Wall clock time and date at job start Sat Apr 11 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46925 * 2 1 4 4 N 1.46491 * 109.47616 * 120.00170 * 2 1 3 5 5 C 1.46500 * 119.99989 * 300.00104 * 4 2 1 6 6 C 1.50699 * 109.47281 * 269.99637 * 5 4 2 7 7 H 1.07993 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99884 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00285 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46935 * 120.00138 * 10 8 6 13 13 H 1.48503 * 109.47411 * 240.00309 * 10 8 6 14 14 C 1.34773 * 120.00261 * 119.99882 * 4 2 1 15 15 O 1.21281 * 120.00273 * 180.02562 * 14 4 2 16 16 C 1.50701 * 119.99780 * 0.02562 * 14 4 2 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 4 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.09003 * 109.46881 * 299.99867 * 1 2 3 29 29 H 1.08999 * 109.46945 * 59.99606 * 1 2 3 30 30 H 1.09000 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47123 * 240.00810 * 2 1 3 32 32 H 1.08996 * 109.46995 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47175 * 300.00252 * 3 2 1 34 34 H 1.08997 * 109.46558 * 60.00465 * 3 2 1 35 35 H 1.09002 * 109.47449 * 30.00365 * 5 4 2 36 36 H 1.09007 * 109.46960 * 149.99554 * 5 4 2 37 37 H 0.97000 * 119.99869 * 179.97438 * 9 8 6 38 38 H 1.08995 * 109.46913 * 59.99851 * 16 14 4 39 39 H 1.08999 * 109.47186 * 300.00025 * 16 14 4 40 40 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 42 42 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 1.6646 -0.1901 2.5267 6 6 2.7033 0.8018 2.9829 7 1 3.5433 1.0356 2.3457 8 6 2.5813 1.4107 4.2139 9 7 1.5587 1.1255 4.9902 10 14 3.8692 2.6396 4.7798 11 1 4.9106 2.7836 3.7309 12 1 3.2252 3.9557 5.0212 13 1 4.4956 2.1570 6.0368 14 6 2.7933 -1.7863 1.0724 15 8 3.1973 -2.3583 2.0626 16 6 3.1578 -2.3008 -0.2964 17 8 3.9788 -3.4631 -0.1654 18 6 4.3974 -4.0555 -1.3146 19 6 5.1979 -5.1877 -1.2609 20 6 5.6233 -5.7888 -2.4296 21 6 5.2571 -5.2605 -3.6536 22 7 5.7195 -5.9031 -4.9042 23 8 6.4227 -6.8964 -4.8546 24 8 5.3969 -5.4386 -5.9829 25 6 4.4541 -4.1338 -3.7111 26 9 4.0932 -3.6218 -4.9081 27 6 4.0258 -3.5289 -2.5424 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6905 0.2972 2.4844 36 1 1.6240 -1.0228 3.2290 37 1 1.4731 1.5536 5.8564 38 1 3.7029 -1.5299 -0.8410 39 1 2.2496 -2.5576 -0.8418 40 1 5.4883 -5.5990 -0.3054 41 1 6.2467 -6.6697 -2.3871 42 1 3.4026 -2.6480 -2.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067014618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:54 Heat of formation + Delta-G solvation = -87.997258 kcal Electronic energy + Delta-G solvation = -29272.935400 eV Core-core repulsion = 24751.030800 eV Total energy + Delta-G solvation = -4521.904600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.75470 -42.35737 -40.96836 -39.41346 -37.87426 -36.76187 -36.17969 -33.01001 -31.81264 -31.71459 -31.11828 -29.51678 -27.15602 -26.88136 -26.16101 -23.96301 -23.05681 -22.62139 -21.58723 -19.83764 -19.20625 -19.06100 -18.53388 -17.88464 -17.31237 -17.06560 -16.88766 -16.52244 -16.34248 -16.13248 -15.46070 -15.08060 -14.72350 -14.43450 -14.37618 -14.05814 -13.72459 -13.42737 -13.19857 -12.90125 -12.63846 -12.41208 -12.24134 -11.86851 -11.81162 -11.76472 -11.62689 -11.41562 -11.36367 -11.35430 -11.11436 -11.00711 -10.75042 -10.58532 -10.17987 -9.89562 -9.70126 -9.31424 -9.24385 -8.54808 -7.94032 -6.16487 -4.20612 -0.52669 0.22474 0.95170 1.04722 2.21871 2.61099 2.97605 3.11044 3.21295 3.30123 3.32594 3.62292 3.69918 3.99698 4.06767 4.33263 4.46136 4.61506 4.65103 4.78266 4.80656 4.96180 5.04915 5.06303 5.18596 5.31228 5.32958 5.38844 5.56694 5.80872 5.92894 6.03380 6.07669 6.17380 6.38400 6.49741 6.77120 6.88247 7.24918 7.32554 7.37506 7.79073 8.07858 8.10586 8.64534 8.84533 9.44082 10.91813 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002398 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.361857 B =11674.586188 C =12257.002149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 C -0.159 4.159 4 N -0.585 5.585 5 C 0.247 3.753 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.514 6.514 16 C 0.028 3.972 17 O -0.262 6.262 18 C 0.223 3.777 19 C -0.158 4.158 20 C 0.011 3.989 21 C -0.133 4.133 22 N 0.039 4.961 23 O -0.163 6.163 24 O -0.158 6.158 25 C 0.218 3.782 26 F -0.099 7.099 27 C -0.259 4.259 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 -8.330 -16.466 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 C -0.217 4.217 4 N -0.319 5.319 5 C 0.129 3.871 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.390 6.390 16 C -0.050 4.050 17 O -0.171 6.171 18 C 0.173 3.827 19 C -0.177 4.177 20 C -0.008 4.008 21 C -0.218 4.218 22 N 0.557 4.443 23 O -0.377 6.377 24 O -0.374 6.374 25 C 0.197 3.803 26 F -0.077 7.077 27 C -0.279 4.279 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.984 -8.291 -14.966 17.224 hybrid contribution 0.568 0.940 -0.388 1.165 sum 2.552 -7.351 -15.354 17.213 Atomic orbital electron populations 1.22174 0.95006 1.02031 1.02941 1.21079 0.94670 0.94533 0.87140 1.22159 1.01446 0.95285 1.02784 1.48321 1.48583 1.25592 1.09364 1.19350 0.96222 0.95181 0.76379 1.21419 1.08958 1.23581 1.02296 0.92242 1.24925 0.95770 0.97095 0.96279 1.69929 1.29420 1.43139 1.10699 0.86472 0.81539 0.80739 0.78855 1.19811 1.20948 1.20859 1.19487 0.80651 0.82001 0.88720 1.90754 1.52192 1.57430 1.38590 1.23069 0.95176 0.86591 1.00143 1.86324 1.63155 1.41154 1.26472 1.19204 0.88441 0.90118 0.84952 1.20578 1.01463 0.95902 0.99806 1.20763 0.94000 0.98144 0.87847 1.21077 1.12848 1.01574 0.86328 1.43232 0.98857 1.00021 1.02184 1.94534 1.34376 1.14866 1.93941 1.94607 1.60353 1.66530 1.15863 1.16936 0.91797 0.89553 0.82011 1.91684 1.88706 1.85276 1.42001 1.21316 1.10313 1.06303 0.89929 0.90913 0.91934 0.92789 0.91356 0.92620 0.92924 0.89669 0.94254 0.93796 0.92677 0.88484 0.88634 0.81628 0.81232 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.17 37.16 0.34 -1.65 16 2 C 0.13 1.75 3.17 -67.93 -0.22 1.54 16 3 C -0.16 -2.24 8.47 37.16 0.31 -1.92 16 4 N -0.58 -10.72 2.39 -167.47 -0.40 -11.12 16 5 C 0.25 5.81 4.59 -5.19 -0.02 5.79 16 6 C -0.52 -13.54 7.83 -34.44 -0.27 -13.81 16 7 H 0.06 1.54 7.63 -52.49 -0.40 1.14 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 10 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.51 9.26 7.75 -10.99 -0.09 9.17 16 15 O -0.51 -12.00 16.08 -14.35 -0.23 -12.23 16 16 C 0.03 0.34 3.53 36.01 0.13 0.47 16 17 O -0.26 -3.30 9.67 -39.32 -0.38 -3.68 16 18 C 0.22 2.13 6.69 -39.23 -0.26 1.86 16 19 C -0.16 -1.25 9.99 -39.42 -0.39 -1.65 16 20 C 0.01 0.09 9.55 -39.61 -0.38 -0.29 16 21 C -0.13 -1.35 6.86 -79.85 -0.55 -1.89 16 22 N 0.04 0.49 4.45 34.01 0.15 0.64 16 23 O -0.16 -2.03 18.44 -29.46 -0.54 -2.57 16 24 O -0.16 -2.17 17.42 -29.46 -0.51 -2.69 16 25 C 0.22 2.13 7.25 -39.44 -0.29 1.85 16 26 F -0.10 -1.07 15.47 2.25 0.03 -1.03 16 27 C -0.26 -2.18 9.02 -39.36 -0.35 -2.54 16 28 H 0.07 1.05 6.66 -51.93 -0.35 0.71 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.67 5.77 -51.93 -0.30 0.38 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.47 6.92 -51.93 -0.36 1.11 16 35 H 0.04 0.93 6.43 -51.93 -0.33 0.60 16 36 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.10 0.92 7.31 -51.93 -0.38 0.54 16 39 H 0.10 0.83 7.30 -51.93 -0.38 0.45 16 40 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.17 0.94 7.61 -52.49 -0.40 0.54 16 42 H 0.17 1.04 6.30 -52.49 -0.33 0.71 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -32.53 365.66 -7.65 -40.18 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.86 Total: -2.87 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.13 Total: -1.53 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.49 Total: -34.85 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -1.67 Total: -21.17 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.03 Total: -1.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.53 -7.65 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067014618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.817 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds