Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86803 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47343 * 270.00605 * 3 2 1 5 5 H 1.48498 * 109.46849 * 30.00699 * 3 2 1 6 6 H 1.48504 * 109.46999 * 150.00432 * 3 2 1 7 7 C 1.38649 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00306 * 179.97438 * 7 2 1 9 9 O 1.34829 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00313 * 185.05888 * 9 7 2 11 11 C 1.38899 * 120.07111 * 354.48613 * 10 9 7 12 12 C 1.38071 * 119.93053 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.07100 * 359.75371 * 12 11 10 14 14 C 1.38272 * 120.13952 * 0.50102 * 13 12 11 15 15 C 1.50700 * 119.96758 * 179.77144 * 14 13 12 16 16 C 1.50698 * 109.46831 * 269.72183 * 15 14 13 17 17 O 1.21279 * 120.00292 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99853 * 179.97438 * 16 15 14 19 19 N 1.40098 * 119.99950 * 180.02562 * 18 16 15 20 20 C 1.34781 * 119.99950 * 180.02562 * 19 18 16 21 21 O 1.21551 * 119.99752 * 0.27799 * 20 19 18 22 22 C 1.47848 * 120.00029 * 179.97438 * 20 19 18 23 23 C 1.39578 * 120.13982 * 359.72471 * 22 20 19 24 24 C 1.37962 * 119.84685 * 179.74582 * 23 22 20 25 25 C 1.38361 * 120.14443 * 0.53155 * 24 23 22 26 26 C 1.38357 * 120.29231 * 359.74332 * 25 24 23 27 27 C 1.37954 * 120.14708 * 359.97438 * 26 25 24 28 28 C 1.38124 * 120.06740 * 359.49626 * 14 13 12 29 29 H 0.97006 * 120.00030 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03038 * 359.96051 * 11 10 9 31 31 H 1.08004 * 119.96352 * 179.97438 * 12 11 10 32 32 H 1.08007 * 119.92958 * 180.27273 * 13 12 11 33 33 H 1.09003 * 109.46999 * 149.72438 * 15 14 13 34 34 H 1.08998 * 109.47178 * 29.72447 * 15 14 13 35 35 H 0.97002 * 119.99680 * 0.02562 * 18 16 15 36 36 H 0.97002 * 120.00369 * 0.02562 * 19 18 16 37 37 H 1.07997 * 120.07798 * 359.97438 * 23 22 20 38 38 H 1.07999 * 119.92724 * 180.27777 * 24 23 22 39 39 H 1.08006 * 119.85515 * 179.72156 * 25 24 23 40 40 H 1.08007 * 119.92735 * 179.97438 * 26 25 24 41 41 H 1.08004 * 120.07660 * 179.97438 * 27 26 25 42 42 H 1.07999 * 120.03713 * 180.23610 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1056 11 6 3.4575 -3.4394 0.0926 12 6 4.2026 -4.5967 0.2012 13 6 3.5688 -5.8197 0.3281 14 6 2.1878 -5.8885 0.3360 15 6 1.5014 -7.2235 0.4692 16 6 1.2653 -7.8057 -0.9005 17 8 1.6199 -7.1969 -1.8877 18 7 0.6609 -9.0036 -1.0286 19 7 0.4419 -9.5451 -2.3019 20 6 -0.1630 -10.7428 -2.4300 21 8 -0.5230 -11.3506 -1.4409 22 6 -0.3946 -11.3140 -3.7738 23 6 0.0067 -10.6130 -4.9121 24 6 -0.2077 -11.1541 -6.1629 25 6 -0.8289 -12.3838 -6.2908 26 6 -1.2343 -13.0812 -5.1667 27 6 -1.0207 -12.5540 -3.9099 28 6 1.4368 -4.7343 0.2278 29 1 -0.4850 0.8401 0.0004 30 1 3.9529 -2.4845 -0.0026 31 1 5.2814 -4.5467 0.1908 32 1 4.1539 -6.7232 0.4173 33 1 0.5462 -7.0917 0.9776 34 1 2.1308 -7.8995 1.0479 35 1 0.3776 -9.4907 -0.2390 36 1 0.7255 -9.0582 -3.0915 37 1 0.4873 -9.6508 -4.8138 38 1 0.1064 -10.6148 -7.0443 39 1 -0.9985 -12.8010 -7.2725 40 1 -1.7190 -14.0404 -5.2734 41 1 -1.3379 -13.0992 -3.0332 42 1 0.3582 -4.7883 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089598784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -33.984684 kcal Electronic energy + Delta-G solvation = -26920.629601 eV Core-core repulsion = 22831.836387 eV Total energy + Delta-G solvation = -4088.793214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.76697 -40.96417 -40.34092 -39.23998 -38.21219 -36.52616 -34.35686 -33.88224 -33.10025 -31.94385 -31.36983 -30.78243 -28.37809 -27.23207 -25.08434 -23.61683 -23.29237 -22.97208 -22.43749 -21.57420 -19.59018 -19.34069 -19.02726 -18.58167 -17.81843 -16.99663 -16.84431 -16.69703 -16.39851 -16.33719 -16.10938 -15.74966 -15.55999 -15.52585 -15.24965 -14.90679 -14.83061 -14.37572 -14.34986 -14.01440 -13.68042 -13.59400 -12.98164 -12.96772 -12.67887 -12.49329 -12.48165 -12.41636 -12.21983 -12.10530 -12.07068 -11.54617 -11.23070 -11.17748 -10.80025 -10.09671 -9.99478 -9.65826 -9.51740 -8.97733 -8.46569 -6.14994 -0.25595 0.37331 0.37475 0.73902 0.85208 1.33431 1.34407 1.44181 1.52272 1.75090 2.17902 2.74248 2.83310 2.92803 3.17111 3.42753 3.45508 3.74854 3.84071 3.96315 4.02837 4.11246 4.23499 4.32224 4.41163 4.42096 4.47298 4.57833 4.62547 4.75080 4.78949 5.02380 5.05624 5.13424 5.23311 5.30334 5.38113 5.44449 5.48880 5.63925 5.65549 5.72872 5.75409 5.90374 6.03253 6.23245 6.37116 6.70422 6.98077 7.19693 7.79753 8.76870 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017658 B = 0.001886 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.324517 B =14840.228705 C =15561.554844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.110 3.890 11 C -0.244 4.244 12 C -0.074 4.074 13 C -0.177 4.177 14 C -0.028 4.028 15 C -0.079 4.079 16 C 0.520 3.480 17 O -0.566 6.566 18 N -0.519 5.519 19 N -0.519 5.519 20 C 0.561 3.439 21 O -0.568 6.568 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.069 4.069 28 C -0.190 4.190 29 H 0.272 0.728 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.441 0.559 36 H 0.434 0.566 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.132 0.868 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 -26.734 -8.353 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.060 3.940 11 C -0.263 4.263 12 C -0.092 4.092 13 C -0.195 4.195 14 C -0.029 4.029 15 C -0.119 4.119 16 C 0.308 3.692 17 O -0.442 6.442 18 N -0.269 5.269 19 N -0.266 5.266 20 C 0.350 3.650 21 O -0.447 6.447 22 C -0.154 4.154 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.104 4.104 26 C -0.146 4.146 27 C -0.089 4.089 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.163 0.837 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.286 0.714 36 H 0.278 0.722 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.150 0.850 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.760 -26.534 -8.356 27.874 hybrid contribution 0.001 1.281 0.018 1.281 sum 1.761 -25.253 -8.338 26.652 Atomic orbital electron populations 1.70190 1.08020 1.28728 1.49093 1.26609 0.96894 1.02770 0.95960 0.84577 0.77836 0.74518 0.79201 1.18932 1.19491 1.17568 1.21816 0.92496 0.81479 1.53110 0.88187 1.83936 1.35912 1.12569 1.81726 1.19888 0.91680 0.87954 0.94465 1.21313 0.93124 1.00284 1.11568 1.21138 1.00266 0.91469 0.96335 1.21000 0.93426 0.98155 1.06920 1.19068 0.93730 0.92416 0.97648 1.20625 1.05140 0.93810 0.92342 1.21345 0.76202 0.78639 0.92969 1.90777 1.51893 1.60421 1.41079 1.45017 1.62190 1.20074 0.99614 1.44889 1.61280 1.19849 1.00603 1.18767 0.76777 0.79068 0.90367 1.90764 1.52880 1.61043 1.40034 1.19607 1.06984 0.98182 0.90668 1.21558 0.97628 0.99467 0.92464 1.21498 0.99162 0.96632 0.97420 1.21856 0.94291 0.93925 1.00279 1.21504 1.00288 1.01498 0.91264 1.21393 0.94894 0.93215 0.99351 1.20240 0.99391 0.90438 1.10859 0.91891 0.86484 0.83671 0.83238 0.85176 0.82880 0.71449 0.72176 0.84857 0.82927 0.82395 0.82618 0.84974 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.74 13.67 21.61 0.30 -57.45 16 2 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 3 Si 1.02 43.75 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.41 -24.70 9.49 67.92 0.64 -24.05 16 8 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -14.57 9.76 -22.72 -0.22 -14.80 16 10 C 0.11 5.69 6.65 22.58 0.15 5.84 16 11 C -0.24 -10.99 9.17 22.39 0.21 -10.78 16 12 C -0.07 -2.61 10.04 22.25 0.22 -2.38 16 13 C -0.18 -5.50 9.70 22.30 0.22 -5.28 16 14 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 15 C -0.08 -1.69 5.83 29.10 0.17 -1.52 16 16 C 0.52 13.35 7.94 87.66 0.70 14.05 16 17 O -0.57 -19.85 15.87 -3.03 -0.05 -19.89 16 18 N -0.52 -11.02 6.26 -173.53 -1.09 -12.10 16 19 N -0.52 -11.28 6.21 -175.60 -1.09 -12.37 16 20 C 0.56 12.55 7.89 86.79 0.68 13.23 16 21 O -0.57 -15.44 16.19 -3.88 -0.06 -15.50 16 22 C -0.15 -2.70 5.87 -20.09 -0.12 -2.82 16 23 C -0.09 -1.32 9.54 22.53 0.21 -1.10 16 24 C -0.13 -1.34 10.03 22.23 0.22 -1.12 16 25 C -0.09 -0.72 10.04 22.33 0.22 -0.49 16 26 C -0.13 -1.30 10.03 22.23 0.22 -1.07 16 27 C -0.07 -1.08 9.60 22.52 0.22 -0.87 16 28 C -0.19 -8.31 9.65 22.39 0.22 -8.09 16 29 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 30 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 32 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.13 2.29 8.08 -2.39 -0.02 2.27 16 34 H 0.15 1.92 8.08 -2.39 -0.02 1.91 16 35 H 0.44 7.54 8.00 -213.32 -1.71 5.84 16 36 H 0.43 8.94 6.04 -213.32 -1.29 7.65 16 37 H 0.13 1.66 6.41 -2.91 -0.02 1.64 16 38 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.13 2.12 7.65 -2.91 -0.02 2.10 16 42 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -86.08 371.91 2.49 -83.60 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.90 Total: 31.22 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 4.57 Total: -28.48 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.88 Total: -81.92 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -0.33 Total: -50.19 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -86.08 2.49 -83.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089598784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.613 kcal (2) G-P(sol) polarization free energy of solvation -86.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds