Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86795 * 119.99591 * 2 1 4 4 H 1.48502 * 109.47029 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.47667 * 29.99885 * 3 2 1 6 6 H 1.48508 * 109.47023 * 150.00133 * 3 2 1 7 7 C 1.39937 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99539 * 169.00820 * 7 2 1 9 9 C 1.41431 * 120.00176 * 349.01392 * 7 2 1 10 10 C 1.40787 * 120.17583 * 151.55162 * 9 7 2 11 11 C 1.37718 * 120.04153 * 179.97438 * 10 9 7 12 12 C 1.38369 * 120.41111 * 359.78364 * 11 10 9 13 13 C 1.39882 * 120.35771 * 0.47369 * 12 11 10 14 14 C 1.47860 * 120.02592 * 179.78742 * 13 12 11 15 15 O 1.21562 * 119.99945 * 179.97438 * 14 13 12 16 16 N 1.34770 * 119.99894 * 359.71904 * 14 13 12 17 17 C 1.40041 * 120.00170 * 174.94237 * 16 14 13 18 18 C 1.38868 * 120.00937 * 326.19747 * 17 16 14 19 19 C 1.38085 * 119.97742 * 179.79371 * 18 17 16 20 20 C 1.38720 * 120.01770 * 0.45932 * 19 18 17 21 21 O 1.35974 * 119.98509 * 179.77088 * 20 19 18 22 22 C 1.42898 * 116.99734 * 0.02562 * 21 20 19 23 23 C 1.50703 * 109.47079 * 180.02562 * 22 21 20 24 24 N 1.34783 * 120.00063 * 179.97438 * 23 22 21 25 25 O 1.21280 * 119.99960 * 0.02562 * 23 22 21 26 26 C 1.38727 * 120.03437 * 359.79113 * 20 19 18 27 27 C 1.38079 * 120.01797 * 359.97438 * 26 20 19 28 28 C 1.39048 * 119.94946 * 359.50339 * 13 12 11 29 29 H 0.96990 * 120.00308 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.98269 * 0.02562 * 10 9 7 31 31 H 1.08005 * 119.79013 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.81828 * 180.23173 * 12 11 10 33 33 H 0.96996 * 120.00184 * 354.93683 * 16 14 13 34 34 H 1.08001 * 120.01103 * 0.02562 * 18 17 16 35 35 H 1.07995 * 119.99031 * 180.23039 * 19 18 17 36 36 H 1.09001 * 109.47593 * 300.00105 * 22 21 20 37 37 H 1.09000 * 109.47387 * 60.00151 * 22 21 20 38 38 H 0.96994 * 119.99925 * 0.02562 * 24 23 22 39 39 H 0.96995 * 119.99396 * 180.02562 * 24 23 22 40 40 H 1.08005 * 119.98978 * 179.97438 * 26 20 19 41 41 H 1.07993 * 120.01361 * 179.97438 * 27 26 20 42 42 H 1.07998 * 120.20760 * 180.23548 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0732 -1.2205 -0.1778 9 6 1.3203 -2.4254 0.2345 10 6 1.7988 -3.6281 -0.3193 11 6 1.1273 -4.8083 -0.0893 12 6 -0.0168 -4.8230 0.6889 13 6 -0.5102 -3.6371 1.2430 14 6 -1.7359 -3.6606 2.0696 15 8 -2.1640 -2.6299 2.5513 16 7 -2.3815 -4.8239 2.2846 17 6 -3.4799 -4.8652 3.1523 18 6 -3.5151 -4.0392 4.2681 19 6 -4.6006 -4.0774 5.1208 20 6 -5.6512 -4.9474 4.8683 21 8 -6.7175 -4.9878 5.7110 22 6 -6.6893 -4.1066 6.8356 23 6 -7.9440 -4.2910 7.6499 24 7 -8.1368 -3.5599 8.7656 25 8 -8.7797 -5.0979 7.3017 26 6 -5.6143 -5.7765 3.7567 27 6 -4.5319 -5.7361 2.9004 28 6 0.1563 -2.4372 1.0209 29 1 -0.4850 0.8399 -0.0004 30 1 2.6934 -3.6254 -0.9242 31 1 1.4981 -5.7286 -0.5158 32 1 -0.5337 -5.7545 0.8662 33 1 -2.0853 -5.6326 1.8384 34 1 -2.6956 -3.3645 4.4667 35 1 -4.6298 -3.4325 5.9865 36 1 -5.8197 -4.3326 7.4527 37 1 -6.6298 -3.0753 6.4878 38 1 -7.4682 -2.9148 9.0443 39 1 -8.9442 -3.6789 9.2898 40 1 -6.4325 -6.4539 3.5610 41 1 -4.5030 -6.3818 2.0353 42 1 -0.2188 -1.5198 1.4498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049650872.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -84.941846 kcal Electronic energy + Delta-G solvation = -27234.410247 eV Core-core repulsion = 23143.407364 eV Total energy + Delta-G solvation = -4091.002883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76549 -41.06899 -40.08090 -39.04079 -38.07240 -35.72863 -35.26049 -34.79739 -32.28339 -32.04758 -31.29457 -30.29693 -28.75397 -27.18720 -24.98072 -24.11795 -23.00845 -22.65679 -21.74928 -21.15662 -19.63402 -19.42577 -18.83242 -18.38491 -17.70892 -17.38150 -17.35871 -17.01358 -16.66003 -16.40349 -15.80928 -15.76020 -15.40462 -15.32872 -15.09589 -14.92403 -14.56126 -14.31814 -14.25093 -14.03474 -13.72281 -13.50456 -13.39259 -12.93180 -12.78665 -12.54990 -12.44581 -12.20481 -12.04891 -11.86419 -11.52289 -11.14594 -11.11006 -11.03706 -10.77146 -10.72844 -10.01821 -9.54140 -9.36230 -8.72814 -8.60730 -6.40473 0.09636 0.32254 0.53895 1.00718 1.37278 1.45822 1.46351 1.52217 1.69667 2.02716 2.10830 2.20301 2.72813 2.84685 2.86044 3.67575 3.71080 3.83893 3.89407 4.00933 4.08088 4.10401 4.25170 4.37597 4.44397 4.53387 4.57769 4.83390 4.89161 5.03060 5.08108 5.16178 5.28697 5.31016 5.36520 5.43490 5.50666 5.73839 5.82649 5.85598 5.90647 6.05530 6.25766 6.27961 6.42393 6.46102 6.62777 6.88965 6.93477 7.19486 7.23195 8.34273 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.002142 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.947730 B =13070.728655 C =14527.543494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.026 3.974 3 Si 0.984 3.016 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.064 3.936 10 C -0.209 4.209 11 C -0.098 4.098 12 C -0.191 4.191 13 C -0.142 4.142 14 C 0.563 3.437 15 O -0.565 6.565 16 N -0.656 5.656 17 C 0.100 3.900 18 C -0.103 4.103 19 C -0.184 4.184 20 C 0.103 3.897 21 O -0.312 6.312 22 C 0.030 3.970 23 C 0.520 3.480 24 N -0.826 5.826 25 O -0.581 6.581 26 C -0.131 4.131 27 C -0.099 4.099 28 C -0.121 4.121 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.424 0.576 34 H 0.114 0.886 35 H 0.156 0.844 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.422 0.578 39 H 0.415 0.585 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.131 -7.977 13.671 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.188 4.188 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.062 3.938 10 C -0.229 4.229 11 C -0.116 4.116 12 C -0.210 4.210 13 C -0.145 4.145 14 C 0.355 3.645 15 O -0.444 6.444 16 N -0.303 5.303 17 C 0.006 3.994 18 C -0.123 4.123 19 C -0.203 4.203 20 C 0.058 3.942 21 O -0.226 6.226 22 C -0.049 4.049 23 C 0.304 3.696 24 N -0.392 5.392 25 O -0.460 6.460 26 C -0.150 4.150 27 C -0.119 4.119 28 C -0.141 4.141 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.264 0.736 34 H 0.132 0.868 35 H 0.174 0.826 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.254 0.746 39 H 0.248 0.752 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.165 -7.762 13.611 19.239 hybrid contribution 0.597 1.207 0.061 1.348 sum -10.568 -6.555 13.672 18.481 Atomic orbital electron populations 1.69865 1.09027 1.30344 1.36788 1.26834 0.95542 1.04859 0.91528 0.85165 0.78973 0.75817 0.79551 1.18435 1.19784 1.17827 1.19845 0.96380 0.91385 1.45028 0.89882 1.17969 0.92121 0.93967 0.89787 1.21495 1.03138 0.93421 1.04803 1.20949 0.95144 0.97547 0.97975 1.20920 0.99807 0.95756 1.04556 1.19677 0.95996 0.95894 1.02946 1.18822 0.83614 0.82755 0.79347 1.90689 1.67536 1.34065 1.52118 1.43282 1.29869 1.11561 1.45610 1.17977 0.89532 1.00537 0.91365 1.20987 0.99223 0.99066 0.93039 1.21250 0.94070 1.02173 1.02772 1.19048 0.86914 0.96529 0.91721 1.86109 1.40139 1.60300 1.36029 1.22756 0.97818 0.96408 0.87868 1.20351 0.87244 0.80194 0.81831 1.43479 1.26998 1.42721 1.26042 1.90785 1.46987 1.37396 1.70842 1.20454 0.99908 1.01139 0.93506 1.20946 0.90628 0.99915 1.00380 1.21504 0.97549 0.96051 0.99028 0.90481 0.87212 0.84149 0.84265 0.73631 0.86772 0.82622 0.85917 0.86530 0.74555 0.75246 0.83057 0.82113 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.09 10.83 21.83 0.24 -45.85 16 2 C 0.03 1.34 5.25 85.25 0.45 1.79 16 3 Si 0.98 39.20 29.57 68.60 2.03 41.23 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 7 C -0.50 -26.61 9.06 23.47 0.21 -26.40 16 8 H 0.08 4.19 7.87 -2.91 -0.02 4.17 16 9 C 0.06 3.39 5.55 -21.32 -0.12 3.27 16 10 C -0.21 -9.45 9.78 22.77 0.22 -9.22 16 11 C -0.10 -3.71 10.01 22.18 0.22 -3.49 16 12 C -0.19 -7.10 9.54 22.70 0.22 -6.88 16 13 C -0.14 -6.45 5.87 -20.14 -0.12 -6.57 16 14 C 0.56 23.89 7.51 86.79 0.65 24.54 16 15 O -0.56 -28.03 14.05 -3.91 -0.05 -28.09 16 16 N -0.66 -20.64 5.29 -305.97 -1.62 -22.25 16 17 C 0.10 2.94 6.27 38.13 0.24 3.18 16 18 C -0.10 -3.15 8.65 22.38 0.19 -2.96 16 19 C -0.18 -4.38 9.03 22.35 0.20 -4.18 16 20 C 0.10 2.46 6.69 22.50 0.15 2.61 16 21 O -0.31 -7.28 9.67 -74.22 -0.72 -8.00 16 22 C 0.03 0.42 5.22 71.24 0.37 0.79 16 23 C 0.52 8.62 8.18 87.66 0.72 9.34 16 24 N -0.83 -5.18 8.87 -173.52 -1.54 -6.72 16 25 O -0.58 -16.41 17.34 16.01 0.28 -16.13 16 26 C -0.13 -2.98 9.98 22.35 0.22 -2.76 16 27 C -0.10 -2.28 9.96 22.38 0.22 -2.06 16 28 C -0.12 -6.53 8.20 23.01 0.19 -6.34 16 29 H 0.28 14.56 8.30 -92.72 -0.77 13.79 16 30 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 32 H 0.14 3.79 6.39 -2.91 -0.02 3.77 16 33 H 0.42 10.27 6.85 -92.71 -0.64 9.64 16 34 H 0.11 4.09 6.45 -2.91 -0.02 4.07 16 35 H 0.16 2.63 6.29 -2.91 -0.02 2.61 16 36 H 0.12 1.01 7.66 -2.39 -0.02 1.00 16 37 H 0.12 1.14 7.66 -2.39 -0.02 1.12 16 38 H 0.42 -0.40 8.83 -92.71 -0.82 -1.22 16 39 H 0.41 2.02 8.93 -92.71 -0.83 1.20 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 41 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 42 H 0.10 6.19 5.78 -2.91 -0.02 6.18 16 Total: -1.00 -80.49 364.92 1.70 -78.79 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -1.16 Total: 32.36 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 4.24 Total: -25.34 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.92 Total: -74.83 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.50 Total: -52.21 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -80.49 1.70 -78.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049650872.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.151 kcal (2) G-P(sol) polarization free energy of solvation -80.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds