Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46925 * 2 1 4 4 N 1.46491 * 109.47616 * 120.00170 * 2 1 3 5 5 C 1.46500 * 119.99989 * 300.00104 * 4 2 1 6 6 C 1.50699 * 109.47281 * 269.99637 * 5 4 2 7 7 H 1.07993 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99884 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00285 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99696 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47187 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46935 * 120.00138 * 10 8 6 13 13 H 1.48503 * 109.47411 * 240.00309 * 10 8 6 14 14 C 1.34773 * 120.00261 * 119.99882 * 4 2 1 15 15 O 1.21281 * 120.00273 * 180.02562 * 14 4 2 16 16 C 1.50701 * 119.99780 * 0.02562 * 14 4 2 17 17 O 1.42904 * 109.47261 * 180.02562 * 16 14 4 18 18 C 1.35895 * 117.00202 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.04251 * 179.97438 * 18 17 16 20 20 C 1.38142 * 119.99431 * 180.02562 * 19 18 17 21 21 C 1.38251 * 120.07778 * 0.26239 * 20 19 18 22 22 N 1.48019 * 119.95459 * 179.72171 * 21 20 19 23 23 O 1.21796 * 120.00027 * 359.97438 * 22 21 20 24 24 O 1.21799 * 119.99663 * 179.97438 * 22 21 20 25 25 C 1.38473 * 120.08702 * 359.48449 * 21 20 19 26 26 F 1.35095 * 120.00135 * 180.23634 * 25 21 20 27 27 C 1.38388 * 120.00405 * 0.51149 * 25 21 20 28 28 H 1.09003 * 109.46881 * 299.99867 * 1 2 3 29 29 H 1.08999 * 109.46945 * 59.99606 * 1 2 3 30 30 H 1.09000 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47123 * 240.00810 * 2 1 3 32 32 H 1.08996 * 109.46995 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47175 * 300.00252 * 3 2 1 34 34 H 1.08997 * 109.46558 * 60.00465 * 3 2 1 35 35 H 1.09002 * 109.47449 * 30.00365 * 5 4 2 36 36 H 1.09007 * 109.46960 * 149.99554 * 5 4 2 37 37 H 0.97000 * 119.99869 * 179.97438 * 9 8 6 38 38 H 1.08995 * 109.46913 * 59.99851 * 16 14 4 39 39 H 1.08999 * 109.47186 * 300.00025 * 16 14 4 40 40 H 1.07999 * 120.00841 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.95749 * 179.97438 * 20 19 18 42 42 H 1.07994 * 120.04338 * 179.77075 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 1.6646 -0.1901 2.5267 6 6 2.7033 0.8018 2.9829 7 1 3.5433 1.0356 2.3457 8 6 2.5813 1.4107 4.2139 9 7 1.5587 1.1255 4.9902 10 14 3.8692 2.6396 4.7798 11 1 4.9106 2.7836 3.7309 12 1 3.2252 3.9557 5.0212 13 1 4.4956 2.1570 6.0368 14 6 2.7933 -1.7863 1.0724 15 8 3.1973 -2.3583 2.0626 16 6 3.1578 -2.3008 -0.2964 17 8 3.9788 -3.4631 -0.1654 18 6 4.3974 -4.0555 -1.3146 19 6 5.1979 -5.1877 -1.2609 20 6 5.6233 -5.7888 -2.4296 21 6 5.2571 -5.2605 -3.6536 22 7 5.7195 -5.9031 -4.9042 23 8 6.4227 -6.8964 -4.8546 24 8 5.3969 -5.4386 -5.9829 25 6 4.4541 -4.1338 -3.7111 26 9 4.0932 -3.6218 -4.9081 27 6 4.0258 -3.5289 -2.5424 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.6905 0.2972 2.4844 36 1 1.6240 -1.0228 3.2290 37 1 1.4731 1.5536 5.8564 38 1 3.7029 -1.5299 -0.8410 39 1 2.2496 -2.5576 -0.8418 40 1 5.4883 -5.5990 -0.3054 41 1 6.2467 -6.6697 -2.3871 42 1 3.4026 -2.6480 -2.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067014618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -106.606767 kcal Electronic energy + Delta-G solvation = -29273.742369 eV Core-core repulsion = 24751.030800 eV Total energy + Delta-G solvation = -4522.711569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.50135 -43.24121 -41.84688 -40.67026 -38.74662 -37.69098 -37.57363 -34.95978 -32.61146 -32.50228 -32.38835 -30.80930 -28.62456 -27.95721 -27.13219 -25.11308 -24.29536 -23.57112 -22.78329 -20.62375 -20.24115 -19.91569 -19.65050 -18.75994 -18.63760 -18.29204 -18.07061 -17.64799 -17.19614 -16.96500 -16.93122 -16.27950 -15.73956 -15.71781 -15.30052 -14.98244 -14.88028 -14.60170 -14.40869 -14.00358 -13.72700 -13.65930 -13.36652 -13.23637 -12.92702 -12.79981 -12.77362 -12.76521 -12.53315 -12.46793 -12.33534 -12.32908 -12.23594 -12.10795 -11.70308 -11.52906 -10.71019 -10.62194 -10.54043 -10.05713 -9.52249 -8.21161 -6.32238 -1.36170 -0.40521 0.10922 0.23446 1.29297 1.35899 1.38878 1.48920 1.63295 1.94163 2.33303 2.40853 2.49909 2.97813 3.09996 3.30983 3.38186 3.42866 3.78892 3.94912 3.97165 4.03327 4.11467 4.26713 4.36414 4.36844 4.43328 4.72625 4.80690 4.87969 4.91482 4.99259 5.05563 5.11714 5.19664 5.22328 5.44148 5.56630 5.61890 5.74745 5.85845 6.08173 6.40867 6.65377 6.77078 7.24276 7.40108 8.86562 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019448 B = 0.002398 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.361857 B =11674.586188 C =12257.002149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.122 3.878 3 C -0.156 4.156 4 N -0.589 5.589 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.265 1.265 12 H -0.273 1.273 13 H -0.286 1.286 14 C 0.496 3.504 15 O -0.581 6.581 16 C 0.038 3.962 17 O -0.288 6.288 18 C 0.216 3.784 19 C -0.151 4.151 20 C 0.023 3.977 21 C -0.142 4.142 22 N 0.040 4.960 23 O -0.159 6.159 24 O -0.199 6.199 25 C 0.208 3.792 26 F -0.107 7.107 27 C -0.242 4.242 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.032 0.968 36 H -0.006 1.006 37 H 0.265 0.735 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.181 0.819 41 H 0.192 0.808 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.633 -8.017 -18.664 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.020 3.980 3 C -0.214 4.214 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.192 4.192 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.190 1.190 12 H -0.199 1.199 13 H -0.213 1.213 14 C 0.283 3.717 15 O -0.460 6.460 16 C -0.039 4.039 17 O -0.198 6.198 18 C 0.167 3.833 19 C -0.170 4.170 20 C 0.004 3.996 21 C -0.228 4.228 22 N 0.553 4.447 23 O -0.377 6.377 24 O -0.406 6.406 25 C 0.187 3.813 26 F -0.085 7.085 27 C -0.262 4.262 28 H 0.057 0.943 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.013 0.987 37 H 0.074 0.926 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.198 0.802 41 H 0.209 0.791 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 2.512 -7.929 -17.282 19.180 hybrid contribution 0.394 0.772 0.334 0.928 sum 2.906 -7.157 -16.949 18.626 Atomic orbital electron populations 1.22156 0.94046 1.02563 1.03020 1.21541 0.95538 0.94297 0.86663 1.22117 1.00869 0.95720 1.02684 1.48306 1.48719 1.26206 1.08940 1.18719 0.95501 0.92766 0.78760 1.21675 1.08987 1.23409 1.02223 0.92500 1.25766 0.97688 0.99082 0.96647 1.70046 1.31248 1.44554 1.11136 0.85497 0.79220 0.78781 0.78114 1.18965 1.19861 1.21264 1.20602 0.79160 0.81035 0.90905 1.90718 1.54481 1.59267 1.41581 1.23011 0.97649 0.87628 0.95570 1.86287 1.63814 1.41586 1.28138 1.19316 0.89003 0.90531 0.84443 1.20790 1.00555 0.95296 1.00408 1.20985 0.93488 0.98410 0.86681 1.21321 1.13628 1.02091 0.85782 1.43533 0.98542 0.99894 1.02759 1.94506 1.34087 1.14979 1.94133 1.94607 1.61721 1.67228 1.16997 1.17083 0.92279 0.89751 0.82191 1.91666 1.88846 1.85389 1.42605 1.21464 1.09574 1.06513 0.88635 0.94311 0.88319 0.92067 0.86044 0.93441 0.88998 0.93762 0.95059 0.98741 0.92643 0.85032 0.84362 0.80186 0.79057 0.79043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.17 71.98 0.66 -2.84 16 2 C 0.12 2.92 3.17 45.00 0.14 3.06 16 3 C -0.16 -4.03 8.47 71.99 0.61 -3.42 16 4 N -0.59 -21.33 2.39 -802.14 -1.91 -23.25 16 5 C 0.26 12.97 4.59 85.63 0.39 13.36 16 6 C -0.52 -27.90 7.83 25.60 0.20 -27.70 16 7 H 0.06 2.98 7.63 -2.91 -0.02 2.96 16 8 C 0.01 0.37 5.46 84.65 0.46 0.84 16 9 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 10 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.50 17.66 7.75 87.66 0.68 18.34 16 15 O -0.58 -27.90 16.08 16.00 0.26 -27.65 16 16 C 0.04 0.77 3.53 71.24 0.25 1.02 16 17 O -0.29 -6.44 9.67 -73.33 -0.71 -7.15 16 18 C 0.22 3.38 6.69 22.50 0.15 3.53 16 19 C -0.15 -1.94 9.99 22.37 0.22 -1.72 16 20 C 0.02 0.29 9.55 22.25 0.21 0.50 16 21 C -0.14 -2.58 6.86 36.43 0.25 -2.33 16 22 N 0.04 0.94 4.45 -46.32 -0.21 0.73 16 23 O -0.16 -3.75 18.44 18.89 0.35 -3.40 16 24 O -0.20 -5.41 17.42 18.89 0.33 -5.09 16 25 C 0.21 3.51 7.25 22.36 0.16 3.67 16 26 F -0.11 -2.10 15.47 44.97 0.70 -1.40 16 27 C -0.24 -3.10 9.02 22.41 0.20 -2.90 16 28 H 0.04 1.11 6.66 -2.39 -0.02 1.09 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.12 1.67 5.77 -2.39 -0.01 1.65 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 35 H 0.03 1.58 6.43 -2.39 -0.02 1.56 16 36 H -0.01 -0.32 7.42 -2.38 -0.02 -0.34 16 37 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.13 1.75 7.31 -2.39 -0.02 1.73 16 39 H 0.14 1.59 7.30 -2.39 -0.02 1.57 16 40 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.19 1.53 7.61 -2.91 -0.02 1.51 16 42 H 0.19 1.30 6.30 -2.91 -0.02 1.28 16 Total: -1.00 -77.77 365.66 6.78 -70.98 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.07 Total: 1.44 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 4.60 Total: 3.41 kcal Atomic # 7 Polarization: -74.58 SS G_CDS: -1.84 Total: -76.41 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: 0.23 Total: -43.28 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.70 Total: -1.40 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -77.77 6.78 -70.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067014618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.623 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds