Wall clock time and date at job start Sat Apr 11 2020 05:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47015 * 300.00255 * 3 2 1 6 6 H 1.48497 * 109.46876 * 60.00373 * 3 2 1 7 7 C 1.38653 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99729 * 174.60322 * 9 7 2 11 11 C 1.38964 * 120.02791 * 173.82089 * 10 9 7 12 12 C 1.38131 * 120.08127 * 179.71687 * 11 10 9 13 13 C 1.38190 * 120.14542 * 0.56072 * 12 11 10 14 14 C 1.38982 * 120.05785 * 359.71705 * 13 12 11 15 15 N 1.39726 * 120.04033 * 180.02562 * 14 13 12 16 16 C 1.34769 * 120.00192 * 326.28075 * 15 14 13 17 17 O 1.21383 * 120.00190 * 354.78289 * 16 15 14 18 18 C 1.49349 * 120.00507 * 174.78131 * 16 15 14 19 19 O 1.21363 * 119.99753 * 0.02562 * 18 16 15 20 20 N 1.34779 * 120.00444 * 179.97438 * 18 16 15 21 21 C 1.46497 * 120.00117 * 180.02562 * 20 18 16 22 22 C 1.50695 * 109.47139 * 180.02562 * 21 20 18 23 23 C 1.38233 * 120.00177 * 269.72154 * 22 21 20 24 24 C 1.38231 * 120.00027 * 179.76572 * 23 22 21 25 25 C 1.38237 * 120.00309 * 0.50930 * 24 23 22 26 26 C 1.38231 * 119.99565 * 359.74995 * 25 24 23 27 27 C 1.38241 * 120.00500 * 359.97438 * 26 25 24 28 28 C 1.38718 * 120.03271 * 354.09280 * 10 9 7 29 29 H 0.97004 * 119.99970 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.95908 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.93113 * 180.27653 * 12 11 10 32 32 H 1.07997 * 119.97207 * 179.74058 * 13 12 11 33 33 H 0.97004 * 119.99804 * 146.27593 * 15 14 13 34 34 H 0.96998 * 119.99490 * 0.02562 * 20 18 16 35 35 H 1.09001 * 109.47033 * 300.00064 * 21 20 18 36 36 H 1.08997 * 109.47281 * 59.99675 * 21 20 18 37 37 H 1.07997 * 119.99917 * 0.02562 * 23 22 21 38 38 H 1.08005 * 120.00245 * 180.23899 * 24 23 22 39 39 H 1.08000 * 120.00079 * 179.72345 * 25 24 23 40 40 H 1.07997 * 120.00285 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.00519 * 179.97438 * 27 26 25 42 42 H 1.07994 * 120.07071 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5043 -0.1148 11 6 1.4552 -4.7449 0.0068 12 6 2.2007 -5.9013 -0.1151 13 6 3.5611 -5.8289 -0.3469 14 6 4.1823 -4.5912 -0.4638 15 7 5.5578 -4.5183 -0.6987 16 6 6.3813 -5.4468 -0.1733 17 8 5.9420 -6.2907 0.5806 18 6 7.8343 -5.4376 -0.5185 19 8 8.2736 -4.5936 -1.2719 20 7 8.6579 -6.3658 0.0074 21 6 10.0832 -6.3563 -0.3309 22 6 10.7763 -7.4887 0.3822 23 6 11.3156 -7.2871 1.6389 24 6 11.9470 -8.3272 2.2950 25 6 12.0484 -9.5660 1.6900 26 6 11.5138 -9.7661 0.4310 27 6 10.8773 -8.7276 -0.2228 28 6 3.4346 -3.4274 -0.3476 29 1 -0.4850 0.8401 0.0004 30 1 0.3930 -4.8050 0.1928 31 1 1.7202 -6.8643 -0.0245 32 1 4.1419 -6.7348 -0.4375 33 1 5.9200 -3.7994 -1.2400 34 1 8.3068 -7.0401 0.6098 35 1 10.2020 -6.4785 -1.4075 36 1 10.5237 -5.4083 -0.0221 37 1 11.2399 -6.3183 2.1099 38 1 12.3650 -8.1708 3.2785 39 1 12.5457 -10.3773 2.2007 40 1 11.5934 -10.7337 -0.0419 41 1 10.4600 -8.8838 -1.2066 42 1 3.9147 -2.4644 -0.4385 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048584747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:34 Heat of formation + Delta-G solvation = -36.464006 kcal Electronic energy + Delta-G solvation = -27061.015089 eV Core-core repulsion = 22972.114363 eV Total energy + Delta-G solvation = -4088.900726 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.97787 -39.86135 -39.17737 -38.36775 -36.56742 -35.55093 -34.25696 -32.26999 -31.83047 -31.36463 -29.57685 -28.76578 -27.17874 -25.40465 -24.43701 -23.04786 -21.95888 -21.85898 -21.45947 -20.18086 -19.00284 -18.03243 -17.50476 -17.05663 -16.78597 -16.24076 -15.79413 -15.55589 -15.51982 -15.23764 -15.05090 -14.54416 -14.29714 -14.02081 -13.91855 -13.82233 -13.58184 -13.42377 -13.05453 -12.99705 -12.88770 -12.42470 -11.93740 -11.76642 -11.62235 -11.56237 -11.50045 -11.10896 -11.02897 -10.78168 -10.44101 -10.01061 -9.67413 -9.58397 -9.51693 -9.37925 -9.25038 -8.84156 -7.83680 -7.23924 -6.47825 -4.07565 0.74019 0.94052 1.17073 2.07375 2.27449 2.37377 3.10381 3.12811 3.17465 3.18212 3.28546 3.67614 3.94459 4.13993 4.36685 4.38020 4.53421 4.55287 4.67580 4.86354 5.01778 5.07431 5.19043 5.21983 5.22159 5.50175 5.57943 5.61421 5.85069 5.89902 5.95785 5.97255 6.05474 6.09614 6.13027 6.17517 6.50380 6.52469 6.69124 6.85756 6.94934 7.07527 7.22042 7.35808 7.43177 7.63960 7.70939 7.95345 8.00458 8.97697 9.66288 10.69959 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002013 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.234056 B =13909.459423 C =14905.400870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.174 6.174 10 C 0.168 3.832 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.204 4.204 14 C 0.173 3.827 15 N -0.635 5.635 16 C 0.504 3.496 17 O -0.501 6.501 18 C 0.511 3.489 19 O -0.517 6.517 20 N -0.698 5.698 21 C 0.160 3.840 22 C -0.112 4.112 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.098 4.098 28 C -0.250 4.250 29 H 0.270 0.730 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.419 0.581 34 H 0.415 0.585 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.766 -16.340 0.775 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.214 4.214 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.081 3.919 15 N -0.281 5.281 16 C 0.285 3.715 17 O -0.375 6.375 18 C 0.292 3.708 19 O -0.392 6.392 20 N -0.352 5.352 21 C 0.037 3.963 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.117 4.117 28 C -0.271 4.271 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.256 0.744 34 H 0.252 0.748 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.386 -16.105 0.769 27.588 hybrid contribution 0.625 0.872 0.027 1.073 sum 23.011 -15.233 0.797 27.607 Atomic orbital electron populations 1.70042 1.05943 1.27625 1.45894 1.25286 0.95848 0.98835 0.96474 0.85657 0.79161 0.80389 0.78293 1.19092 1.20100 1.20113 1.21338 0.91742 0.80803 1.52989 0.89105 1.84024 1.33915 1.11395 1.78363 1.19076 0.89416 0.88201 0.92001 1.20293 1.00242 0.89954 1.10935 1.20521 0.92963 0.97052 0.97632 1.20523 0.94807 0.95593 1.11572 1.17394 0.80393 0.94311 0.99847 1.43138 1.05872 1.28738 1.50351 1.20017 0.86944 0.82934 0.81630 1.90794 1.76802 1.36604 1.33287 1.20133 0.87256 0.82077 0.81341 1.90786 1.77109 1.36629 1.34685 1.45807 1.08222 1.32377 1.48822 1.20311 0.79050 0.97105 0.99808 1.19829 1.00832 0.94959 0.95654 1.21156 0.96966 0.99492 0.94023 1.21202 0.99511 0.93160 1.00132 1.21264 0.98993 0.97319 0.95340 1.21195 0.98389 0.99105 0.95347 1.21148 0.98174 0.92295 1.00049 1.20843 0.94798 0.97238 1.14254 0.92012 0.86192 0.86404 0.86330 0.74389 0.74838 0.89907 0.89886 0.85633 0.85720 0.85874 0.85737 0.85659 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -10.82 9.44 30.89 0.29 -10.52 16 8 H 0.09 2.32 5.30 -52.49 -0.28 2.04 16 9 O -0.17 -4.88 9.76 0.03 0.00 -4.88 16 10 C 0.17 4.00 6.64 -39.14 -0.26 3.74 16 11 C -0.19 -4.07 9.99 -39.35 -0.39 -4.46 16 12 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 13 C -0.20 -3.80 8.65 -39.32 -0.34 -4.14 16 14 C 0.17 3.30 6.27 -83.77 -0.52 2.77 16 15 N -0.64 -10.15 5.32 -10.31 -0.05 -10.21 16 16 C 0.50 7.58 7.62 -11.64 -0.09 7.49 16 17 O -0.50 -8.39 14.18 5.47 0.08 -8.31 16 18 C 0.51 6.55 7.89 -11.63 -0.09 6.46 16 19 O -0.52 -7.53 16.48 5.49 0.09 -7.44 16 20 N -0.70 -6.89 5.54 -61.95 -0.34 -7.23 16 21 C 0.16 1.28 5.80 -5.20 -0.03 1.25 16 22 C -0.11 -0.81 5.25 -104.63 -0.55 -1.36 16 23 C -0.10 -0.67 9.70 -39.59 -0.38 -1.06 16 24 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 25 C -0.11 -0.66 10.05 -39.58 -0.40 -1.06 16 26 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 27 C -0.10 -0.66 9.70 -39.58 -0.38 -1.04 16 28 C -0.25 -5.38 9.05 -39.19 -0.35 -5.74 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.12 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.12 2.09 6.44 -52.49 -0.34 1.75 16 33 H 0.42 5.98 8.30 -40.82 -0.34 5.65 16 34 H 0.42 3.87 7.93 -40.82 -0.32 3.54 16 35 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 36 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 39 H 0.12 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.12 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.13 2.82 5.71 -52.49 -0.30 2.52 16 LS Contribution 372.04 15.07 5.61 5.61 Total: -1.00 -32.66 372.04 -8.20 -40.86 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -4.51 Total: 10.96 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -4.80 Total: -10.52 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.36 Total: -41.64 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.66 -8.20 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048584747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.396 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds