Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48507 * 109.47300 * 269.99619 * 3 2 1 5 5 H 1.48502 * 109.47338 * 29.99824 * 3 2 1 6 6 H 1.48507 * 109.47285 * 149.99959 * 3 2 1 7 7 C 1.38655 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99924 * 359.97438 * 7 2 1 9 9 O 1.34805 * 120.00023 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99984 * 174.96178 * 9 7 2 11 11 C 1.38937 * 119.99150 * 185.07037 * 10 9 7 12 12 C 1.37972 * 120.00636 * 179.72485 * 11 10 9 13 13 C 1.38992 * 119.99111 * 0.55116 * 12 11 10 14 14 N 1.39748 * 120.00869 * 179.70459 * 13 12 11 15 15 C 1.34778 * 119.99801 * 215.16485 * 14 13 12 16 16 O 1.21390 * 120.00204 * 355.49247 * 15 14 13 17 17 C 1.49325 * 119.99639 * 175.49598 * 15 14 13 18 18 O 1.21359 * 119.99754 * 359.97438 * 17 15 14 19 19 N 1.34776 * 119.99641 * 179.97438 * 17 15 14 20 20 C 1.46500 * 119.99960 * 179.97438 * 19 17 15 21 21 C 1.50695 * 109.47147 * 180.02562 * 20 19 17 22 22 C 1.38240 * 120.00018 * 269.72439 * 21 20 19 23 23 C 1.38226 * 119.99894 * 179.76869 * 22 21 20 24 24 C 1.38231 * 120.00162 * 0.50772 * 23 22 21 25 25 C 1.38239 * 120.00218 * 359.74624 * 24 23 22 26 26 C 1.38238 * 119.99762 * 90.00438 * 21 20 19 27 27 C 1.39003 * 119.98745 * 359.72155 * 13 12 11 28 28 C 1.37963 * 119.99187 * 0.02562 * 27 13 12 29 29 H 0.96998 * 120.00042 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99675 * 359.97438 * 11 10 9 31 31 H 1.08001 * 120.00615 * 180.27027 * 12 11 10 32 32 H 0.96997 * 119.99612 * 35.15460 * 14 13 12 33 33 H 0.97004 * 120.00143 * 0.02562 * 19 17 15 34 34 H 1.09006 * 109.47021 * 300.00523 * 20 19 17 35 35 H 1.08995 * 109.46763 * 59.99800 * 20 19 17 36 36 H 1.08005 * 119.99596 * 0.02562 * 22 21 20 37 37 H 1.08003 * 120.00115 * 180.23456 * 23 22 21 38 38 H 1.08011 * 120.00066 * 179.72470 * 24 23 22 39 39 H 1.08000 * 120.00311 * 179.97438 * 25 24 23 40 40 H 1.07991 * 120.00692 * 359.97438 * 26 21 20 41 41 H 1.08001 * 120.00256 * 179.97438 * 27 13 12 42 42 H 1.07995 * 119.99820 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1360 0.0014 9 8 3.3569 -1.2008 0.0011 10 6 3.9731 -2.4057 0.1078 11 6 5.3563 -2.4707 0.2208 12 6 5.9825 -3.6948 0.3350 13 6 5.2303 -4.8636 0.3255 14 7 5.8647 -6.1040 0.4349 15 6 5.3799 -7.1700 -0.2323 16 8 4.3469 -7.0733 -0.8623 17 6 6.1137 -8.4700 -0.1964 18 8 7.1467 -8.5665 0.4332 19 7 5.6287 -9.5361 -0.8631 20 6 6.3488 -10.8114 -0.8284 21 6 5.6024 -11.8322 -1.6481 22 6 4.6425 -12.6290 -1.0525 23 6 3.9545 -13.5620 -1.8054 24 6 4.2338 -13.7056 -3.1516 25 6 5.1975 -12.9125 -3.7461 26 6 5.8819 -11.9759 -2.9943 27 6 3.8469 -4.7985 0.2067 28 6 3.2209 -3.5738 0.0977 29 1 -0.4850 0.8400 -0.0004 30 1 5.9411 -1.5628 0.2234 31 1 7.0574 -3.7452 0.4273 32 1 6.6539 -6.1976 0.9909 33 1 4.8032 -9.4588 -1.3667 34 1 7.3487 -10.6755 -1.2407 35 1 6.4248 -11.1577 0.2023 36 1 4.4271 -12.5195 0.0002 37 1 3.2018 -14.1818 -1.3410 38 1 3.6994 -14.4378 -3.7389 39 1 5.4160 -13.0251 -4.7977 40 1 6.6347 -11.3563 -3.4587 41 1 3.2622 -5.7065 0.1988 42 1 2.1462 -3.5232 0.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048584815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -33.181952 kcal Electronic energy + Delta-G solvation = -26877.546048 eV Core-core repulsion = 22788.787642 eV Total energy + Delta-G solvation = -4088.758405 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.97073 -39.86627 -39.25503 -38.48078 -36.76568 -35.54685 -34.04812 -32.36823 -31.82986 -31.35919 -30.37014 -28.66356 -27.11639 -25.38208 -24.08966 -23.04306 -22.49518 -21.75858 -21.23486 -20.24862 -19.02248 -17.88565 -17.53844 -17.15923 -17.04262 -16.34832 -16.18414 -15.79382 -15.52658 -15.26023 -14.76979 -14.31504 -14.14263 -13.96868 -13.86860 -13.84084 -13.77293 -13.42147 -13.00270 -12.92841 -12.82758 -12.49325 -12.32480 -11.95799 -11.76231 -11.58280 -11.50261 -11.49556 -10.99651 -10.77371 -10.27440 -9.85542 -9.73167 -9.59565 -9.37317 -9.35015 -9.22706 -8.82061 -8.35770 -7.15598 -6.44898 -4.10624 0.74584 0.94747 1.19567 2.02962 2.09143 2.34792 3.14449 3.21806 3.23922 3.29403 3.37977 3.68082 4.13725 4.20802 4.34766 4.38132 4.45857 4.55894 4.68315 4.79192 4.85777 5.02284 5.07087 5.17374 5.22262 5.50218 5.50427 5.57427 5.58374 5.84084 5.95731 5.97906 6.01936 6.06361 6.09626 6.13037 6.47764 6.51210 6.64154 6.75430 6.90543 6.98135 7.22790 7.34515 7.52230 7.62701 7.75035 7.96141 8.04046 8.89610 9.50562 10.62357 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020171 B = 0.001846 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.809966 B =15161.778985 C =16096.643403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.155 3.845 11 C -0.177 4.177 12 C -0.087 4.087 13 C 0.032 3.968 14 N -0.626 5.626 15 C 0.497 3.503 16 O -0.506 6.506 17 C 0.513 3.487 18 O -0.522 6.522 19 N -0.698 5.698 20 C 0.160 3.840 21 C -0.113 4.113 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.098 4.098 27 C -0.063 4.063 28 C -0.208 4.208 29 H 0.280 0.720 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.415 0.585 33 H 0.416 0.584 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.161 -25.174 -3.144 28.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.102 3.898 11 C -0.197 4.197 12 C -0.107 4.107 13 C -0.061 4.061 14 N -0.271 5.271 15 C 0.278 3.722 16 O -0.381 6.381 17 C 0.293 3.707 18 O -0.398 6.398 19 N -0.352 5.352 20 C 0.038 3.962 21 C -0.113 4.113 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.129 4.129 25 C -0.140 4.140 26 C -0.117 4.117 27 C -0.082 4.082 28 C -0.228 4.228 29 H 0.090 0.910 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.251 0.749 33 H 0.252 0.748 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.062 -24.823 -3.164 27.779 hybrid contribution 0.085 0.545 -0.060 0.555 sum 12.147 -24.278 -3.224 27.338 Atomic orbital electron populations 1.69647 1.05590 1.28589 1.47530 1.24489 0.95052 0.98899 0.95599 0.86166 0.80319 0.81340 0.78993 1.19847 1.20783 1.18294 1.20793 0.76811 0.96730 1.52155 0.87480 1.83557 1.22713 1.25681 1.79797 1.19186 0.91703 0.85574 0.93292 1.19995 0.91904 0.97329 1.10479 1.20388 0.98377 0.90591 1.01370 1.17301 0.91822 0.83071 1.13869 1.42845 1.31076 1.07329 1.45870 1.20008 0.86069 0.85194 0.80940 1.90795 1.22422 1.83604 1.41289 1.20164 0.85331 0.85142 0.80040 1.90764 1.23249 1.84357 1.41394 1.45832 1.28363 1.09654 1.51360 1.20303 0.94974 0.80720 1.00229 1.19824 0.98702 0.98315 0.94500 1.21145 0.95074 0.95216 1.00215 1.21198 0.99839 0.98641 0.94320 1.21271 0.97431 0.99048 0.95131 1.21202 0.96565 0.96127 1.00111 1.21145 0.99436 0.97878 0.93199 1.20903 0.92234 0.97977 0.97119 1.21214 1.01381 0.91190 1.09018 0.90968 0.85839 0.86229 0.74883 0.74769 0.89964 0.89934 0.85658 0.85714 0.85857 0.85722 0.85673 0.85396 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.09 13.96 55.48 0.77 -24.32 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.38 28.62 -169.99 -4.86 16.51 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -10.85 9.94 30.89 0.31 -10.54 16 8 H 0.11 3.06 5.43 -52.49 -0.28 2.77 16 9 O -0.21 -5.52 8.58 0.12 0.00 -5.51 16 10 C 0.16 3.52 6.65 -39.06 -0.26 3.26 16 11 C -0.18 -3.37 9.98 -39.42 -0.39 -3.76 16 12 C -0.09 -1.42 9.96 -39.40 -0.39 -1.82 16 13 C 0.03 0.54 6.30 -83.69 -0.53 0.01 16 14 N -0.63 -8.79 5.32 -10.26 -0.05 -8.84 16 15 C 0.50 7.06 7.73 -11.64 -0.09 6.97 16 16 O -0.51 -8.42 13.91 5.46 0.08 -8.35 16 17 C 0.51 6.18 7.88 -11.64 -0.09 6.09 16 18 O -0.52 -7.02 16.48 5.49 0.09 -6.93 16 19 N -0.70 -6.68 5.54 -61.95 -0.34 -7.02 16 20 C 0.16 1.23 5.80 -5.20 -0.03 1.20 16 21 C -0.11 -0.80 5.25 -104.62 -0.55 -1.35 16 22 C -0.10 -0.66 9.70 -39.59 -0.38 -1.05 16 23 C -0.12 -0.76 10.05 -39.59 -0.40 -1.16 16 24 C -0.11 -0.67 10.05 -39.58 -0.40 -1.07 16 25 C -0.12 -0.77 10.05 -39.58 -0.40 -1.16 16 26 C -0.10 -0.67 9.70 -39.58 -0.38 -1.05 16 27 C -0.06 -1.21 8.69 -39.40 -0.34 -1.55 16 28 C -0.21 -4.54 9.16 -39.42 -0.36 -4.90 16 29 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 31 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.41 4.83 8.30 -40.82 -0.34 4.49 16 33 H 0.42 3.88 7.93 -40.82 -0.32 3.55 16 34 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.12 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.12 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.13 2.42 6.22 -52.49 -0.33 2.09 16 42 H 0.14 3.16 5.63 -52.49 -0.30 2.86 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -31.71 370.50 -8.03 -39.73 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.50 Total: 9.35 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -4.79 Total: -10.22 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.38 Total: -40.18 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.86 Total: 16.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.71 -8.03 -39.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048584815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.552 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds