Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86791 * 120.00282 * 2 1 4 4 H 1.48496 * 109.47169 * 240.00024 * 3 2 1 5 5 H 1.48502 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47576 * 119.99728 * 3 2 1 7 7 C 1.39935 * 119.99518 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00038 * 197.88461 * 7 2 1 9 9 C 1.41442 * 120.00083 * 17.88495 * 7 2 1 10 10 C 1.40797 * 120.17347 * 204.44607 * 9 7 2 11 11 C 1.37712 * 120.04863 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.42094 * 359.74688 * 11 10 9 13 13 C 1.39926 * 120.34960 * 0.50657 * 12 11 10 14 14 C 1.47770 * 120.02725 * 179.76534 * 13 12 11 15 15 O 1.21471 * 119.99547 * 179.72509 * 14 13 12 16 16 O 1.34698 * 120.00216 * 359.72948 * 14 13 12 17 17 C 1.45203 * 117.00294 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47246 * 179.97438 * 17 16 14 19 19 N 1.46496 * 109.47113 * 65.00310 * 18 17 16 20 20 C 1.34778 * 120.00032 * 179.72241 * 19 18 17 21 21 O 1.21508 * 119.99842 * 359.97438 * 20 19 18 22 22 C 1.48148 * 119.99939 * 180.02562 * 20 19 18 23 23 C 1.39817 * 120.92354 * 359.71638 * 22 20 19 24 24 C 1.38152 * 119.00537 * 179.80069 * 23 22 20 25 25 N 1.31820 * 120.88908 * 0.49028 * 24 23 22 26 26 C 1.31808 * 122.04955 * 359.73449 * 25 24 23 27 27 C 1.38142 * 120.90048 * 0.02812 * 26 25 24 28 28 C 1.39083 * 119.93885 * 359.49319 * 13 12 11 29 29 H 0.96998 * 119.99503 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.97460 * 359.97438 * 10 9 7 31 31 H 1.08005 * 119.78810 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.82241 * 180.27812 * 12 11 10 33 33 H 1.09000 * 109.46270 * 60.00010 * 17 16 14 34 34 H 1.08999 * 109.46746 * 300.00414 * 17 16 14 35 35 H 1.09003 * 109.47244 * 305.00283 * 18 17 16 36 36 H 1.09001 * 109.46991 * 185.00238 * 18 17 16 37 37 H 0.97002 * 120.00110 * 359.97438 * 19 18 17 38 38 H 1.08003 * 120.50039 * 359.97438 * 23 22 20 39 39 H 1.07994 * 119.55715 * 180.22799 * 24 23 22 40 40 H 1.08005 * 119.54523 * 180.02562 * 26 25 24 41 41 H 1.08000 * 120.50135 * 179.97438 * 27 26 25 42 42 H 1.08009 * 120.20676 * 180.22930 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2345 0.2878 9 6 1.3519 -2.4074 -0.3751 10 6 1.8261 -3.6500 0.0868 11 6 1.1857 -4.8124 -0.2810 12 6 0.0716 -4.7694 -1.1004 13 6 -0.4112 -3.5443 -1.5736 14 6 -1.5985 -3.5070 -2.4524 15 8 -2.0201 -2.4428 -2.8588 16 8 -2.2133 -4.6531 -2.8028 17 6 -3.3740 -4.5408 -3.6681 18 6 -3.9327 -5.9358 -3.9556 19 7 -4.4322 -6.5276 -2.7121 20 6 -4.9785 -7.7597 -2.7241 21 8 -5.0570 -8.3793 -3.7663 22 6 -5.4842 -8.3579 -1.4666 23 6 -5.3991 -7.6641 -0.2557 24 6 -5.8869 -8.2579 0.8923 25 7 -6.4173 -9.4642 0.8574 26 6 -6.5126 -10.1542 -0.2616 27 6 -6.0544 -9.6345 -1.4567 28 6 0.2241 -2.3612 -1.2113 29 1 -0.4849 0.8401 0.0004 30 1 2.6931 -3.6917 0.7293 31 1 1.5528 -5.7633 0.0761 32 1 -0.4259 -5.6866 -1.3791 33 1 -3.0838 -4.0657 -4.6052 34 1 -4.1370 -3.9377 -3.1759 35 1 -3.1436 -6.5657 -4.3665 36 1 -4.7481 -5.8594 -4.6749 37 1 -4.3732 -6.0313 -1.8808 38 1 -4.9612 -6.6775 -0.2189 39 1 -5.8291 -7.7284 1.8318 40 1 -6.9550 -11.1393 -0.2438 41 1 -6.1354 -10.2057 -2.3697 42 1 -0.1470 -1.4129 -1.5711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056218080.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -86.811268 kcal Electronic energy + Delta-G solvation = -27429.457445 eV Core-core repulsion = 23338.373498 eV Total energy + Delta-G solvation = -4091.083947 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71569 -41.40580 -40.12345 -39.20369 -37.68210 -36.01981 -35.60102 -33.85529 -32.39474 -32.19824 -31.37102 -30.72402 -27.30632 -26.20836 -25.13157 -24.43867 -23.35283 -22.83343 -21.93618 -21.55224 -19.69114 -19.43234 -18.27307 -17.98837 -17.70824 -17.31557 -16.77905 -16.68578 -16.48393 -16.46945 -16.44374 -16.11650 -15.29397 -15.07639 -14.93926 -14.81511 -14.59830 -14.43946 -14.31062 -13.95457 -13.84576 -13.48437 -13.00889 -12.91814 -12.81764 -12.67163 -12.56347 -12.22591 -12.04043 -11.83131 -11.55628 -11.46261 -11.29388 -11.07943 -11.02817 -10.55391 -10.29449 -10.21325 -9.61379 -9.44100 -8.69099 -6.39519 -0.38049 0.08188 0.13586 0.97506 1.38255 1.47076 1.50945 1.60235 1.74623 1.80300 1.91008 2.19068 2.72238 2.82765 3.40624 3.49016 3.55984 3.63313 3.80565 3.91200 3.92477 3.96318 4.05883 4.27990 4.40704 4.52752 4.54052 4.62986 4.64817 4.79420 4.80461 4.86607 5.00604 5.05399 5.13112 5.15399 5.25642 5.28487 5.45154 5.59474 5.81625 5.89989 6.01396 6.23601 6.26421 6.53099 6.80615 6.86771 6.88737 6.88916 6.93394 8.28088 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015610 B = 0.002265 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.247819 B =12360.318384 C =13045.982900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.032 3.968 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.494 4.494 8 H 0.086 0.914 9 C 0.065 3.935 10 C -0.204 4.204 11 C -0.100 4.100 12 C -0.178 4.178 13 C -0.127 4.127 14 C 0.520 3.480 15 O -0.543 6.543 16 O -0.347 6.347 17 C 0.048 3.952 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.560 3.440 21 O -0.566 6.566 22 C -0.103 4.103 23 C -0.137 4.137 24 C 0.092 3.908 25 N -0.491 5.491 26 C 0.094 3.906 27 C -0.122 4.122 28 C -0.123 4.123 29 H 0.288 0.712 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.413 0.587 38 H 0.158 0.842 39 H 0.186 0.814 40 H 0.190 0.810 41 H 0.151 0.849 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -13.073 -1.656 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.104 0.896 9 C 0.063 3.937 10 C -0.224 4.224 11 C -0.118 4.118 12 C -0.198 4.198 13 C -0.128 4.128 14 C 0.367 3.633 15 O -0.435 6.435 16 O -0.264 6.264 17 C -0.026 4.026 18 C 0.008 3.992 19 N -0.363 5.363 20 C 0.348 3.652 21 O -0.445 6.445 22 C -0.114 4.114 23 C -0.157 4.157 24 C -0.064 4.064 25 N -0.200 5.200 26 C -0.062 4.062 27 C -0.142 4.142 28 C -0.143 4.143 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.250 0.750 38 H 0.175 0.825 39 H 0.203 0.797 40 H 0.207 0.793 41 H 0.169 0.831 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.763 -13.393 -1.777 17.914 hybrid contribution 0.557 1.751 -0.557 1.920 sum -11.205 -11.642 -2.334 16.326 Atomic orbital electron populations 1.69850 1.09113 1.30815 1.35134 1.26807 0.95436 1.04811 0.91274 0.85255 0.78756 0.75572 0.80244 1.18568 1.19646 1.17773 1.19829 0.98695 0.92026 1.41795 0.89627 1.17896 0.91765 0.93947 0.90085 1.21489 1.03570 0.92614 1.04728 1.20946 0.95364 0.97884 0.97593 1.20918 0.99711 0.95385 1.03748 1.19055 0.95630 0.95889 1.02237 1.21556 0.82660 0.81271 0.77765 1.90766 1.65802 1.32433 1.54481 1.86583 1.42848 1.34026 1.62921 1.23504 0.85803 0.98035 0.95225 1.21506 0.99648 0.91305 0.86738 1.45865 1.60642 1.17066 1.12765 1.18382 0.77355 0.81225 0.88284 1.90762 1.57996 1.62203 1.33587 1.20391 1.01024 0.96560 0.93470 1.22602 0.99003 1.01830 0.92298 1.23233 0.92947 0.90987 0.99224 1.67641 1.13578 1.08153 1.30663 1.23250 0.95714 1.00635 0.86600 1.22460 0.96156 0.94439 1.01188 1.21466 0.98149 0.95999 0.98698 0.90113 0.86958 0.84467 0.84989 0.88616 0.89739 0.90138 0.87017 0.74956 0.82458 0.79720 0.79349 0.83084 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.29 10.96 21.82 0.24 -43.05 16 2 C 0.03 1.59 5.14 85.25 0.44 2.03 16 3 Si 0.98 37.62 29.59 68.60 2.03 39.65 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.49 -25.58 9.05 23.47 0.21 -25.37 16 8 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 9 C 0.07 3.37 5.57 -21.32 -0.12 3.25 16 10 C -0.20 -9.09 9.78 22.77 0.22 -8.87 16 11 C -0.10 -3.84 10.01 22.18 0.22 -3.62 16 12 C -0.18 -6.95 9.62 22.71 0.22 -6.73 16 13 C -0.13 -5.71 5.87 -20.14 -0.12 -5.83 16 14 C 0.52 21.07 7.90 70.34 0.56 21.63 16 15 O -0.54 -24.82 16.12 19.93 0.32 -24.50 16 16 O -0.35 -10.61 9.41 -56.07 -0.53 -11.14 16 17 C 0.05 1.08 5.60 71.98 0.40 1.48 16 18 C 0.13 2.43 6.07 86.38 0.52 2.96 16 19 N -0.71 -13.44 5.47 -465.69 -2.55 -15.99 16 20 C 0.56 12.39 7.80 86.88 0.68 13.06 16 21 O -0.57 -15.97 16.45 -3.74 -0.06 -16.03 16 22 C -0.10 -1.95 5.91 -19.88 -0.12 -2.07 16 23 C -0.14 -2.11 9.62 22.63 0.22 -1.89 16 24 C 0.09 1.42 11.17 84.67 0.95 2.37 16 25 N -0.49 -8.86 10.34 -196.01 -2.03 -10.88 16 26 C 0.09 1.43 11.17 84.67 0.95 2.38 16 27 C -0.12 -2.08 9.68 22.63 0.22 -1.86 16 28 C -0.12 -6.44 8.24 23.02 0.19 -6.25 16 29 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 30 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 31 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 32 H 0.13 4.35 7.59 -2.91 -0.02 4.33 16 33 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 6.71 6.62 -92.71 -0.61 6.10 16 38 H 0.16 1.79 6.54 -2.91 -0.02 1.77 16 39 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 40 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.15 2.40 7.74 -2.91 -0.02 2.38 16 42 H 0.11 6.11 5.74 -2.91 -0.02 6.10 16 Total: -1.00 -68.51 373.07 3.53 -64.97 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.46 Total: 30.29 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 5.64 Total: -13.33 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -4.33 Total: -69.92 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.27 Total: -51.67 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -68.51 3.53 -64.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056218080.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds