Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.91314 * 2 1 4 4 C 1.54907 * 111.00311 * 123.90511 * 2 1 3 5 5 N 1.47423 * 104.82908 * 81.06550 * 4 2 1 6 6 C 1.34781 * 125.64593 * 204.08697 * 5 4 2 7 7 O 1.21569 * 119.99562 * 174.25591 * 6 5 4 8 8 C 1.47726 * 119.99913 * 354.26753 * 6 5 4 9 9 C 1.39661 * 120.11335 * 335.23146 * 8 6 5 10 10 C 1.37832 * 119.90511 * 179.74628 * 9 8 6 11 11 C 1.38641 * 120.13081 * 0.51536 * 10 9 8 12 12 F 1.35103 * 119.88582 * 179.74293 * 11 10 9 13 13 C 1.38738 * 120.23028 * 359.76223 * 11 10 9 14 14 Cl 1.73605 * 119.95340 * 180.02562 * 13 11 10 15 15 C 1.37965 * 120.09304 * 359.97438 * 13 11 10 16 16 C 1.47019 * 108.70675 * 24.12465 * 5 4 2 17 17 C 1.54324 * 107.27094 * 358.94367 * 16 5 4 18 18 H 1.09001 * 110.72337 * 96.16881 * 17 16 5 19 19 C 1.52999 * 110.71958 * 219.26530 * 17 16 5 20 20 N 1.46504 * 109.47258 * 291.15520 * 19 17 16 21 21 C 1.36933 * 120.00132 * 179.97438 * 20 19 17 22 22 H 1.08002 * 119.99835 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00250 * 180.02562 * 21 20 19 24 24 N 1.31620 * 119.99542 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00331 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47133 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47176 * 119.99566 * 25 23 21 28 28 H 1.48503 * 109.46854 * 240.00145 * 25 23 21 29 29 H 1.08994 * 109.47395 * 183.89761 * 1 2 3 30 30 H 1.09008 * 109.46638 * 303.90028 * 1 2 3 31 31 H 1.08998 * 109.47318 * 63.89569 * 1 2 3 32 32 H 1.08993 * 110.36816 * 322.22278 * 4 2 1 33 33 H 1.09004 * 110.45681 * 199.94776 * 4 2 1 34 34 H 1.08008 * 120.04461 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.93646 * 180.25285 * 10 9 8 36 36 H 1.08005 * 120.06419 * 180.02562 * 15 13 11 37 37 H 1.09000 * 109.88696 * 239.52237 * 16 5 4 38 38 H 1.09010 * 109.88206 * 118.35683 * 16 5 4 39 39 H 1.09003 * 109.47425 * 51.15659 * 19 17 16 40 40 H 1.08999 * 109.47450 * 171.15399 * 19 17 16 41 41 H 0.96999 * 119.99625 * 0.02562 * 20 19 17 42 42 H 0.97004 * 119.99674 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2003 5 7 2.0139 -2.2159 0.7731 6 6 1.9471 -3.2830 1.5938 7 8 1.7866 -4.3959 1.1317 8 6 2.0688 -3.1000 3.0546 9 6 2.7430 -1.9899 3.5680 10 6 2.8495 -1.8207 4.9317 11 6 2.2980 -2.7557 5.7942 12 9 2.4098 -2.5877 7.1300 13 6 1.6320 -3.8636 5.2901 14 17 0.9436 -5.0295 6.3766 15 6 1.5152 -4.0394 3.9267 16 6 2.0284 -2.2646 -0.6962 17 6 2.0861 -0.8078 -1.2023 18 1 3.1133 -0.5159 -1.4211 19 6 1.1999 -0.6281 -2.4365 20 7 1.7834 -1.3548 -3.5668 21 6 1.1603 -1.3391 -4.7861 22 1 0.2384 -0.7913 -4.9143 23 6 1.7129 -2.0281 -5.8569 24 7 2.8357 -2.6969 -5.7002 25 14 0.8633 -2.0061 -7.5203 26 1 -0.3737 -1.1888 -7.4336 27 1 1.7753 -1.4185 -8.5343 28 1 0.5122 -3.3940 -7.9152 29 1 -0.3634 -1.0252 0.0698 30 1 -0.3633 0.5732 0.8531 31 1 -0.3634 0.4522 -0.9228 32 1 1.4673 -0.6462 2.0836 33 1 3.1180 -0.5240 1.4042 34 1 3.1772 -1.2631 2.8973 35 1 3.3672 -0.9604 5.3293 36 1 0.9963 -4.9018 3.5349 37 1 1.1218 -2.7479 -1.0602 38 1 2.9063 -2.8116 -1.0403 39 1 0.2038 -1.0189 -2.2286 40 1 1.1303 0.4315 -2.6827 41 1 2.6109 -1.8477 -3.4513 42 1 3.2221 -3.1781 -6.4486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754820700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -59.634585 kcal Electronic energy + Delta-G solvation = -26723.589952 eV Core-core repulsion = 22643.624414 eV Total energy + Delta-G solvation = -4079.965538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.15410 -41.79303 -40.01646 -38.93599 -37.67212 -36.48960 -34.37233 -32.81665 -32.25966 -32.09971 -30.30471 -27.93005 -27.17125 -25.44703 -24.36575 -24.17966 -22.83547 -21.04288 -20.50751 -19.24011 -18.84099 -18.56684 -17.78123 -17.45041 -16.95230 -16.86116 -16.69746 -16.07865 -15.64312 -15.43785 -15.33381 -15.05123 -14.77071 -14.63943 -14.50831 -14.16162 -14.05808 -13.81559 -13.75591 -13.27734 -13.09316 -12.97673 -12.83128 -12.70527 -12.63202 -12.50517 -12.18859 -12.08610 -11.89605 -11.63724 -11.50007 -11.38218 -11.18700 -10.92921 -10.25854 -9.96679 -9.71001 -8.98289 -7.95029 -5.23242 -0.59492 -0.15090 0.78890 1.46720 1.47958 1.48046 1.57546 1.79880 2.37494 2.55899 2.82130 3.21027 3.39050 3.42460 3.50663 3.61228 3.83178 3.84077 3.89766 4.17980 4.22583 4.30611 4.36521 4.54210 4.55243 4.61579 4.64527 4.68977 4.76967 4.81766 4.85677 4.94824 4.99911 5.04929 5.10473 5.23604 5.26856 5.34674 5.43688 5.51029 5.53508 6.27785 6.38968 6.93949 7.33985 8.10993 8.32085 9.28804 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.002232 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.115848 B =12540.062544 C =13155.172452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.129 0.871 4 C 0.089 3.911 5 N -0.603 5.603 6 C 0.565 3.435 7 O -0.585 6.585 8 C -0.133 4.133 9 C -0.048 4.048 10 C -0.127 4.127 11 C 0.128 3.872 12 F -0.125 7.125 13 C -0.091 4.091 14 Cl -0.048 7.048 15 C -0.037 4.037 16 C 0.124 3.876 17 C -0.092 4.092 18 H 0.092 0.908 19 C 0.163 3.837 20 N -0.747 5.747 21 C -0.241 4.241 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.971 3.029 26 H -0.265 1.265 27 H -0.292 1.292 28 H -0.297 1.297 29 H 0.031 0.969 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.184 0.816 35 H 0.192 0.808 36 H 0.140 0.860 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.019 0.981 40 H 0.035 0.965 41 H 0.373 0.627 42 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 8.388 28.369 29.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.147 0.853 4 C -0.031 4.031 5 N -0.335 5.335 6 C 0.355 3.645 7 O -0.467 6.467 8 C -0.137 4.137 9 C -0.066 4.066 10 C -0.145 4.145 11 C 0.107 3.893 12 F -0.103 7.103 13 C -0.118 4.118 14 Cl -0.019 7.019 15 C -0.056 4.056 16 C 0.001 3.999 17 C -0.112 4.112 18 H 0.110 0.890 19 C 0.037 3.963 20 N -0.390 5.390 21 C -0.372 4.372 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.800 3.200 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.225 1.225 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.201 0.799 35 H 0.210 0.790 36 H 0.158 0.842 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.204 0.796 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.488 7.720 28.213 29.254 hybrid contribution -0.248 -1.314 -1.135 1.754 sum -0.736 6.406 27.078 27.836 Atomic orbital electron populations 1.21797 0.94410 1.01074 1.02940 1.22436 0.96359 1.00288 0.91435 0.85289 1.23194 1.03360 0.77808 0.98752 1.48426 1.71058 1.07610 1.06388 1.18237 0.76518 0.83140 0.86587 1.90815 1.51725 1.26048 1.78086 1.19686 1.04533 0.98227 0.91228 1.22078 0.93656 0.95101 0.95781 1.21480 1.00951 1.00155 0.91950 1.17880 0.98478 0.94593 0.78311 1.91568 1.93796 1.95047 1.29868 1.20874 1.04902 0.94377 0.91695 1.98402 1.83165 1.57386 1.62982 1.20938 0.96390 0.98419 0.89883 1.21787 1.00342 0.98484 0.79268 1.22373 1.00946 0.92779 0.95074 0.88954 1.20860 0.94687 0.95006 0.85735 1.42635 1.28361 1.60710 1.07296 1.19658 1.04645 1.24618 0.88327 0.90549 1.25563 0.98614 1.00925 1.01912 1.69823 1.22014 1.38615 1.31671 0.85104 0.77985 0.76851 0.80025 1.18879 1.21865 1.22495 0.94969 0.89792 0.92431 0.87276 0.87053 0.79930 0.79043 0.84241 0.94107 0.93473 0.96270 0.94752 0.79566 0.94106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.16 71.98 0.59 -2.07 16 2 C -0.09 -1.41 3.54 -9.40 -0.03 -1.45 16 3 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.09 1.18 4.46 86.85 0.39 1.56 16 5 N -0.60 -14.77 3.31 -815.32 -2.70 -17.47 16 6 C 0.56 15.91 7.64 86.75 0.66 16.57 16 7 O -0.59 -22.78 16.93 -3.93 -0.07 -22.85 16 8 C -0.13 -2.62 5.67 -20.09 -0.11 -2.73 16 9 C -0.05 -0.52 8.07 22.52 0.18 -0.34 16 10 C -0.13 -1.08 10.01 22.27 0.22 -0.86 16 11 C 0.13 1.83 7.28 22.49 0.16 1.99 16 12 F -0.12 -1.91 16.83 44.97 0.76 -1.16 16 13 C -0.09 -1.63 6.32 22.32 0.14 -1.49 16 14 Cl -0.05 -0.89 28.60 -2.72 -0.08 -0.97 16 15 C -0.04 -0.75 9.36 22.54 0.21 -0.54 16 16 C 0.12 3.99 5.95 86.73 0.52 4.51 16 17 C -0.09 -2.51 2.84 -9.61 -0.03 -2.54 16 18 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 19 C 0.16 5.99 4.45 86.38 0.38 6.37 16 20 N -0.75 -37.15 5.48 -343.44 -1.88 -39.03 16 21 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 25 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 29 H 0.03 0.75 7.91 -2.39 -0.02 0.73 16 30 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.06 1.19 6.80 -2.39 -0.02 1.18 16 32 H 0.11 0.91 6.75 -2.39 -0.02 0.90 16 33 H 0.11 0.75 6.81 -2.38 -0.02 0.74 16 34 H 0.18 0.95 4.61 -2.91 -0.01 0.93 16 35 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 36 H 0.14 3.22 7.84 -2.91 -0.02 3.20 16 37 H 0.04 1.60 7.73 -2.39 -0.02 1.58 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.02 0.74 6.80 -2.39 -0.02 0.72 16 40 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 41 H 0.37 19.89 7.60 -92.71 -0.70 19.19 16 42 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -76.19 362.06 3.30 -72.89 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.36 Total: 17.40 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.59 Total: 2.43 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.30 Total: -116.26 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.07 Total: -22.85 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.76 Total: -1.16 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -76.19 3.30 -72.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754820700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.259 kcal (2) G-P(sol) polarization free energy of solvation -76.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds