Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86791 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47169 * 240.00024 * 3 2 1 5 5 H 1.48502 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47576 * 119.99728 * 3 2 1 7 7 C 1.39935 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 197.88461 * 7 2 1 9 9 C 1.41442 * 120.00083 * 17.88495 * 7 2 1 10 10 C 1.40797 * 120.17347 * 204.44607 * 9 7 2 11 11 C 1.37712 * 120.04863 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.42094 * 359.74688 * 11 10 9 13 13 C 1.39926 * 120.34960 * 0.50657 * 12 11 10 14 14 C 1.47770 * 120.02725 * 179.76534 * 13 12 11 15 15 O 1.21471 * 119.99547 * 179.72509 * 14 13 12 16 16 O 1.34698 * 120.00216 * 359.72948 * 14 13 12 17 17 C 1.45203 * 117.00294 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47246 * 179.97438 * 17 16 14 19 19 N 1.46496 * 109.47113 * 65.00310 * 18 17 16 20 20 C 1.34778 * 120.00032 * 179.72241 * 19 18 17 21 21 O 1.21508 * 119.99842 * 359.97438 * 20 19 18 22 22 C 1.48148 * 119.99939 * 180.02562 * 20 19 18 23 23 C 1.39817 * 120.92354 * 359.71638 * 22 20 19 24 24 C 1.38152 * 119.00537 * 179.80069 * 23 22 20 25 25 N 1.31820 * 120.88908 * 0.49028 * 24 23 22 26 26 C 1.31808 * 122.04955 * 359.73449 * 25 24 23 27 27 C 1.38142 * 120.90048 * 0.02812 * 26 25 24 28 28 C 1.39083 * 119.93885 * 359.49319 * 13 12 11 29 29 H 0.96998 * 119.99503 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.97460 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78810 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.82241 * 180.27812 * 12 11 10 33 33 H 1.09000 * 109.46270 * 60.00010 * 17 16 14 34 34 H 1.08999 * 109.46746 * 300.00414 * 17 16 14 35 35 H 1.09003 * 109.47244 * 305.00283 * 18 17 16 36 36 H 1.09001 * 109.46991 * 185.00238 * 18 17 16 37 37 H 0.97002 * 120.00110 * 359.97438 * 19 18 17 38 38 H 1.08003 * 120.50039 * 359.97438 * 23 22 20 39 39 H 1.07994 * 119.55715 * 180.22799 * 24 23 22 40 40 H 1.08005 * 119.54523 * 180.02562 * 26 25 24 41 41 H 1.08000 * 120.50135 * 179.97438 * 27 26 25 42 42 H 1.08009 * 120.20676 * 180.22930 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2345 0.2878 9 6 1.3519 -2.4074 -0.3751 10 6 1.8261 -3.6500 0.0868 11 6 1.1857 -4.8124 -0.2810 12 6 0.0716 -4.7694 -1.1004 13 6 -0.4112 -3.5443 -1.5736 14 6 -1.5985 -3.5070 -2.4524 15 8 -2.0201 -2.4428 -2.8588 16 8 -2.2133 -4.6531 -2.8028 17 6 -3.3740 -4.5408 -3.6681 18 6 -3.9327 -5.9358 -3.9556 19 7 -4.4322 -6.5276 -2.7121 20 6 -4.9785 -7.7597 -2.7241 21 8 -5.0570 -8.3793 -3.7663 22 6 -5.4842 -8.3579 -1.4666 23 6 -5.3991 -7.6641 -0.2557 24 6 -5.8869 -8.2579 0.8923 25 7 -6.4173 -9.4642 0.8574 26 6 -6.5126 -10.1542 -0.2616 27 6 -6.0544 -9.6345 -1.4567 28 6 0.2241 -2.3612 -1.2113 29 1 -0.4849 0.8401 0.0004 30 1 2.6931 -3.6917 0.7293 31 1 1.5528 -5.7633 0.0761 32 1 -0.4259 -5.6866 -1.3791 33 1 -3.0838 -4.0657 -4.6052 34 1 -4.1370 -3.9377 -3.1759 35 1 -3.1436 -6.5657 -4.3665 36 1 -4.7481 -5.8594 -4.6749 37 1 -4.3732 -6.0313 -1.8808 38 1 -4.9612 -6.6775 -0.2189 39 1 -5.8291 -7.7284 1.8318 40 1 -6.9550 -11.1393 -0.2438 41 1 -6.1354 -10.2057 -2.3697 42 1 -0.1470 -1.4129 -1.5711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056218080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -69.121227 kcal Electronic energy + Delta-G solvation = -27428.690347 eV Core-core repulsion = 23338.373498 eV Total energy + Delta-G solvation = -4090.316849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89179 -39.98190 -39.24712 -37.52777 -36.26226 -34.94261 -33.83672 -33.09669 -31.63853 -30.66623 -29.71869 -29.52517 -25.56978 -25.24068 -23.96481 -23.55775 -22.25322 -21.09789 -21.06210 -19.97138 -18.66529 -17.96881 -17.14849 -16.70517 -16.24816 -16.12244 -15.99286 -15.63338 -15.49870 -15.32180 -14.96936 -14.70094 -14.20366 -14.16331 -13.80254 -13.66493 -13.38949 -13.15643 -12.78821 -12.70671 -12.53775 -12.07208 -11.78836 -11.74930 -11.26833 -11.18628 -10.86198 -10.65859 -10.60839 -10.42677 -10.31736 -10.26972 -9.84260 -9.82499 -9.62553 -9.57304 -9.40205 -9.31309 -7.84610 -7.65074 -6.91562 -4.52305 0.35900 0.72428 1.85779 2.57617 2.70639 2.71878 3.00326 3.01253 3.02537 3.08035 3.47767 3.51933 3.83506 4.06570 4.19531 4.39288 4.48659 4.57103 4.58676 4.70505 4.90931 5.12301 5.15552 5.23458 5.38605 5.43233 5.45206 5.55050 5.67626 5.69958 6.01730 6.04791 6.22642 6.29973 6.51959 6.77742 6.84722 6.87945 7.08228 7.10530 7.21381 7.53903 7.58232 7.65597 7.80132 7.81720 8.01091 8.35046 8.39923 8.67929 8.70030 10.03703 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.002265 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.247819 B =12360.318384 C =13045.982900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.103 4.103 12 C -0.195 4.195 13 C -0.116 4.116 14 C 0.513 3.487 15 O -0.516 6.516 16 O -0.356 6.356 17 C 0.050 3.950 18 C 0.124 3.876 19 N -0.716 5.716 20 C 0.559 3.441 21 O -0.532 6.532 22 C -0.087 4.087 23 C -0.139 4.139 24 C 0.098 3.902 25 N -0.470 5.470 26 C 0.094 3.906 27 C -0.116 4.116 28 C -0.090 4.090 29 H 0.286 0.714 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.407 0.593 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.902 -11.673 -2.052 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.121 4.121 12 C -0.215 4.215 13 C -0.117 4.117 14 C 0.360 3.640 15 O -0.405 6.405 16 O -0.274 6.274 17 C -0.025 4.025 18 C 0.001 3.999 19 N -0.368 5.368 20 C 0.345 3.655 21 O -0.409 6.409 22 C -0.098 4.098 23 C -0.160 4.160 24 C -0.058 4.058 25 N -0.180 5.180 26 C -0.062 4.062 27 C -0.137 4.137 28 C -0.109 4.109 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.243 0.757 38 H 0.159 0.841 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.166 0.834 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.613 -11.971 -2.189 16.821 hybrid contribution 0.598 1.539 -0.404 1.699 sum -11.015 -10.432 -2.593 15.391 Atomic orbital electron populations 1.69765 1.07623 1.29983 1.33712 1.25971 0.94799 1.01645 0.92172 0.86294 0.80114 0.79904 0.80081 1.18671 1.20197 1.18871 1.19555 0.98303 0.90931 1.39975 0.89917 1.17543 0.91133 0.92612 0.89417 1.21197 1.03196 0.92692 1.04969 1.20514 0.96064 0.96927 0.98595 1.20535 1.00262 0.95206 1.05463 1.18806 0.94956 0.95917 1.02018 1.21911 0.83041 0.80758 0.78301 1.90780 1.65085 1.31130 1.53512 1.86635 1.41755 1.36405 1.62604 1.23185 0.87204 0.96520 0.95553 1.21513 0.99243 0.92753 0.86418 1.45871 1.61227 1.17314 1.12413 1.18160 0.77860 0.81282 0.88176 1.90781 1.56472 1.61335 1.32347 1.20371 0.99947 0.95845 0.93658 1.22443 0.99329 1.01300 0.92893 1.22831 0.93527 0.91136 0.98328 1.67585 1.12960 1.07448 1.29985 1.22835 0.96336 0.99768 0.87303 1.22323 0.96164 0.94567 1.00643 1.21656 0.96561 0.96001 0.96689 0.90318 0.88311 0.88544 0.87979 0.89414 0.90611 0.89713 0.88985 0.75724 0.84052 0.81821 0.81955 0.83421 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 10.96 55.55 0.61 -19.22 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.52 9.05 -37.73 -0.34 -11.86 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 9 C 0.10 2.41 5.57 -106.87 -0.60 1.81 16 10 C -0.20 -4.55 9.78 -38.81 -0.38 -4.93 16 11 C -0.10 -2.12 10.01 -39.73 -0.40 -2.51 16 12 C -0.19 -4.04 9.62 -38.90 -0.37 -4.41 16 13 C -0.12 -2.62 5.87 -105.05 -0.62 -3.23 16 14 C 0.51 10.51 7.90 34.63 0.27 10.78 16 15 O -0.52 -11.63 16.12 -19.24 -0.31 -11.94 16 16 O -0.36 -5.78 9.41 -40.48 -0.38 -6.16 16 17 C 0.05 0.61 5.60 37.16 0.21 0.81 16 18 C 0.12 1.28 6.07 -4.05 -0.02 1.25 16 19 N -0.72 -7.46 5.47 -61.16 -0.33 -7.79 16 20 C 0.56 6.56 7.80 -12.19 -0.10 6.46 16 21 O -0.53 -7.75 16.45 5.36 0.09 -7.66 16 22 C -0.09 -0.88 5.91 -104.65 -0.62 -1.50 16 23 C -0.14 -1.20 9.62 -39.02 -0.38 -1.58 16 24 C 0.10 0.85 11.17 -17.59 -0.20 0.66 16 25 N -0.47 -4.65 10.34 -13.31 -0.14 -4.79 16 26 C 0.09 0.79 11.17 -17.60 -0.20 0.60 16 27 C -0.12 -1.06 9.68 -39.03 -0.38 -1.44 16 28 C -0.09 -2.27 8.24 -38.43 -0.32 -2.58 16 29 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 30 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.10 1.89 7.59 -52.49 -0.40 1.49 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.41 3.75 6.62 -40.82 -0.27 3.48 16 38 H 0.14 0.97 6.54 -52.48 -0.34 0.62 16 39 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.15 1.23 7.74 -52.49 -0.41 0.83 16 42 H 0.14 3.67 5.74 -52.48 -0.30 3.36 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -30.80 373.07 -9.04 -39.84 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.65 Total: 9.12 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -4.51 Total: -9.99 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.14 Total: -31.81 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.60 Total: -25.76 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.80 -9.04 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056218080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.280 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds