 * 7 6 5 29 29 H 1.07996 * 120.02104 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.89064 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.87444 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46737 * 299.99527 * 9 8 7 33 33 H 1.08992 * 109.47269 * 60.00356 * 9 8 7 34 34 H 1.09003 * 109.46537 * 210.00229 * 13 12 10 35 35 H 1.08999 * 109.47068 * 329.99548 * 13 12 10 36 36 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46899 * 209.99780 * 22 12 10 38 38 H 1.08996 * 109.46895 * 329.99280 * 22 12 10 39 39 H 1.07998 * 126.57942 * 0.02919 * 24 23 22 40 40 H 1.07998 * 126.57830 * 180.16388 * 25 24 23 41 41 H 1.07993 * 125.78907 * 179.74849 * 26 25 24 42 42 H 1.08005 * 120.10676 * 179.72856 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.2990 1.1703 5 6 4.6486 -0.2979 1.1663 6 6 5.3409 0.0000 0.0068 7 6 4.6530 0.2996 -1.1611 8 8 5.3389 0.5921 -2.2974 9 6 6.7655 0.5722 -2.2172 10 6 7.3491 0.9191 -3.5626 11 8 6.6156 1.1594 -4.4981 12 7 8.6862 0.9625 -3.7263 13 6 9.2534 1.3004 -5.0341 14 6 9.4469 2.7919 -5.1276 15 1 9.1742 3.4250 -4.2962 16 6 9.9721 3.3484 -6.2746 17 7 10.3046 2.5775 -7.2868 18 14 10.2113 5.1973 -6.3907 19 1 11.1361 5.6452 -5.3187 20 1 10.7864 5.5398 -7.7163 21 1 8.9008 5.8771 -6.2298 22 6 9.5723 0.6718 -2.5965 23 6 9.8772 -0.8037 -2.5638 24 6 10.9022 -1.4091 -3.1901 25 6 10.8100 -2.7873 -2.8884 26 6 9.7293 -2.9428 -2.1026 27 8 9.1683 -1.7379 -1.9094 28 6 3.2682 0.3015 -1.1688 29 1 2.7315 -0.5323 2.0774 30 1 5.1896 -0.5302 2.0717 31 1 6.4209 -0.0011 0.0098 32 1 7.0981 1.3013 -1.4784 33 1 7.0990 -0.4226 -1.9218 34 1 10.2151 0.8011 -5.1529 35 1 8.5740 0.9720 -5.8206 36 1 10.6738 2.9690 -8.0939 37 1 10.5003 1.2322 -2.7090 38 1 9.0829 0.9623 -1.6669 39 1 11.6529 -0.9334 -3.8036 40 1 11.4770 -3.5663 -3.2269 41 1 9.3731 -3.8778 -1.6964 42 1 2.7318 0.5387 -2.0758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045101791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = 11.330629 kcal Electronic energy + Delta-G solvation = -28175.735011 eV Core-core repulsion = 24088.906816 eV Total energy + Delta-G solvation = -4086.828195 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45802 -40.55287 -39.17030 -37.80577 -36.38438 -35.35617 -32.94115 -32.79956 -31.71400 -30.72736 -30.28525 -28.91909 -26.89677 -25.52940 -24.23037 -22.94452 -22.56636 -21.61493 -20.64257 -19.63193 -18.88530 -17.55868 -17.20876 -16.72454 -16.47230 -16.39246 -16.17605 -15.85891 -15.53097 -15.24694 -14.71510 -14.46715 -14.26309 -14.20949 -13.76087 -13.56337 -13.34406 -12.98006 -12.82477 -12.74617 -12.64489 -12.50461 -12.40421 -12.14952 -12.08957 -11.71909 -11.35655 -11.29450 -11.18572 -10.97724 -10.66964 -10.26402 -9.84753 -9.77676 -9.34904 -9.14920 -8.53460 -8.51874 -8.43596 -7.98642 -6.12753 -4.18568 0.43319 1.07212 1.76112 2.32528 2.66691 2.67517 2.81642 2.95039 3.20746 3.27565 3.33005 3.36312 3.57778 3.59417 3.97774 4.37637 4.43117 4.66167 4.72400 4.75925 4.79853 4.88701 5.03535 5.08779 5.12420 5.14384 5.17569 5.22509 5.37721 5.54576 5.72392 5.83499 5.89820 5.97781 6.00341 6.07328 6.17649 6.22722 6.60023 6.80262 7.14251 7.17192 7.20015 7.30163 7.35632 7.82201 8.07472 8.11694 8.71181 8.87540 9.47030 10.95439 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.003178 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.506865 B = 8807.993381 C =11086.870490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.259 3.741 3 C 0.008 3.992 4 C -0.114 4.114 5 C -0.078 4.078 6 C -0.182 4.182 7 C 0.138 3.862 8 O -0.282 6.282 9 C 0.037 3.963 10 C 0.512 3.488 11 O -0.507 6.507 12 N -0.589 5.589 13 C 0.249 3.751 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.892 5.892 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.189 3.811 23 C -0.034 4.034 24 C -0.187 4.187 25 C -0.213 4.213 26 C -0.047 4.047 27 O -0.181 6.181 28 C -0.103 4.103 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.265 0.735 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.199 0.801 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.877 -9.974 18.558 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.056 4.056 3 C 0.005 3.995 4 C -0.135 4.135 5 C -0.096 4.096 6 C -0.201 4.201 7 C 0.091 3.909 8 O -0.194 6.194 9 C -0.042 4.042 10 C 0.296 3.704 11 O -0.381 6.381 12 N -0.323 5.323 13 C 0.131 3.869 14 C -0.572 4.572 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.064 3.936 23 C -0.085 4.085 24 C -0.207 4.207 25 C -0.232 4.232 26 C -0.115 4.115 27 O -0.077 6.077 28 C -0.124 4.124 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.163 0.837 41 H 0.216 0.784 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.299 -9.696 17.780 20.703 hybrid contribution 1.165 0.680 -0.143 1.356 sum -3.134 -9.017 17.636 20.054 Atomic orbital electron populations 1.81257 1.11997 1.08471 1.07348 1.25593 0.92520 0.93779 0.93731 1.15620 0.84192 1.04912 0.94792 1.21038 0.94315 1.01331 0.96783 1.20863 0.93384 0.97490 0.97866 1.21593 1.01164 1.04529 0.92825 1.18839 0.91395 0.94772 0.85897 1.86221 1.18786 1.83895 1.30471 1.22812 0.79325 1.03205 0.98855 1.19716 0.83062 0.78886 0.88713 1.90744 1.58490 1.47116 1.41781 1.48270 1.03639 1.67127 1.13215 1.19386 0.94185 0.95927 0.77432 1.21359 1.42627 0.91965 1.01213 0.92257 1.24919 0.95209 0.98437 0.95314 1.69916 1.42701 1.35376 1.05070 0.86546 0.78542 0.85050 0.77229 1.20162 1.21165 1.20090 1.19943 0.98083 0.84918 0.90645 1.23248 0.93954 0.92324 0.98973 1.21725 1.01426 0.93829 1.03758 1.21853 1.00733 0.97218 1.03398 1.23947 0.96318 0.87457 1.03733 1.83957 1.48653 1.16006 1.59108 1.20376 0.91275 1.02461 0.98300 0.84924 0.84568 0.84475 0.89187 0.88849 0.94448 0.93587 0.92516 0.86070 0.89967 0.83100 0.83672 0.78441 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.39 18.54 41.84 0.78 -4.61 16 2 C 0.26 2.80 15.33 -22.47 -0.34 2.46 16 3 C 0.01 0.08 5.73 -106.95 -0.61 -0.54 16 4 C -0.11 -0.82 9.75 -39.15 -0.38 -1.20 16 5 C -0.08 -0.52 10.02 -39.67 -0.40 -0.92 16 6 C -0.18 -1.58 9.03 -39.35 -0.36 -1.93 16 7 C 0.14 1.59 6.68 -39.28 -0.26 1.33 16 8 O -0.28 -4.27 9.67 -39.37 -0.38 -4.65 16 9 C 0.04 0.51 3.77 36.01 0.14 0.65 16 10 C 0.51 10.10 7.75 -10.98 -0.09 10.01 16 11 O -0.51 -12.63 16.08 -14.35 -0.23 -12.86 16 12 N -0.59 -11.35 2.44 -176.44 -0.43 -11.78 16 13 C 0.25 6.06 5.16 -5.20 -0.03 6.03 16 14 C -0.53 -14.16 9.39 -34.44 -0.32 -14.48 16 15 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 18 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C 0.19 2.65 5.74 -5.19 -0.03 2.62 16 23 C -0.03 -0.47 6.85 -35.63 -0.24 -0.71 16 24 C -0.19 -2.60 10.81 -39.70 -0.43 -3.03 16 25 C -0.21 -2.52 10.91 -39.70 -0.43 -2.95 16 26 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 27 O -0.18 -2.26 9.55 5.71 0.05 -2.21 16 28 C -0.10 -1.11 9.69 -39.01 -0.38 -1.48 16 29 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.14 0.54 8.06 -52.48 -0.42 0.12 16 31 H 0.14 0.98 6.28 -52.49 -0.33 0.65 16 32 H 0.09 0.99 6.92 -51.93 -0.36 0.63 16 33 H 0.09 1.12 6.44 -51.93 -0.33 0.79 16 34 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.12 1.65 8.07 -51.93 -0.42 1.24 16 38 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 39 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 378.68 15.07 5.71 5.71 Total: -1.00 -34.35 378.68 -7.36 -41.72 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -4.66 Total: 0.13 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -3.91 Total: -2.65 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.08 Total: -41.14 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.56 Total: -19.72 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.35 -7.36 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045101791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.046 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds