Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.91314 * 2 1 4 4 C 1.54907 * 111.00311 * 123.90511 * 2 1 3 5 5 N 1.47423 * 104.82908 * 81.06550 * 4 2 1 6 6 C 1.34781 * 125.64593 * 204.08697 * 5 4 2 7 7 O 1.21569 * 119.99562 * 174.25591 * 6 5 4 8 8 C 1.47726 * 119.99913 * 354.26753 * 6 5 4 9 9 C 1.39661 * 120.11335 * 335.23146 * 8 6 5 10 10 C 1.37832 * 119.90511 * 179.74628 * 9 8 6 11 11 C 1.38641 * 120.13081 * 0.51536 * 10 9 8 12 12 F 1.35103 * 119.88582 * 179.74293 * 11 10 9 13 13 C 1.38738 * 120.23028 * 359.76223 * 11 10 9 14 14 Cl 1.73605 * 119.95340 * 180.02562 * 13 11 10 15 15 C 1.37965 * 120.09304 * 359.97438 * 13 11 10 16 16 C 1.47019 * 108.70675 * 24.12465 * 5 4 2 17 17 C 1.54324 * 107.27094 * 358.94367 * 16 5 4 18 18 H 1.09001 * 110.72337 * 96.16881 * 17 16 5 19 19 C 1.52999 * 110.71958 * 219.26530 * 17 16 5 20 20 N 1.46504 * 109.47258 * 291.15520 * 19 17 16 21 21 C 1.36933 * 120.00132 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99835 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00250 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99542 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00331 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47133 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47176 * 119.99566 * 25 23 21 28 28 H 1.48503 * 109.46854 * 240.00145 * 25 23 21 29 29 H 1.08994 * 109.47395 * 183.89761 * 1 2 3 30 30 H 1.09008 * 109.46638 * 303.90028 * 1 2 3 31 31 H 1.08998 * 109.47318 * 63.89569 * 1 2 3 32 32 H 1.08993 * 110.36816 * 322.22278 * 4 2 1 33 33 H 1.09004 * 110.45681 * 199.94776 * 4 2 1 34 34 H 1.08008 * 120.04461 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.93646 * 180.25285 * 10 9 8 36 36 H 1.08005 * 120.06419 * 180.02562 * 15 13 11 37 37 H 1.09000 * 109.88696 * 239.52237 * 16 5 4 38 38 H 1.09010 * 109.88206 * 118.35683 * 16 5 4 39 39 H 1.09003 * 109.47425 * 51.15659 * 19 17 16 40 40 H 1.08999 * 109.47450 * 171.15399 * 19 17 16 41 41 H 0.96999 * 119.99625 * 0.02562 * 20 19 17 42 42 H 0.97004 * 119.99674 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 2.0139 -2.2159 0.7731 6 6 1.9471 -3.2830 1.5938 7 8 1.7866 -4.3959 1.1317 8 6 2.0688 -3.1000 3.0546 9 6 2.7430 -1.9899 3.5680 10 6 2.8495 -1.8207 4.9317 11 6 2.2980 -2.7557 5.7942 12 9 2.4098 -2.5877 7.1300 13 6 1.6320 -3.8636 5.2901 14 17 0.9436 -5.0295 6.3766 15 6 1.5152 -4.0394 3.9267 16 6 2.0284 -2.2646 -0.6962 17 6 2.0861 -0.8078 -1.2023 18 1 3.1133 -0.5159 -1.4211 19 6 1.1999 -0.6281 -2.4365 20 7 1.7834 -1.3548 -3.5668 21 6 1.1603 -1.3391 -4.7861 22 1 0.2384 -0.7913 -4.9143 23 6 1.7129 -2.0281 -5.8569 24 7 2.8357 -2.6969 -5.7002 25 14 0.8633 -2.0061 -7.5203 26 1 -0.3737 -1.1888 -7.4336 27 1 1.7753 -1.4185 -8.5343 28 1 0.5122 -3.3940 -7.9152 29 1 -0.3634 -1.0252 0.0698 30 1 -0.3633 0.5732 0.8531 31 1 -0.3634 0.4522 -0.9228 32 1 1.4673 -0.6462 2.0836 33 1 3.1180 -0.5240 1.4042 34 1 3.1772 -1.2631 2.8973 35 1 3.3672 -0.9604 5.3293 36 1 0.9963 -4.9018 3.5349 37 1 1.1218 -2.7479 -1.0602 38 1 2.9063 -2.8116 -1.0403 39 1 0.2038 -1.0189 -2.2286 40 1 1.1303 0.4315 -2.6827 41 1 2.6109 -1.8477 -3.4513 42 1 3.2221 -3.1781 -6.4486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754820700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = -39.525248 kcal Electronic energy + Delta-G solvation = -26722.717946 eV Core-core repulsion = 22643.624414 eV Total energy + Delta-G solvation = -4079.093531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.47990 -40.83486 -39.15836 -37.86034 -36.94217 -34.79975 -33.00653 -31.58125 -31.33877 -31.10574 -28.94402 -27.03139 -25.72480 -24.17634 -23.57156 -22.87621 -21.68463 -20.13966 -19.31040 -18.17728 -17.92174 -17.11654 -16.88673 -16.41969 -16.19689 -15.87712 -15.31836 -14.87051 -14.61973 -14.40485 -14.11489 -13.83130 -13.78494 -13.59102 -13.36555 -13.21159 -13.01653 -12.67702 -12.35239 -12.28752 -12.09884 -11.91985 -11.74547 -11.60113 -11.43734 -11.05730 -10.87712 -10.59961 -10.52760 -10.35696 -10.09040 -9.97948 -9.70784 -9.58158 -9.21788 -8.90150 -8.66478 -6.94711 -5.78009 -3.07206 0.13837 0.50319 1.49781 2.36397 2.80204 3.19485 3.42925 3.48358 3.48941 3.50764 4.05419 4.06298 4.33461 4.45857 4.56277 4.57498 4.67799 4.81423 4.97806 5.12109 5.20934 5.27275 5.34462 5.35698 5.44446 5.48142 5.57545 5.63410 5.71804 5.74381 5.92732 5.97822 6.03070 6.10818 6.19570 6.29367 6.31449 6.39512 6.64289 6.78311 7.38785 7.68866 7.99696 8.40407 9.51865 10.08315 10.42375 11.44790 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.002232 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.115848 B =12540.062544 C =13155.172452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.094 3.906 5 N -0.607 5.607 6 C 0.570 3.430 7 O -0.526 6.526 8 C -0.121 4.121 9 C -0.065 4.065 10 C -0.148 4.148 11 C 0.129 3.871 12 F -0.123 7.123 13 C -0.083 4.083 14 Cl -0.043 7.043 15 C -0.027 4.027 16 C 0.117 3.883 17 C -0.101 4.101 18 H 0.087 0.913 19 C 0.164 3.836 20 N -0.733 5.733 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 4.971 26.155 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.028 4.028 5 N -0.340 5.340 6 C 0.358 3.642 7 O -0.403 6.403 8 C -0.125 4.125 9 C -0.083 4.083 10 C -0.167 4.167 11 C 0.109 3.891 12 F -0.101 7.101 13 C -0.110 4.110 14 Cl -0.014 7.014 15 C -0.046 4.046 16 C -0.004 4.004 17 C -0.121 4.121 18 H 0.105 0.895 19 C 0.036 3.964 20 N -0.378 5.378 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.217 0.783 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.825 4.230 25.953 26.308 hybrid contribution -0.082 -0.278 -0.532 0.606 sum -0.908 3.952 25.421 25.743 Atomic orbital electron populations 1.21791 0.93964 1.02274 1.02148 1.22371 0.96802 0.99025 0.93545 0.88873 1.22776 1.00516 0.81028 0.98515 1.48402 1.71959 1.05779 1.07907 1.17635 0.77697 0.83812 0.85065 1.90851 1.48957 1.23679 1.76825 1.19949 1.02389 0.96394 0.93769 1.21856 0.95257 0.96234 0.94987 1.21110 1.02580 1.00052 0.92923 1.17659 0.98726 0.94626 0.78102 1.91565 1.93838 1.95094 1.29617 1.20855 1.04224 0.93795 0.92173 1.98406 1.82976 1.56961 1.63015 1.21064 0.95712 0.98497 0.89328 1.22112 1.03459 0.97877 0.76946 1.22509 1.01300 0.92997 0.95245 0.89492 1.20701 0.94404 0.95587 0.85708 1.42381 1.28692 1.60254 1.06452 1.19237 1.04815 1.25926 0.87152 0.91136 1.24747 0.97599 1.00331 0.98250 1.69667 1.20285 1.37087 1.30990 0.86128 0.78526 0.77240 0.84350 1.20565 1.21873 1.21844 0.92405 0.92916 0.91203 0.90169 0.90807 0.82625 0.82983 0.82669 0.90282 0.90863 0.95636 0.95847 0.78285 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.16 37.16 0.30 -1.20 16 2 C -0.10 -0.98 3.54 -88.47 -0.31 -1.30 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.09 0.82 4.46 -2.53 -0.01 0.81 16 5 N -0.61 -7.67 3.31 -171.67 -0.57 -8.24 16 6 C 0.57 7.91 7.64 -12.38 -0.09 7.82 16 7 O -0.53 -9.52 16.93 5.30 0.09 -9.43 16 8 C -0.12 -1.27 5.67 -104.97 -0.59 -1.87 16 9 C -0.07 -0.49 8.07 -39.20 -0.32 -0.81 16 10 C -0.15 -0.99 10.01 -39.58 -0.40 -1.39 16 11 C 0.13 1.11 7.28 -39.25 -0.29 0.83 16 12 F -0.12 -1.12 16.83 2.25 0.04 -1.08 16 13 C -0.08 -0.79 6.32 -39.50 -0.25 -1.04 16 14 Cl -0.04 -0.40 28.60 -51.86 -1.48 -1.88 16 15 C -0.03 -0.27 9.36 -39.16 -0.37 -0.64 16 16 C 0.12 1.82 5.95 -3.07 -0.02 1.80 16 17 C -0.10 -1.42 2.84 -88.79 -0.25 -1.68 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.16 3.00 4.45 -4.04 -0.02 2.99 16 20 N -0.73 -17.81 5.48 -59.91 -0.33 -18.14 16 21 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 25 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.06 0.70 7.91 -51.93 -0.41 0.29 16 30 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.79 6.80 -51.93 -0.35 0.44 16 32 H 0.08 0.57 6.75 -51.93 -0.35 0.22 16 33 H 0.07 0.49 6.81 -51.93 -0.35 0.14 16 34 H 0.16 0.88 4.61 -52.48 -0.24 0.64 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.16 1.63 7.84 -52.48 -0.41 1.22 16 37 H 0.08 1.43 7.73 -51.93 -0.40 1.02 16 38 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 39 H 0.03 0.48 6.80 -51.93 -0.35 0.13 16 40 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.38 9.85 7.60 -40.82 -0.31 9.54 16 42 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 362.06 15.07 5.46 5.46 Total: -1.00 -32.51 362.06 -9.22 -41.73 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.27 Total: 4.49 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.86 Total: -2.88 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.17 Total: -53.67 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.48 Total: -1.88 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.51 -9.22 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754820700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.209 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds