Wall clock time and date at job start Sat Apr 11 2020 05:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48504 * 109.47098 * 239.99593 * 3 2 1 5 5 H 1.48496 * 109.47387 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47183 * 120.00183 * 3 2 1 7 7 C 1.37877 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00341 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99709 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.46497 * 119.99960 * 278.11172 * 10 9 7 12 12 C 1.50709 * 109.47023 * 270.00111 * 11 10 9 13 13 C 1.38681 * 120.41536 * 269.72147 * 12 11 10 14 14 C 1.38627 * 118.41546 * 179.78085 * 13 12 11 15 15 C 1.38225 * 119.16093 * 0.51988 * 14 13 12 16 16 N 1.31845 * 120.76638 * 359.71880 * 15 14 13 17 17 C 1.31891 * 121.72869 * 0.02562 * 16 15 14 18 18 C 1.34769 * 120.00004 * 98.10989 * 10 9 7 19 19 O 1.21588 * 120.00555 * 186.14811 * 18 10 9 20 20 C 1.47614 * 119.99922 * 6.15354 * 18 10 9 21 21 C 1.39699 * 120.08132 * 330.25616 * 20 18 10 22 22 C 1.37767 * 120.00114 * 179.74936 * 21 20 18 23 23 C 1.38856 * 120.21962 * 0.45260 * 22 21 20 24 24 C 1.39539 * 120.05431 * 359.55350 * 23 22 21 25 25 C 1.38122 * 119.98417 * 0.22065 * 24 23 22 26 26 O 1.36541 * 108.59514 * 180.24128 * 24 23 22 27 27 C 1.43980 * 105.44473 * 342.68956 * 26 24 23 28 28 O 1.36359 * 131.34966 * 179.86409 * 23 22 21 29 29 H 0.97004 * 120.00012 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47114 * 59.99810 * 9 7 2 31 31 H 1.08993 * 109.47381 * 299.99407 * 9 7 2 32 32 H 1.08998 * 109.47618 * 29.99621 * 11 10 9 33 33 H 1.09000 * 109.47347 * 150.00391 * 11 10 9 34 34 H 1.07992 * 120.78960 * 0.02562 * 13 12 11 35 35 H 1.08005 * 120.41417 * 180.21866 * 14 13 12 36 36 H 1.08004 * 119.61478 * 179.74687 * 15 14 13 37 37 H 1.07995 * 119.61829 * 180.02562 * 17 16 15 38 38 H 1.08001 * 119.99519 * 359.97438 * 21 20 18 39 39 H 1.08001 * 119.88310 * 180.30352 * 22 21 20 40 40 H 1.07998 * 120.04847 * 180.02562 * 25 24 23 41 41 H 1.08998 * 110.56606 * 268.61175 * 27 26 24 42 42 H 1.09004 * 110.56395 * 145.76348 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.8151 -4.0530 -1.2555 12 6 1.9558 -5.1182 -1.8867 13 6 2.1682 -6.4568 -1.5932 14 6 1.3505 -7.4016 -2.1936 15 6 0.3648 -6.9817 -3.0670 16 7 0.1948 -5.7002 -3.3265 17 6 0.9505 -4.7736 -2.7698 18 6 2.5158 -4.2318 1.1560 19 8 3.3871 -5.0797 1.1750 20 6 1.8005 -3.8807 2.3986 21 6 1.2954 -2.5902 2.5750 22 6 0.6236 -2.2658 3.7332 23 6 0.4541 -3.2152 4.7322 24 6 0.9564 -4.5059 4.5621 25 6 1.6268 -4.8383 3.4011 26 8 0.6564 -5.2398 5.6737 27 6 0.3276 -4.2765 6.6920 28 8 -0.1587 -3.1438 5.9482 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.9004 -3.2052 -1.9351 33 1 3.8067 -4.4584 -1.0540 34 1 2.9493 -6.7558 -0.9100 35 1 1.4851 -8.4528 -1.9853 36 1 -0.2737 -7.7118 -3.5421 37 1 0.7812 -3.7336 -3.0064 38 1 1.4284 -1.8480 1.8018 39 1 0.2296 -1.2689 3.8654 40 1 2.0156 -5.8370 3.2682 41 1 1.2150 -4.0064 7.2644 42 1 -0.4499 -4.6650 7.3498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060625025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:50 Heat of formation + Delta-G solvation = -18.257904 kcal Electronic energy + Delta-G solvation = -29313.647012 eV Core-core repulsion = 25225.535762 eV Total energy + Delta-G solvation = -4088.111250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.20993 -41.53009 -40.70072 -38.33501 -37.36504 -37.09433 -34.91349 -33.64019 -32.68414 -31.79123 -31.11929 -29.42375 -27.74343 -26.64621 -25.25070 -24.55272 -24.24131 -23.86924 -22.96489 -20.83595 -19.40451 -18.77603 -18.62419 -18.37390 -17.92054 -17.57452 -17.32782 -16.84478 -16.71391 -16.49961 -16.11638 -15.56508 -15.47716 -15.26571 -14.93010 -14.74954 -14.60255 -14.32798 -14.26684 -14.11736 -14.03253 -13.93870 -13.68536 -13.21129 -12.91429 -12.74889 -12.61130 -12.46953 -12.11780 -11.93116 -11.75862 -11.44077 -11.02361 -10.72850 -10.55112 -10.44925 -9.99904 -9.94662 -9.52839 -9.09776 -8.20542 -6.36671 -0.29020 0.12284 0.17370 0.33925 1.47474 1.50165 1.54000 1.56724 1.85286 2.18484 2.41845 2.52771 2.66355 2.95936 3.08799 3.35410 3.55183 3.60971 3.80208 3.89632 3.94020 4.03786 4.06326 4.10313 4.11767 4.21547 4.33928 4.48461 4.51333 4.68584 4.77047 4.84240 4.87593 4.91545 4.94099 5.12116 5.19707 5.25824 5.32327 5.38339 5.50946 5.66045 5.75186 5.78856 5.99956 6.04743 6.48077 6.78050 7.02271 7.18142 7.36013 8.82957 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.007388 B = 0.005124 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3789.062458 B = 5463.026998 C = 8290.193134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.220 3.780 10 N -0.582 5.582 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.067 4.067 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.102 3.898 18 C 0.563 3.437 19 O -0.579 6.579 20 C -0.144 4.144 21 C -0.088 4.088 22 C -0.118 4.118 23 C 0.054 3.946 24 C 0.004 3.996 25 C -0.050 4.050 26 O -0.319 6.319 27 C 0.202 3.798 28 O -0.317 6.317 29 H 0.271 0.729 30 H 0.019 0.981 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.151 0.849 38 H 0.197 0.803 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.853 -9.495 5.351 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.166 4.166 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.080 0.920 9 C 0.100 3.900 10 N -0.310 5.310 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.093 4.093 14 C -0.189 4.189 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.054 4.054 18 C 0.352 3.648 19 O -0.462 6.462 20 C -0.147 4.147 21 C -0.106 4.106 22 C -0.137 4.137 23 C 0.009 3.991 24 C -0.040 4.040 25 C -0.070 4.070 26 O -0.236 6.236 27 C 0.092 3.908 28 O -0.234 6.234 29 H 0.081 0.919 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.184 0.816 36 H 0.202 0.798 37 H 0.168 0.832 38 H 0.213 0.787 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.124 0.876 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.300 -9.611 4.898 10.791 hybrid contribution 0.832 0.883 0.693 1.398 sum 1.133 -8.727 5.590 10.426 Atomic orbital electron populations 1.70002 1.07031 1.28607 1.48435 1.25547 0.95406 1.01831 0.93838 0.85734 0.78574 0.79199 0.79041 1.19793 1.20897 1.19505 1.21498 0.93758 0.90832 1.52759 0.92046 1.20079 0.88152 0.82635 0.99099 1.48028 1.44115 1.33133 1.05686 1.20224 0.95212 0.95785 0.84930 1.21275 0.99463 0.96049 0.99158 1.21788 0.98525 0.92311 0.96689 1.22467 0.96374 1.02010 0.98010 1.23337 0.96109 0.92442 0.94902 1.67715 1.26482 1.02988 1.24818 1.22745 0.90636 0.99284 0.92781 1.18157 0.82223 0.80638 0.83735 1.90645 1.33265 1.35572 1.86718 1.19585 1.04604 0.95182 0.95378 1.23162 0.92193 0.97857 0.97366 1.20250 1.02576 0.99189 0.91667 1.20205 0.95629 0.94571 0.88720 1.19444 1.03154 0.89617 0.91800 1.19918 0.96789 1.00578 0.89687 1.87326 1.84733 1.31757 1.19741 1.26224 1.01943 0.74426 0.88194 1.87300 1.63707 1.48953 1.23391 0.91946 0.96251 0.92143 0.88596 0.89276 0.84552 0.81619 0.79771 0.83212 0.78653 0.83588 0.83872 0.87563 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.54 13.29 21.45 0.28 -45.25 16 2 C 0.04 1.77 5.33 84.65 0.45 2.22 16 3 Si 0.95 38.63 29.54 68.60 2.03 40.65 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -25.94 7.46 25.60 0.19 -25.74 16 8 H 0.06 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.22 9.84 4.64 85.63 0.40 10.24 16 10 N -0.58 -23.45 2.45 -834.18 -2.04 -25.49 16 11 C 0.16 5.66 5.61 85.64 0.48 6.14 16 12 C -0.16 -5.10 5.48 -19.77 -0.11 -5.21 16 13 C -0.07 -1.94 9.86 22.47 0.22 -1.71 16 14 C -0.17 -4.00 10.11 22.36 0.23 -3.78 16 15 C 0.09 2.24 11.18 84.69 0.95 3.18 16 16 N -0.51 -16.30 10.36 -195.85 -2.03 -18.33 16 17 C 0.10 3.41 10.86 84.67 0.92 4.33 16 18 C 0.56 23.19 7.45 86.72 0.65 23.84 16 19 O -0.58 -24.71 16.21 -3.99 -0.06 -24.78 16 20 C -0.14 -5.68 5.58 -20.09 -0.11 -5.79 16 21 C -0.09 -3.52 7.47 22.51 0.17 -3.36 16 22 C -0.12 -4.24 10.04 22.31 0.22 -4.02 16 23 C 0.05 1.80 7.16 22.73 0.16 1.96 16 24 C 0.00 0.13 7.14 22.56 0.16 0.29 16 25 C -0.05 -1.78 9.60 22.60 0.22 -1.57 16 26 O -0.32 -8.97 11.41 -76.54 -0.87 -9.85 16 27 C 0.20 4.06 8.88 113.37 1.01 5.07 16 28 O -0.32 -9.00 11.39 -74.41 -0.85 -9.85 16 29 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 30 H 0.02 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.06 2.84 4.08 -2.43 -0.01 2.83 16 32 H 0.10 3.28 8.02 -2.39 -0.02 3.26 16 33 H 0.09 3.05 7.30 -2.39 -0.02 3.03 16 34 H 0.14 3.95 8.02 -2.91 -0.02 3.93 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.15 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.20 8.69 2.99 -2.91 -0.01 8.68 16 39 H 0.15 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.14 4.80 7.92 -2.91 -0.02 4.78 16 41 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.17 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -59.75 360.92 3.73 -56.03 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 1.07 Total: 30.77 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 6.20 Total: 6.10 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -3.79 Total: -89.07 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.79 Total: -44.48 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -59.75 3.73 -56.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060625025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.768 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds