Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47098 * 239.99593 * 3 2 1 5 5 H 1.48496 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47183 * 120.00183 * 3 2 1 7 7 C 1.37877 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99960 * 278.11172 * 10 9 7 12 12 C 1.50709 * 109.47023 * 270.00111 * 11 10 9 13 13 C 1.38681 * 120.41536 * 269.72147 * 12 11 10 14 14 C 1.38627 * 118.41546 * 179.78085 * 13 12 11 15 15 C 1.38225 * 119.16093 * 0.51988 * 14 13 12 16 16 N 1.31845 * 120.76638 * 359.71880 * 15 14 13 17 17 C 1.31891 * 121.72869 * 0.02562 * 16 15 14 18 18 C 1.34769 * 120.00004 * 98.10989 * 10 9 7 19 19 O 1.21588 * 120.00555 * 186.14811 * 18 10 9 20 20 C 1.47614 * 119.99922 * 6.15354 * 18 10 9 21 21 C 1.39699 * 120.08132 * 330.25616 * 20 18 10 22 22 C 1.37767 * 120.00114 * 179.74936 * 21 20 18 23 23 C 1.38856 * 120.21962 * 0.45260 * 22 21 20 24 24 C 1.39539 * 120.05431 * 359.55350 * 23 22 21 25 25 C 1.38122 * 119.98417 * 0.22065 * 24 23 22 26 26 O 1.36541 * 108.59514 * 180.24128 * 24 23 22 27 27 C 1.43980 * 105.44473 * 342.68956 * 26 24 23 28 28 O 1.36359 * 131.34966 * 179.86409 * 23 22 21 29 29 H 0.97004 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47114 * 59.99810 * 9 7 2 31 31 H 1.08993 * 109.47381 * 299.99407 * 9 7 2 32 32 H 1.08998 * 109.47618 * 29.99621 * 11 10 9 33 33 H 1.09000 * 109.47347 * 150.00391 * 11 10 9 34 34 H 1.07992 * 120.78960 * 0.02562 * 13 12 11 35 35 H 1.08005 * 120.41417 * 180.21866 * 14 13 12 36 36 H 1.08004 * 119.61478 * 179.74687 * 15 14 13 37 37 H 1.07995 * 119.61829 * 180.02562 * 17 16 15 38 38 H 1.08001 * 119.99519 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.88310 * 180.30352 * 22 21 20 40 40 H 1.07998 * 120.04847 * 180.02562 * 25 24 23 41 41 H 1.08998 * 110.56606 * 268.61175 * 27 26 24 42 42 H 1.09004 * 110.56395 * 145.76348 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.8151 -4.0530 -1.2555 12 6 1.9558 -5.1182 -1.8867 13 6 2.1682 -6.4568 -1.5932 14 6 1.3505 -7.4016 -2.1936 15 6 0.3648 -6.9817 -3.0670 16 7 0.1948 -5.7002 -3.3265 17 6 0.9505 -4.7736 -2.7698 18 6 2.5158 -4.2318 1.1560 19 8 3.3871 -5.0797 1.1750 20 6 1.8005 -3.8807 2.3986 21 6 1.2954 -2.5902 2.5750 22 6 0.6236 -2.2658 3.7332 23 6 0.4541 -3.2152 4.7322 24 6 0.9564 -4.5059 4.5621 25 6 1.6268 -4.8383 3.4011 26 8 0.6564 -5.2398 5.6737 27 6 0.3276 -4.2765 6.6920 28 8 -0.1587 -3.1438 5.9482 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.9004 -3.2052 -1.9351 33 1 3.8067 -4.4584 -1.0540 34 1 2.9493 -6.7558 -0.9100 35 1 1.4851 -8.4528 -1.9853 36 1 -0.2737 -7.7118 -3.5421 37 1 0.7812 -3.7336 -3.0064 38 1 1.4284 -1.8480 1.8018 39 1 0.2296 -1.2689 3.8654 40 1 2.0156 -5.8370 3.2682 41 1 1.2150 -4.0064 7.2644 42 1 -0.4499 -4.6650 7.3498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060625025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -3.609485 kcal Electronic energy + Delta-G solvation = -29313.011809 eV Core-core repulsion = 25225.535762 eV Total energy + Delta-G solvation = -4087.476047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97319 -40.17851 -39.35603 -36.91303 -36.14453 -35.51595 -33.30323 -32.23355 -31.46910 -30.37633 -29.79879 -27.74487 -26.44249 -25.51771 -23.62231 -23.32557 -22.85339 -22.45198 -21.70246 -19.38640 -18.00588 -17.48570 -17.14097 -17.02355 -16.63875 -16.19132 -16.02450 -15.55635 -15.26897 -15.10449 -14.54013 -14.25830 -14.12689 -13.89637 -13.60681 -13.35593 -13.32934 -12.99809 -12.84314 -12.78116 -12.67560 -12.52796 -12.38877 -11.81718 -11.38534 -11.24603 -11.07658 -10.99587 -10.65430 -10.40147 -10.05161 -9.86320 -9.63884 -9.31918 -9.25234 -8.81731 -8.73707 -8.54906 -7.94080 -7.74248 -6.38841 -4.50304 1.14133 1.28649 1.50877 1.57881 2.82687 3.14802 3.21310 3.22376 3.31144 3.49983 3.74586 4.08574 4.14970 4.24036 4.66374 4.70043 4.71289 4.89198 4.92035 5.00656 5.14346 5.15562 5.25228 5.32076 5.36043 5.44477 5.61516 5.74379 5.82917 5.86981 6.03597 6.14820 6.28882 6.30670 6.33440 6.49223 6.51271 6.61247 6.76139 6.92451 6.99992 7.04100 7.30523 7.37620 7.55695 7.79176 8.11708 8.18273 8.58050 8.79121 9.18824 10.65134 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007388 B = 0.005124 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3789.062458 B = 5463.026998 C = 8290.193134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.068 0.932 9 C 0.206 3.794 10 N -0.582 5.582 11 C 0.161 3.839 12 C -0.146 4.146 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.090 3.910 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.566 3.434 19 O -0.566 6.566 20 C -0.130 4.130 21 C -0.078 4.078 22 C -0.113 4.113 23 C 0.049 3.951 24 C -0.001 4.001 25 C -0.047 4.047 26 O -0.312 6.312 27 C 0.213 3.787 28 O -0.310 6.310 29 H 0.271 0.729 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.159 0.841 38 H 0.218 0.782 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.080 0.920 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.001 -8.148 4.069 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.135 4.135 3 Si 0.724 3.276 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.086 0.914 9 C 0.087 3.913 10 N -0.310 5.310 11 C 0.037 3.963 12 C -0.150 4.150 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.067 4.067 16 N -0.198 5.198 17 C -0.041 4.041 18 C 0.355 3.645 19 O -0.447 6.447 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.132 4.132 23 C 0.005 3.995 24 C -0.045 4.045 25 C -0.067 4.067 26 O -0.229 6.229 27 C 0.101 3.899 28 O -0.227 6.227 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.233 0.767 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.097 0.903 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.438 -8.261 3.611 9.027 hybrid contribution 0.828 0.587 0.980 1.411 sum 1.265 -7.675 4.591 9.032 Atomic orbital electron populations 1.69921 1.05978 1.28111 1.47252 1.25002 0.94909 0.99484 0.94067 0.86546 0.79679 0.82193 0.79191 1.19854 1.20956 1.19746 1.21413 0.94118 0.90074 1.53322 0.91371 1.20378 0.88195 0.82404 1.00353 1.48040 1.44527 1.33658 1.04812 1.20162 0.95006 0.95265 0.85837 1.21427 0.99233 0.95707 0.98584 1.21661 0.97965 0.92436 0.96368 1.22103 0.97837 1.00609 0.99542 1.22700 0.95865 0.92850 0.95281 1.67708 1.26104 1.01783 1.24162 1.22828 0.90017 0.99232 0.92019 1.17980 0.82302 0.80813 0.83365 1.90671 1.32660 1.34935 1.86456 1.19593 1.03806 0.94769 0.95144 1.23465 0.90901 0.98121 0.97000 1.20241 1.02675 0.98475 0.91789 1.20220 0.96231 0.94887 0.88199 1.19424 1.04071 0.89457 0.91544 1.19896 0.96562 1.00602 0.89616 1.87330 1.84944 1.30831 1.19776 1.25537 0.99210 0.75962 0.89210 1.87306 1.63812 1.47443 1.24097 0.91898 0.94494 0.91491 0.88586 0.89474 0.84523 0.85243 0.83287 0.82392 0.76682 0.84367 0.84558 0.90252 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.63 13.29 55.43 0.74 -20.89 16 2 C 0.07 1.68 5.33 -17.82 -0.09 1.58 16 3 Si 0.90 18.69 29.54 -169.99 -5.02 13.67 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.55 -12.63 7.46 -34.44 -0.26 -12.89 16 8 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.21 4.42 4.64 -5.19 -0.02 4.39 16 10 N -0.58 -11.35 2.45 -177.63 -0.43 -11.79 16 11 C 0.16 2.73 5.61 -5.19 -0.03 2.70 16 12 C -0.15 -2.35 5.48 -104.48 -0.57 -2.92 16 13 C -0.06 -0.86 9.86 -39.27 -0.39 -1.25 16 14 C -0.18 -2.36 10.11 -39.44 -0.40 -2.75 16 15 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 16 N -0.49 -7.91 10.36 -13.26 -0.14 -8.05 16 17 C 0.12 1.89 10.86 -17.55 -0.19 1.70 16 18 C 0.57 11.44 7.45 -12.44 -0.09 11.35 16 19 O -0.57 -11.96 16.21 5.29 0.09 -11.88 16 20 C -0.13 -2.52 5.58 -104.97 -0.59 -3.11 16 21 C -0.08 -1.52 7.47 -39.21 -0.29 -1.81 16 22 C -0.11 -2.03 10.04 -39.52 -0.40 -2.43 16 23 C 0.05 0.85 7.16 -38.87 -0.28 0.57 16 24 C 0.00 -0.02 7.14 -39.14 -0.28 -0.30 16 25 C -0.05 -0.85 9.60 -39.07 -0.38 -1.22 16 26 O -0.31 -4.80 11.41 -45.82 -0.52 -5.32 16 27 C 0.21 2.51 8.88 101.05 0.90 3.41 16 28 O -0.31 -4.78 11.39 -45.23 -0.52 -5.30 16 29 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 30 H 0.04 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.07 1.51 4.08 -51.97 -0.21 1.30 16 32 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 33 H 0.09 1.45 7.30 -51.93 -0.38 1.07 16 34 H 0.14 2.02 8.02 -52.49 -0.42 1.60 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.22 4.62 2.99 -52.49 -0.16 4.47 16 39 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.14 2.32 7.92 -52.49 -0.42 1.91 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.13 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -27.67 360.92 -8.43 -36.10 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -4.50 Total: 9.96 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -3.55 Total: -1.95 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.16 Total: -40.73 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.95 Total: -22.49 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.67 -8.43 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.487 kcal (2) G-P(sol) polarization free energy of solvation -27.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds