Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86795 * 119.99591 * 2 1 4 4 H 1.48502 * 109.47029 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.47667 * 29.99885 * 3 2 1 6 6 H 1.48508 * 109.47023 * 150.00133 * 3 2 1 7 7 C 1.39937 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99539 * 169.00820 * 7 2 1 9 9 C 1.41431 * 120.00176 * 349.01392 * 7 2 1 10 10 C 1.40787 * 120.17583 * 151.55162 * 9 7 2 11 11 C 1.37718 * 120.04153 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41111 * 359.78364 * 11 10 9 13 13 C 1.39882 * 120.35771 * 0.47369 * 12 11 10 14 14 C 1.47860 * 120.02592 * 179.78742 * 13 12 11 15 15 O 1.21562 * 119.99945 * 179.97438 * 14 13 12 16 16 N 1.34770 * 119.99894 * 359.71904 * 14 13 12 17 17 C 1.40041 * 120.00170 * 174.94237 * 16 14 13 18 18 C 1.38868 * 120.00937 * 326.19747 * 17 16 14 19 19 C 1.38085 * 119.97742 * 179.79371 * 18 17 16 20 20 C 1.38720 * 120.01770 * 0.45932 * 19 18 17 21 21 O 1.35974 * 119.98509 * 179.77088 * 20 19 18 22 22 C 1.42898 * 116.99734 * 0.02562 * 21 20 19 23 23 C 1.50703 * 109.47079 * 180.02562 * 22 21 20 24 24 N 1.34783 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.21280 * 119.99960 * 0.02562 * 23 22 21 26 26 C 1.38727 * 120.03437 * 359.79113 * 20 19 18 27 27 C 1.38079 * 120.01797 * 359.97438 * 26 20 19 28 28 C 1.39048 * 119.94946 * 359.50339 * 13 12 11 29 29 H 0.96990 * 120.00308 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.98269 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.79013 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.81828 * 180.23173 * 12 11 10 33 33 H 0.96996 * 120.00184 * 354.93683 * 16 14 13 34 34 H 1.08001 * 120.01103 * 0.02562 * 18 17 16 35 35 H 1.07995 * 119.99031 * 180.23039 * 19 18 17 36 36 H 1.09001 * 109.47593 * 300.00105 * 22 21 20 37 37 H 1.09000 * 109.47387 * 60.00151 * 22 21 20 38 38 H 0.96994 * 119.99925 * 0.02562 * 24 23 22 39 39 H 0.96995 * 119.99396 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.98978 * 179.97438 * 26 20 19 41 41 H 1.07993 * 120.01361 * 179.97438 * 27 26 20 42 42 H 1.07998 * 120.20760 * 180.23548 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0732 -1.2205 -0.1778 9 6 1.3203 -2.4254 0.2345 10 6 1.7988 -3.6281 -0.3193 11 6 1.1273 -4.8083 -0.0893 12 6 -0.0168 -4.8230 0.6889 13 6 -0.5102 -3.6371 1.2430 14 6 -1.7359 -3.6606 2.0696 15 8 -2.1640 -2.6299 2.5513 16 7 -2.3815 -4.8239 2.2846 17 6 -3.4799 -4.8652 3.1523 18 6 -3.5151 -4.0392 4.2681 19 6 -4.6006 -4.0774 5.1208 20 6 -5.6512 -4.9474 4.8683 21 8 -6.7175 -4.9878 5.7110 22 6 -6.6893 -4.1066 6.8356 23 6 -7.9440 -4.2910 7.6499 24 7 -8.1368 -3.5599 8.7656 25 8 -8.7797 -5.0979 7.3017 26 6 -5.6143 -5.7765 3.7567 27 6 -4.5319 -5.7361 2.9004 28 6 0.1563 -2.4372 1.0209 29 1 -0.4850 0.8399 -0.0004 30 1 2.6934 -3.6254 -0.9242 31 1 1.4981 -5.7286 -0.5158 32 1 -0.5337 -5.7545 0.8662 33 1 -2.0853 -5.6326 1.8384 34 1 -2.6956 -3.3645 4.4667 35 1 -4.6298 -3.4325 5.9865 36 1 -5.8197 -4.3326 7.4527 37 1 -6.6298 -3.0753 6.4878 38 1 -7.4682 -2.9148 9.0443 39 1 -8.9442 -3.6789 9.2898 40 1 -6.4325 -6.4539 3.5610 41 1 -4.5030 -6.3818 2.0353 42 1 -0.2188 -1.5198 1.4498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049650872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -61.353804 kcal Electronic energy + Delta-G solvation = -27233.387392 eV Core-core repulsion = 23143.407364 eV Total energy + Delta-G solvation = -4089.980029 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66285 -39.95057 -39.04569 -37.55856 -36.73372 -34.18342 -34.15870 -33.65954 -31.14334 -30.52278 -29.54370 -29.31348 -27.74255 -25.37988 -23.55020 -23.06996 -21.66739 -21.11367 -20.88270 -19.61694 -18.56247 -18.21832 -17.76928 -17.22916 -16.70919 -16.62165 -16.09297 -15.63511 -15.19215 -14.75459 -14.59976 -14.54468 -14.34653 -14.04191 -13.99666 -13.41427 -13.19630 -13.11273 -12.77295 -12.69686 -12.59941 -12.39151 -11.73857 -11.51018 -11.20688 -11.14026 -11.03769 -10.81814 -10.55719 -10.35551 -10.20101 -10.10368 -9.78935 -9.73595 -9.31965 -9.20634 -8.95451 -7.81518 -7.56486 -7.54455 -6.80562 -4.49803 1.28970 1.39953 2.10751 2.13912 2.40135 2.74672 3.04531 3.06593 3.10136 3.43296 3.56127 3.59006 3.87910 3.93488 4.32086 4.58810 4.59405 4.66664 4.81164 4.89724 5.26128 5.34558 5.42294 5.50551 5.64823 5.89538 5.97080 6.04102 6.17314 6.26147 6.34984 6.42561 6.50520 6.63660 6.74453 6.86867 6.92285 6.98233 7.15163 7.28731 7.30898 7.59033 7.63711 7.76341 7.81175 7.94089 8.09886 8.42879 8.69752 8.74853 8.77161 10.13286 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.002142 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.947730 B =13070.728655 C =14527.543494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.070 3.930 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.099 4.099 12 C -0.213 4.213 13 C -0.133 4.133 14 C 0.565 3.435 15 O -0.526 6.526 16 N -0.678 5.678 17 C 0.131 3.869 18 C -0.083 4.083 19 C -0.187 4.187 20 C 0.098 3.902 21 O -0.293 6.293 22 C 0.039 3.961 23 C 0.521 3.479 24 N -0.852 5.852 25 O -0.520 6.520 26 C -0.125 4.125 27 C -0.113 4.113 28 C -0.083 4.083 29 H 0.284 0.716 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.404 0.596 39 H 0.408 0.592 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -6.126 13.044 17.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.118 4.118 12 C -0.233 4.233 13 C -0.136 4.136 14 C 0.357 3.643 15 O -0.403 6.403 16 N -0.324 5.324 17 C 0.036 3.964 18 C -0.104 4.104 19 C -0.206 4.206 20 C 0.053 3.947 21 O -0.206 6.206 22 C -0.040 4.040 23 C 0.304 3.696 24 N -0.418 5.418 25 O -0.394 6.394 26 C -0.144 4.144 27 C -0.133 4.133 28 C -0.103 4.103 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.239 0.761 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.804 -5.891 12.936 17.854 hybrid contribution 0.621 0.844 0.108 1.053 sum -10.183 -5.047 13.044 17.301 Atomic orbital electron populations 1.69746 1.07424 1.29670 1.34809 1.25960 0.94893 1.01517 0.92409 0.86224 0.80393 0.80392 0.79234 1.19431 1.20007 1.18456 1.19579 0.96092 0.90270 1.42919 0.90101 1.17622 0.91465 0.92584 0.88880 1.21187 1.02663 0.93309 1.05260 1.20454 0.95722 0.96802 0.98784 1.20371 1.00522 0.95071 1.07375 1.19390 0.95509 0.95846 1.02847 1.19002 0.83716 0.81951 0.79614 1.90710 1.66609 1.32336 1.50619 1.43644 1.30126 1.12649 1.46012 1.17755 0.88837 0.98740 0.91035 1.21025 0.98784 0.98846 0.91706 1.21064 0.95170 1.01949 1.02409 1.18904 0.87048 0.97056 0.91688 1.86122 1.40353 1.59163 1.34970 1.22395 0.97104 0.95886 0.88596 1.20128 0.87676 0.80656 0.81142 1.43662 1.26468 1.43910 1.27806 1.90806 1.45036 1.34495 1.69018 1.20127 0.99563 1.01007 0.93710 1.20729 0.91877 1.00916 0.99822 1.21713 0.95903 0.95821 0.96907 0.90468 0.88430 0.88690 0.89107 0.75286 0.84218 0.85447 0.88839 0.88759 0.76780 0.76051 0.84843 0.84904 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 10.83 55.55 0.60 -19.95 16 2 C 0.07 1.74 5.25 -17.34 -0.09 1.65 16 3 Si 0.91 18.40 29.57 -169.99 -5.03 13.37 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.74 9.06 -37.73 -0.34 -12.08 16 8 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 9 C 0.10 2.48 5.55 -106.87 -0.59 1.89 16 10 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 11 C -0.10 -2.02 10.01 -39.72 -0.40 -2.42 16 12 C -0.21 -4.26 9.54 -38.92 -0.37 -4.63 16 13 C -0.13 -2.99 5.87 -105.04 -0.62 -3.61 16 14 C 0.56 11.81 7.51 -12.33 -0.09 11.71 16 15 O -0.53 -12.43 14.05 5.31 0.07 -12.36 16 16 N -0.68 -11.09 5.29 -10.68 -0.06 -11.15 16 17 C 0.13 2.01 6.27 -83.64 -0.52 1.49 16 18 C -0.08 -1.28 8.65 -39.40 -0.34 -1.62 16 19 C -0.19 -2.37 9.03 -39.46 -0.36 -2.72 16 20 C 0.10 1.27 6.69 -39.22 -0.26 1.01 16 21 O -0.29 -3.69 9.67 -39.57 -0.38 -4.07 16 22 C 0.04 0.33 5.22 36.01 0.19 0.51 16 23 C 0.52 4.74 8.18 -10.98 -0.09 4.65 16 24 N -0.85 -3.65 8.87 31.22 0.28 -3.37 16 25 O -0.52 -7.42 17.34 -14.35 -0.25 -7.67 16 26 C -0.12 -1.57 9.98 -39.46 -0.39 -1.96 16 27 C -0.11 -1.44 9.96 -39.41 -0.39 -1.84 16 28 C -0.08 -2.14 8.20 -38.44 -0.32 -2.46 16 29 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 30 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 32 H 0.09 1.46 6.39 -52.49 -0.34 1.13 16 33 H 0.41 5.58 6.85 -40.82 -0.28 5.30 16 34 H 0.14 2.39 6.45 -52.49 -0.34 2.05 16 35 H 0.13 1.22 6.29 -52.49 -0.33 0.89 16 36 H 0.09 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.09 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.40 0.42 8.83 -40.82 -0.36 0.06 16 39 H 0.41 1.40 8.93 -40.82 -0.36 1.04 16 40 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 41 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.14 3.81 5.78 -52.49 -0.30 3.51 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -33.80 364.92 -8.98 -42.78 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -4.35 Total: 12.40 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -5.37 Total: -15.49 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.82 Total: -34.47 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.56 Total: -24.10 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.80 -8.98 -42.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049650872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.571 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds