Wall clock time and date at job start Sat Apr 11 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47343 * 270.00605 * 3 2 1 5 5 H 1.48498 * 109.46849 * 30.00699 * 3 2 1 6 6 H 1.48504 * 109.46999 * 150.00432 * 3 2 1 7 7 C 1.38649 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00306 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00313 * 185.05888 * 9 7 2 11 11 C 1.38899 * 120.07111 * 354.48613 * 10 9 7 12 12 C 1.38071 * 119.93053 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.07100 * 359.75371 * 12 11 10 14 14 C 1.38272 * 120.13952 * 0.50102 * 13 12 11 15 15 C 1.50700 * 119.96758 * 179.77144 * 14 13 12 16 16 C 1.50698 * 109.46831 * 269.72183 * 15 14 13 17 17 O 1.21279 * 120.00292 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.40098 * 119.99950 * 180.02562 * 18 16 15 20 20 C 1.34781 * 119.99950 * 180.02562 * 19 18 16 21 21 O 1.21551 * 119.99752 * 0.27799 * 20 19 18 22 22 C 1.47848 * 120.00029 * 179.97438 * 20 19 18 23 23 C 1.39578 * 120.13982 * 359.72471 * 22 20 19 24 24 C 1.37962 * 119.84685 * 179.74582 * 23 22 20 25 25 C 1.38361 * 120.14443 * 0.53155 * 24 23 22 26 26 C 1.38357 * 120.29231 * 359.74332 * 25 24 23 27 27 C 1.37954 * 120.14708 * 359.97438 * 26 25 24 28 28 C 1.38124 * 120.06740 * 359.49626 * 14 13 12 29 29 H 0.97006 * 120.00030 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03038 * 359.96051 * 11 10 9 31 31 H 1.08004 * 119.96352 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.92958 * 180.27273 * 13 12 11 33 33 H 1.09003 * 109.46999 * 149.72438 * 15 14 13 34 34 H 1.08998 * 109.47178 * 29.72447 * 15 14 13 35 35 H 0.97002 * 119.99680 * 0.02562 * 18 16 15 36 36 H 0.97002 * 120.00369 * 0.02562 * 19 18 16 37 37 H 1.07997 * 120.07798 * 359.97438 * 23 22 20 38 38 H 1.07999 * 119.92724 * 180.27777 * 24 23 22 39 39 H 1.08006 * 119.85515 * 179.72156 * 25 24 23 40 40 H 1.08007 * 119.92735 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.07660 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.03713 * 180.23610 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1056 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5967 0.2012 13 6 3.5688 -5.8197 0.3281 14 6 2.1878 -5.8885 0.3360 15 6 1.5014 -7.2235 0.4692 16 6 1.2653 -7.8057 -0.9005 17 8 1.6199 -7.1969 -1.8877 18 7 0.6609 -9.0036 -1.0286 19 7 0.4419 -9.5451 -2.3019 20 6 -0.1630 -10.7428 -2.4300 21 8 -0.5230 -11.3506 -1.4409 22 6 -0.3946 -11.3140 -3.7738 23 6 0.0067 -10.6130 -4.9121 24 6 -0.2077 -11.1541 -6.1629 25 6 -0.8289 -12.3838 -6.2908 26 6 -1.2343 -13.0812 -5.1667 27 6 -1.0207 -12.5540 -3.9099 28 6 1.4368 -4.7343 0.2278 29 1 -0.4850 0.8401 0.0004 30 1 3.9529 -2.4845 -0.0026 31 1 5.2814 -4.5467 0.1908 32 1 4.1539 -6.7232 0.4173 33 1 0.5462 -7.0917 0.9776 34 1 2.1308 -7.8995 1.0479 35 1 0.3776 -9.4907 -0.2390 36 1 0.7255 -9.0582 -3.0915 37 1 0.4873 -9.6508 -4.8138 38 1 0.1064 -10.6148 -7.0443 39 1 -0.9985 -12.8010 -7.2725 40 1 -1.7190 -14.0404 -5.2734 41 1 -1.3379 -13.0992 -3.0332 42 1 0.3582 -4.7883 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089598784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:28 Heat of formation + Delta-G solvation = -9.222102 kcal Electronic energy + Delta-G solvation = -26919.555815 eV Core-core repulsion = 22831.836387 eV Total energy + Delta-G solvation = -4087.719428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.84945 -39.79253 -38.91873 -38.39637 -36.54500 -35.47555 -32.87199 -32.33600 -31.98336 -31.41410 -30.44985 -29.16197 -27.04031 -25.25236 -24.34504 -23.00541 -21.91307 -21.61626 -21.36632 -20.37633 -18.55469 -18.12685 -17.53382 -16.99058 -16.88821 -16.12119 -15.89169 -15.66777 -15.20324 -14.95100 -14.91638 -14.47729 -14.30802 -14.27972 -14.07919 -13.82311 -13.49966 -13.45948 -13.08636 -12.67532 -12.44873 -12.16202 -11.99454 -11.61418 -11.57929 -11.39728 -11.27922 -10.84749 -10.80847 -10.63198 -10.58697 -10.43719 -10.07074 -9.51735 -9.46640 -9.32889 -8.82255 -8.56163 -8.08897 -7.21536 -6.42446 -4.01553 0.35854 0.88847 1.50345 2.18103 2.27763 2.40397 2.63925 3.14319 3.14905 3.19806 3.41501 3.72765 3.98269 4.21157 4.33976 4.46090 4.53401 4.67249 4.80264 4.88303 4.99036 5.04172 5.10338 5.18121 5.29455 5.45388 5.50162 5.62620 5.73998 5.79889 5.88617 5.92954 5.96690 6.17295 6.33807 6.36734 6.40567 6.50314 6.66373 6.91524 7.08031 7.24822 7.29045 7.37344 7.44786 7.63116 7.82321 8.02383 8.18580 9.03233 9.73704 10.75704 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.001886 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.324517 B =14840.228705 C =15561.554844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.228 4.228 12 C -0.075 4.075 13 C -0.195 4.195 14 C -0.036 4.036 15 C -0.081 4.081 16 C 0.516 3.484 17 O -0.517 6.517 18 N -0.530 5.530 19 N -0.517 5.517 20 C 0.559 3.441 21 O -0.540 6.540 22 C -0.128 4.128 23 C -0.085 4.085 24 C -0.125 4.125 25 C -0.092 4.092 26 C -0.128 4.128 27 C -0.056 4.056 28 C -0.173 4.173 29 H 0.269 0.731 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.431 0.569 36 H 0.431 0.569 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -24.078 -7.726 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.100 3.900 11 C -0.247 4.247 12 C -0.093 4.093 13 C -0.214 4.214 14 C -0.037 4.037 15 C -0.122 4.122 16 C 0.303 3.697 17 O -0.389 6.389 18 N -0.281 5.281 19 N -0.264 5.264 20 C 0.347 3.653 21 O -0.417 6.417 22 C -0.132 4.132 23 C -0.104 4.104 24 C -0.143 4.143 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.075 4.075 28 C -0.192 4.192 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.273 0.727 36 H 0.275 0.725 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.138 -23.796 -7.746 25.025 hybrid contribution 0.523 0.876 -0.128 1.028 sum 0.385 -22.920 -7.873 24.238 Atomic orbital electron populations 1.70040 1.05938 1.27590 1.46301 1.25280 0.95845 0.98802 0.96639 0.85717 0.78905 0.80133 0.78690 1.19917 1.20283 1.19210 1.21315 0.91783 0.80828 1.52801 0.89101 1.83976 1.34234 1.11381 1.78655 1.19273 0.90251 0.87983 0.92455 1.21194 0.93835 0.99017 1.10688 1.20683 0.98431 0.92291 0.97906 1.20359 0.93219 0.97020 1.10807 1.18571 0.93228 0.91387 1.00532 1.20503 1.03341 0.95980 0.92384 1.21235 0.76744 0.78580 0.93157 1.90781 1.49494 1.59074 1.39577 1.45167 1.63400 1.20667 0.98905 1.44751 1.61237 1.19757 1.00667 1.18364 0.77688 0.79522 0.89741 1.90791 1.51596 1.60330 1.38946 1.19634 1.04941 0.97229 0.91423 1.21414 0.97521 0.99207 0.92236 1.21166 0.99566 0.96168 0.97369 1.21450 0.95919 0.94506 0.99108 1.21193 1.00802 1.00592 0.92026 1.21274 0.94449 0.93357 0.98413 1.19957 0.99125 0.89970 1.10166 0.92075 0.85567 0.87404 0.87812 0.87459 0.87605 0.72683 0.72525 0.85342 0.84999 0.85334 0.85049 0.84393 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -11.05 9.49 30.88 0.29 -10.76 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.18 9.76 0.06 0.00 -5.18 16 10 C 0.15 3.79 6.65 -39.10 -0.26 3.53 16 11 C -0.23 -5.06 9.17 -39.40 -0.36 -5.42 16 12 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.40 9.70 -39.54 -0.38 -3.79 16 14 C -0.04 -0.64 4.37 -104.65 -0.46 -1.10 16 15 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 16 C 0.52 7.13 7.94 -10.98 -0.09 7.04 16 17 O -0.52 -9.30 15.87 5.56 0.09 -9.21 16 18 N -0.53 -6.07 6.26 31.22 0.20 -5.87 16 19 N -0.52 -5.78 6.21 30.53 0.19 -5.60 16 20 C 0.56 6.32 7.89 -12.33 -0.10 6.23 16 21 O -0.54 -7.38 16.19 5.32 0.09 -7.29 16 22 C -0.13 -1.18 5.87 -104.97 -0.62 -1.79 16 23 C -0.08 -0.65 9.54 -39.18 -0.37 -1.02 16 24 C -0.12 -0.78 10.03 -39.64 -0.40 -1.18 16 25 C -0.09 -0.52 10.04 -39.49 -0.40 -0.91 16 26 C -0.13 -0.79 10.03 -39.64 -0.40 -1.18 16 27 C -0.06 -0.46 9.60 -39.19 -0.38 -0.83 16 28 C -0.17 -3.69 9.65 -39.39 -0.38 -4.07 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 31 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 32 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.43 4.13 8.00 -182.60 -1.46 2.67 16 36 H 0.43 4.50 6.04 -182.60 -1.10 3.40 16 37 H 0.13 0.83 6.41 -52.49 -0.34 0.49 16 38 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.14 1.10 7.65 -52.48 -0.40 0.70 16 42 H 0.11 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 371.91 15.07 5.60 5.60 Total: -1.00 -36.19 371.91 -9.44 -45.62 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.38 Total: 8.31 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -4.95 Total: -17.27 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 1.14 Total: -36.27 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.19 -9.44 -45.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089598784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.403 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds