Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47015 * 300.00255 * 3 2 1 6 6 H 1.48497 * 109.46876 * 60.00373 * 3 2 1 7 7 C 1.38653 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00093 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99812 * 359.97438 * 7 2 1 10 10 C 1.35753 * 116.99729 * 174.60322 * 9 7 2 11 11 C 1.38964 * 120.02791 * 173.82089 * 10 9 7 12 12 C 1.38131 * 120.08127 * 179.71687 * 11 10 9 13 13 C 1.38190 * 120.14542 * 0.56072 * 12 11 10 14 14 C 1.38982 * 120.05785 * 359.71705 * 13 12 11 15 15 N 1.39726 * 120.04033 * 180.02562 * 14 13 12 16 16 C 1.34769 * 120.00192 * 326.28075 * 15 14 13 17 17 O 1.21383 * 120.00190 * 354.78289 * 16 15 14 18 18 C 1.49349 * 120.00507 * 174.78131 * 16 15 14 19 19 O 1.21363 * 119.99753 * 0.02562 * 18 16 15 20 20 N 1.34779 * 120.00444 * 179.97438 * 18 16 15 21 21 C 1.46497 * 120.00117 * 180.02562 * 20 18 16 22 22 C 1.50695 * 109.47139 * 180.02562 * 21 20 18 23 23 C 1.38233 * 120.00177 * 269.72154 * 22 21 20 24 24 C 1.38231 * 120.00027 * 179.76572 * 23 22 21 25 25 C 1.38237 * 120.00309 * 0.50930 * 24 23 22 26 26 C 1.38231 * 119.99565 * 359.74995 * 25 24 23 27 27 C 1.38241 * 120.00500 * 359.97438 * 26 25 24 28 28 C 1.38718 * 120.03271 * 354.09280 * 10 9 7 29 29 H 0.97004 * 119.99970 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.95908 * 359.97438 * 11 10 9 31 31 H 1.07995 * 119.93113 * 180.27653 * 12 11 10 32 32 H 1.07997 * 119.97207 * 179.74058 * 13 12 11 33 33 H 0.97004 * 119.99804 * 146.27593 * 15 14 13 34 34 H 0.96998 * 119.99490 * 0.02562 * 20 18 16 35 35 H 1.09001 * 109.47033 * 300.00064 * 21 20 18 36 36 H 1.08997 * 109.47281 * 59.99675 * 21 20 18 37 37 H 1.07997 * 119.99917 * 0.02562 * 23 22 21 38 38 H 1.08005 * 120.00245 * 180.23899 * 24 23 22 39 39 H 1.08000 * 120.00079 * 179.72345 * 25 24 23 40 40 H 1.07997 * 120.00285 * 179.97438 * 26 25 24 41 41 H 1.07997 * 120.00519 * 179.97438 * 27 26 25 42 42 H 1.07994 * 120.07071 * 359.97438 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8908 2.3964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0693 -3.5043 -0.1148 11 6 1.4552 -4.7449 0.0068 12 6 2.2007 -5.9013 -0.1151 13 6 3.5611 -5.8289 -0.3469 14 6 4.1823 -4.5912 -0.4638 15 7 5.5578 -4.5183 -0.6987 16 6 6.3813 -5.4468 -0.1733 17 8 5.9420 -6.2907 0.5806 18 6 7.8343 -5.4376 -0.5185 19 8 8.2736 -4.5936 -1.2719 20 7 8.6579 -6.3658 0.0074 21 6 10.0832 -6.3563 -0.3309 22 6 10.7763 -7.4887 0.3822 23 6 11.3156 -7.2871 1.6389 24 6 11.9470 -8.3272 2.2950 25 6 12.0484 -9.5660 1.6900 26 6 11.5138 -9.7661 0.4310 27 6 10.8773 -8.7276 -0.2228 28 6 3.4346 -3.4274 -0.3476 29 1 -0.4850 0.8401 0.0004 30 1 0.3930 -4.8050 0.1928 31 1 1.7202 -6.8643 -0.0245 32 1 4.1419 -6.7348 -0.4375 33 1 5.9200 -3.7994 -1.2400 34 1 8.3068 -7.0401 0.6098 35 1 10.2020 -6.4785 -1.4075 36 1 10.5237 -5.4083 -0.0221 37 1 11.2399 -6.3183 2.1099 38 1 12.3650 -8.1708 3.2785 39 1 12.5457 -10.3773 2.2007 40 1 11.5934 -10.7337 -0.0419 41 1 10.4600 -8.8838 -1.2066 42 1 3.9147 -2.4644 -0.4385 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048584747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -57.893147 kcal Electronic energy + Delta-G solvation = -27061.944326 eV Core-core repulsion = 22972.114363 eV Total energy + Delta-G solvation = -4089.829963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.17864 -40.90912 -40.26250 -39.64816 -38.18860 -36.51719 -35.57523 -34.24412 -32.47118 -31.81467 -31.15190 -30.40627 -28.03187 -27.31081 -25.55421 -23.56697 -23.50501 -23.03229 -22.25235 -21.46882 -20.26471 -19.69918 -19.05615 -17.94597 -17.70766 -17.30273 -17.02454 -16.78910 -16.64799 -16.31450 -16.02364 -15.94826 -15.76082 -15.53248 -15.16357 -15.08227 -14.59888 -14.31774 -14.21042 -13.93726 -13.67665 -13.57207 -13.51023 -13.36217 -13.10368 -12.76716 -12.56188 -12.40646 -12.10030 -12.04073 -11.94249 -11.53699 -11.34795 -10.89914 -10.73725 -10.43342 -9.84648 -9.80737 -9.43815 -8.95048 -8.47796 -6.16298 -0.07291 0.21966 0.47770 0.58489 0.70271 1.22607 1.35916 1.43573 1.53438 1.99046 2.16817 2.46374 2.80497 2.90978 3.14030 3.28995 3.46836 3.58043 3.89849 4.07967 4.13095 4.28073 4.28645 4.33175 4.38877 4.53414 4.57198 4.59026 4.61778 4.74880 4.98802 4.99185 5.03986 5.09584 5.13924 5.25045 5.30979 5.51883 5.60066 5.60218 5.61044 5.63807 5.82646 6.00229 6.06127 6.11138 6.22190 6.57094 6.76628 6.96886 7.75137 8.75032 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002013 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.234056 B =13909.459423 C =14905.400870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.020 4.020 3 Si 1.016 2.984 4 H -0.253 1.253 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.224 6.224 10 C 0.134 3.866 11 C -0.205 4.205 12 C -0.048 4.048 13 C -0.194 4.194 14 C 0.178 3.822 15 N -0.635 5.635 16 C 0.507 3.493 17 O -0.515 6.515 18 C 0.520 3.480 19 O -0.535 6.535 20 N -0.681 5.681 21 C 0.161 3.839 22 C -0.121 4.121 23 C -0.109 4.109 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.107 4.107 28 C -0.256 4.256 29 H 0.273 0.727 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.427 0.573 34 H 0.419 0.581 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.134 0.866 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.504 -18.225 0.905 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.218 4.218 3 Si 0.836 3.164 4 H -0.176 1.176 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.130 6.130 10 C 0.083 3.917 11 C -0.225 4.225 12 C -0.067 4.067 13 C -0.214 4.214 14 C 0.084 3.916 15 N -0.281 5.281 16 C 0.290 3.710 17 O -0.390 6.390 18 C 0.299 3.701 19 O -0.413 6.413 20 N -0.334 5.334 21 C 0.039 3.961 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.125 4.125 28 C -0.278 4.278 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.178 0.822 32 H 0.155 0.845 33 H 0.265 0.735 34 H 0.257 0.743 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 25.186 -18.061 0.904 31.006 hybrid contribution -0.053 1.082 0.012 1.083 sum 25.133 -16.979 0.916 30.345 Atomic orbital electron populations 1.70177 1.07919 1.28775 1.48552 1.26536 0.96834 1.02612 0.95826 0.84564 0.78250 0.75054 0.78579 1.17593 1.19276 1.19416 1.21798 0.92402 0.81377 1.53262 0.88213 1.83987 1.35443 1.12462 1.81079 1.19609 0.90566 0.88199 0.93355 1.20559 1.00894 0.89889 1.11150 1.20957 0.92722 0.97781 0.95209 1.20893 0.95158 0.95903 1.09492 1.17428 0.81789 0.93702 0.98676 1.43120 1.04796 1.29536 1.50664 1.20415 0.87842 0.82008 0.80769 1.90780 1.77379 1.37070 1.33819 1.19644 0.86240 0.82611 0.81574 1.90793 1.76989 1.37637 1.35851 1.45827 1.08763 1.31157 1.47610 1.20421 0.77639 0.97739 1.00264 1.19769 1.01516 0.94903 0.95964 1.21325 0.97206 1.00094 0.94099 1.21464 0.99369 0.93172 1.00871 1.21579 0.98596 0.97791 0.95393 1.21473 0.98016 0.99738 0.95541 1.21334 0.98343 0.92301 1.00546 1.20848 0.94263 0.98079 1.14565 0.91778 0.85856 0.82178 0.84506 0.73456 0.74319 0.89420 0.89684 0.85129 0.84232 0.84000 0.84054 0.84846 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.57 13.67 21.61 0.30 -55.27 16 2 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 3 Si 1.02 42.59 29.55 68.60 2.03 44.62 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.41 -23.67 9.44 67.92 0.64 -23.03 16 8 H 0.10 5.28 5.30 -2.91 -0.02 5.26 16 9 O -0.22 -13.22 9.76 -22.83 -0.22 -13.44 16 10 C 0.13 6.59 6.64 22.56 0.15 6.74 16 11 C -0.21 -8.57 9.99 22.42 0.22 -8.35 16 12 C -0.05 -1.64 10.03 22.23 0.22 -1.42 16 13 C -0.19 -6.72 8.65 22.44 0.19 -6.52 16 14 C 0.18 6.56 6.27 38.20 0.24 6.80 16 15 N -0.63 -19.39 5.32 -304.89 -1.62 -21.01 16 16 C 0.51 14.29 7.62 87.24 0.66 14.95 16 17 O -0.52 -16.05 14.18 -3.35 -0.05 -16.10 16 18 C 0.52 12.36 7.89 87.24 0.69 13.04 16 19 O -0.54 -14.75 16.48 -3.29 -0.05 -14.80 16 20 N -0.68 -12.07 5.54 -468.25 -2.59 -14.67 16 21 C 0.16 2.29 5.80 85.63 0.50 2.79 16 22 C -0.12 -1.54 5.25 -19.87 -0.10 -1.64 16 23 C -0.11 -1.32 9.70 22.27 0.22 -1.10 16 24 C -0.13 -1.38 10.05 22.27 0.22 -1.15 16 25 C -0.12 -1.11 10.05 22.27 0.22 -0.88 16 26 C -0.13 -1.30 10.05 22.27 0.22 -1.07 16 27 C -0.11 -1.23 9.70 22.27 0.22 -1.01 16 28 C -0.26 -11.17 9.05 22.52 0.20 -10.96 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.16 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.14 4.33 6.44 -2.91 -0.02 4.31 16 33 H 0.43 11.75 8.30 -92.71 -0.77 10.98 16 34 H 0.42 6.91 7.93 -92.71 -0.74 6.17 16 35 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 36 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.13 1.36 8.06 -2.91 -0.02 1.33 16 38 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.14 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.14 0.86 8.06 -2.91 -0.02 0.83 16 41 H 0.13 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.13 5.56 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -72.96 372.04 2.56 -70.40 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.41 Total: 33.74 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 5.19 Total: -13.46 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.92 Total: -90.95 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.32 Total: -44.34 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.96 2.56 -70.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048584747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.504 kcal (2) G-P(sol) polarization free energy of solvation -72.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds