Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39670 * 120.11995 * 284.37778 * 3 2 1 5 5 C 1.37953 * 119.95360 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.21574 * 0.04683 * 5 4 3 7 7 C 1.38816 * 120.25137 * 359.97438 * 6 5 4 8 8 O 1.35912 * 119.98397 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99733 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.46784 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00446 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99846 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99734 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47422 * 90.00687 * 13 12 10 15 15 H 1.08006 * 119.99766 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00263 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99921 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00182 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47358 * 59.99608 * 18 16 14 20 20 H 1.48501 * 109.47440 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47129 * 299.99671 * 18 16 14 22 22 C 1.46502 * 119.99917 * 0.02562 * 12 10 9 23 23 C 1.50697 * 109.47416 * 89.99491 * 22 12 10 24 24 C 1.34512 * 125.78889 * 89.71260 * 23 22 12 25 25 C 1.41381 * 106.84044 * 179.88860 * 24 23 22 26 26 C 1.34516 * 106.84269 * 0.37772 * 25 24 23 27 27 O 1.34303 * 125.79071 * 270.02832 * 23 22 12 28 28 C 1.38485 * 120.03682 * 0.02562 * 7 6 5 29 29 H 1.07996 * 120.02104 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.89064 * 180.02562 * 5 4 3 31 31 H 1.07998 * 119.87444 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46737 * 299.99527 * 9 8 7 33 33 H 1.08992 * 109.47269 * 60.00356 * 9 8 7 34 34 H 1.09003 * 109.46537 * 210.00229 * 13 12 10 35 35 H 1.08999 * 109.47068 * 329.99548 * 13 12 10 36 36 H 0.97003 * 120.00213 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.46899 * 209.99780 * 22 12 10 38 38 H 1.08996 * 109.46895 * 329.99280 * 22 12 10 39 39 H 1.07998 * 126.57942 * 0.02919 * 24 23 22 40 40 H 1.07998 * 126.57830 * 180.16388 * 25 24 23 41 41 H 1.07993 * 125.78907 * 179.74849 * 26 25 24 42 42 H 1.08005 * 120.10676 * 179.72856 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.2990 1.1703 5 6 4.6486 -0.2979 1.1663 6 6 5.3409 0.0000 0.0068 7 6 4.6530 0.2996 -1.1611 8 8 5.3389 0.5921 -2.2974 9 6 6.7655 0.5722 -2.2172 10 6 7.3491 0.9191 -3.5626 11 8 6.6156 1.1594 -4.4981 12 7 8.6862 0.9625 -3.7263 13 6 9.2534 1.3004 -5.0341 14 6 9.4469 2.7919 -5.1276 15 1 9.1742 3.4250 -4.2962 16 6 9.9721 3.3484 -6.2746 17 7 10.3046 2.5775 -7.2868 18 14 10.2113 5.1973 -6.3907 19 1 11.1361 5.6452 -5.3187 20 1 10.7864 5.5398 -7.7163 21 1 8.9008 5.8771 -6.2298 22 6 9.5723 0.6718 -2.5965 23 6 9.8772 -0.8037 -2.5638 24 6 10.9022 -1.4091 -3.1901 25 6 10.8100 -2.7873 -2.8884 26 6 9.7293 -2.9428 -2.1026 27 8 9.1683 -1.7379 -1.9094 28 6 3.2682 0.3015 -1.1688 29 1 2.7315 -0.5323 2.0774 30 1 5.1896 -0.5302 2.0717 31 1 6.4209 -0.0011 0.0098 32 1 7.0981 1.3013 -1.4784 33 1 7.0990 -0.4226 -1.9218 34 1 10.2151 0.8011 -5.1529 35 1 8.5740 0.9720 -5.8206 36 1 10.6738 2.9690 -8.0939 37 1 10.5003 1.2322 -2.7090 38 1 9.0829 0.9623 -1.6669 39 1 11.6529 -0.9334 -3.8036 40 1 11.4770 -3.5663 -3.2269 41 1 9.3731 -3.8778 -1.6964 42 1 2.7318 0.5387 -2.0758 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045101791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -8.742860 kcal Electronic energy + Delta-G solvation = -28176.605463 eV Core-core repulsion = 24088.906816 eV Total energy + Delta-G solvation = -4087.698647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.41120 -41.49984 -40.47612 -38.79150 -37.28661 -36.91528 -34.87400 -33.82902 -32.41670 -31.73028 -31.43275 -30.21617 -28.38312 -26.77370 -25.27018 -24.38074 -23.43366 -22.58957 -21.69384 -20.61772 -20.10079 -18.85898 -18.51740 -17.97559 -17.75551 -17.26091 -17.21868 -16.88191 -16.81476 -16.48415 -16.04588 -15.84077 -15.18394 -15.01887 -14.91623 -14.63839 -14.32282 -14.30832 -14.02141 -13.90954 -13.72015 -13.57891 -13.52549 -13.32053 -13.27338 -12.99923 -12.70342 -12.67556 -12.53230 -12.20915 -12.06694 -12.05494 -11.75699 -10.80201 -10.71944 -10.62196 -10.02422 -9.73855 -9.35873 -9.29474 -8.21408 -6.35478 -0.27181 0.40459 0.76609 1.39743 1.42724 1.44649 1.50806 1.58243 1.66778 1.84665 1.89490 2.15240 2.39494 2.60296 2.86663 2.93277 3.10055 3.45086 3.76090 3.84722 3.92392 4.07027 4.11551 4.16537 4.17970 4.21712 4.33753 4.42079 4.51619 4.62839 4.86601 4.94408 4.98841 5.09432 5.18678 5.22003 5.26468 5.34048 5.38748 5.47687 5.62463 5.65452 5.77607 6.04711 6.23399 6.29542 6.36694 6.55536 6.73747 7.21005 7.37629 8.86283 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.003178 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.506865 B = 8807.993381 C =11086.870490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.281 3.719 3 C -0.001 4.001 4 C -0.096 4.096 5 C -0.066 4.066 6 C -0.171 4.171 7 C 0.109 3.891 8 O -0.321 6.321 9 C 0.054 3.946 10 C 0.500 3.500 11 O -0.576 6.576 12 N -0.591 5.591 13 C 0.266 3.734 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.279 1.279 22 C 0.186 3.814 23 C -0.048 4.048 24 C -0.208 4.208 25 C -0.234 4.234 26 C -0.029 4.029 27 O -0.180 6.180 28 C -0.118 4.118 29 H 0.161 0.839 30 H 0.178 0.822 31 H 0.159 0.841 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.030 0.970 35 H -0.006 1.006 36 H 0.266 0.734 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.243 0.757 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -10.670 22.898 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.034 4.034 3 C -0.004 4.004 4 C -0.117 4.117 5 C -0.083 4.083 6 C -0.190 4.190 7 C 0.064 3.936 8 O -0.234 6.234 9 C -0.024 4.024 10 C 0.288 3.712 11 O -0.455 6.455 12 N -0.323 5.323 13 C 0.145 3.855 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.190 4.190 17 N -0.568 5.568 18 Si 0.790 3.210 19 H -0.180 1.180 20 H -0.209 1.209 21 H -0.205 1.205 22 C 0.063 3.937 23 C -0.099 4.099 24 C -0.229 4.229 25 C -0.253 4.253 26 C -0.096 4.096 27 O -0.076 6.076 28 C -0.140 4.140 29 H 0.179 0.821 30 H 0.195 0.805 31 H 0.177 0.823 32 H 0.146 0.854 33 H 0.136 0.864 34 H 0.048 0.952 35 H 0.012 0.988 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.156 0.844 40 H 0.181 0.819 41 H 0.259 0.741 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.381 -10.409 22.189 24.741 hybrid contribution 0.900 0.758 -1.431 1.852 sum -2.482 -9.651 20.758 23.026 Atomic orbital electron populations 1.81273 1.13269 1.10258 1.08786 1.25820 0.92704 0.92448 0.92426 1.15642 0.83193 1.06243 0.95342 1.21445 0.94905 0.98738 0.96563 1.21314 0.93037 0.95500 0.98476 1.21894 1.02293 1.02840 0.92021 1.19005 0.91364 0.97167 0.86083 1.86157 1.19136 1.85152 1.32941 1.22672 0.79277 1.05382 0.95031 1.20822 0.82621 0.77311 0.90488 1.90702 1.60062 1.50191 1.44572 1.48181 1.04614 1.66638 1.12838 1.18774 0.92523 0.94936 0.79244 1.21689 1.42024 0.93042 1.01360 0.91974 1.25829 0.94965 1.03204 0.94985 1.70048 1.43710 1.37404 1.05664 0.85499 0.78460 0.79235 0.77825 1.17956 1.20860 1.20518 1.20202 0.97648 0.85590 0.90225 1.22968 0.94398 0.92378 1.00145 1.21917 1.01660 0.95445 1.03831 1.22142 1.02130 0.96593 1.04385 1.24812 0.95021 0.87924 1.01866 1.83942 1.48433 1.16389 1.58814 1.20340 0.91569 1.03556 0.98505 0.82130 0.80475 0.82311 0.85395 0.86369 0.95163 0.98829 0.92473 0.86114 0.85497 0.84361 0.81911 0.74052 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.94 18.54 19.01 0.35 -11.58 16 2 C 0.28 5.89 15.33 88.33 1.35 7.24 16 3 C 0.00 -0.01 5.73 -21.37 -0.12 -0.13 16 4 C -0.10 -0.98 9.75 22.55 0.22 -0.76 16 5 C -0.07 -0.52 10.02 22.21 0.22 -0.30 16 6 C -0.17 -2.23 9.03 22.42 0.20 -2.03 16 7 C 0.11 2.36 6.68 22.47 0.15 2.51 16 8 O -0.32 -9.64 9.67 -73.52 -0.71 -10.36 16 9 C 0.05 1.41 3.77 71.24 0.27 1.68 16 10 C 0.50 20.15 7.75 87.66 0.68 20.83 16 11 O -0.58 -30.52 16.08 16.00 0.26 -30.26 16 12 N -0.59 -23.20 2.44 -830.51 -2.03 -25.23 16 13 C 0.27 13.69 5.16 85.63 0.44 14.14 16 14 C -0.54 -29.74 9.39 25.60 0.24 -29.50 16 15 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 16 C 0.01 0.52 5.46 84.65 0.46 0.99 16 17 N -0.93 -55.07 13.29 21.45 0.28 -54.78 16 18 Si 0.97 43.54 29.54 68.60 2.03 45.57 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 C 0.19 4.97 5.74 85.63 0.49 5.46 16 23 C -0.05 -1.25 6.85 24.83 0.17 -1.08 16 24 C -0.21 -5.73 10.81 22.19 0.24 -5.49 16 25 C -0.23 -5.09 10.91 22.19 0.24 -4.85 16 26 C -0.03 -0.52 12.09 66.97 0.81 0.29 16 27 O -0.18 -3.91 9.55 -2.49 -0.02 -3.93 16 28 C -0.12 -2.52 9.69 22.64 0.22 -2.30 16 29 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 30 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 31 H 0.16 1.35 6.28 -2.91 -0.02 1.33 16 32 H 0.13 2.31 6.92 -2.39 -0.02 2.29 16 33 H 0.12 2.46 6.44 -2.39 -0.02 2.45 16 34 H 0.03 1.57 8.07 -2.39 -0.02 1.56 16 35 H -0.01 -0.40 7.42 -2.39 -0.02 -0.41 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.12 3.22 8.07 -2.39 -0.02 3.20 16 38 H 0.13 2.22 6.44 -2.39 -0.02 2.20 16 39 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 41 H 0.24 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -82.63 378.68 7.52 -75.11 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.07 Total: 8.78 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.29 Total: 6.69 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -1.39 Total: -91.59 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -0.48 Total: -44.55 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -82.63 7.52 -75.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045101791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.369 kcal (2) G-P(sol) polarization free energy of solvation -82.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds