Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.79553 * 2 1 4 4 C 1.54943 * 110.73988 * 236.71368 * 2 1 3 5 5 N 1.48120 * 103.25360 * 279.03716 * 4 2 1 6 6 C 1.34773 * 127.03626 * 140.67423 * 5 4 2 7 7 O 1.21564 * 120.00336 * 176.28394 * 6 5 4 8 8 C 1.47730 * 119.99875 * 356.28404 * 6 5 4 9 9 C 1.39664 * 120.11034 * 34.55721 * 8 6 5 10 10 C 1.37836 * 119.89911 * 180.02562 * 9 8 6 11 11 C 1.38640 * 120.13506 * 359.97438 * 10 9 8 12 12 F 1.35099 * 119.88407 * 180.02562 * 11 10 9 13 13 C 1.38743 * 120.22964 * 0.02562 * 11 10 9 14 14 Cl 1.73596 * 119.95107 * 179.97438 * 13 11 10 15 15 C 1.37966 * 120.09310 * 359.72029 * 13 11 10 16 16 C 1.47487 * 105.93154 * 320.70892 * 5 4 2 17 17 C 1.54006 * 107.08578 * 25.44553 * 16 5 4 18 18 H 1.08996 * 110.32810 * 239.79943 * 17 16 5 19 19 C 1.53001 * 110.32506 * 117.58377 * 17 16 5 20 20 N 1.46501 * 109.46919 * 66.45848 * 19 17 16 21 21 C 1.36943 * 119.99756 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00261 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99771 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00260 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99889 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47097 * 60.00248 * 25 23 21 27 27 H 1.48502 * 109.47138 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47476 * 300.00166 * 25 23 21 29 29 H 1.09000 * 109.47061 * 296.70642 * 1 2 3 30 30 H 1.08994 * 109.47250 * 56.71012 * 1 2 3 31 31 H 1.09002 * 109.46652 * 176.70907 * 1 2 3 32 32 H 1.08999 * 110.66076 * 160.59891 * 4 2 1 33 33 H 1.08998 * 110.80553 * 37.54443 * 4 2 1 34 34 H 1.08000 * 120.05263 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.93506 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.06836 * 180.27927 * 15 13 11 37 37 H 1.09001 * 109.91503 * 266.08379 * 16 5 4 38 38 H 1.09001 * 110.07318 * 144.89610 * 16 5 4 39 39 H 1.08999 * 109.47281 * 186.45374 * 19 17 16 40 40 H 1.08997 * 109.47520 * 306.45973 * 19 17 16 41 41 H 0.96991 * 120.00243 * 359.97438 * 20 19 17 42 42 H 0.97003 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0191 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9872 -2.2038 -0.7624 6 6 1.6222 -3.2695 -1.5022 7 8 1.6560 -4.3848 -1.0198 8 6 1.1810 -3.0824 -2.8996 9 6 1.7583 -2.0853 -3.6891 10 6 1.3430 -1.9141 -4.9922 11 6 0.3542 -2.7299 -5.5204 12 9 -0.0486 -2.5580 -6.7984 13 6 -0.2230 -3.7221 -4.7411 14 17 -1.4609 -4.7390 -5.4097 15 6 0.1892 -3.9051 -3.4372 16 6 2.3763 -2.2014 0.6602 17 6 2.0776 -0.7937 1.2087 18 1 2.9910 -0.3314 1.5829 19 6 1.0253 -0.8673 2.3169 20 7 1.5803 -1.5794 3.4706 21 6 0.8158 -1.7685 4.5910 22 1 -0.1963 -1.3931 4.6239 23 6 1.3414 -2.4438 5.6840 24 7 2.5747 -2.9018 5.6438 25 14 0.2990 -2.7011 7.2125 26 1 -0.9143 -3.4809 6.8587 27 1 1.0858 -3.4449 8.2289 28 1 -0.1036 -1.3828 7.7649 29 1 -0.3633 0.4619 0.9180 30 1 -0.3633 0.5640 -0.8590 31 1 -0.3633 -1.0260 -0.0590 32 1 3.1145 -0.5225 -1.4131 33 1 1.4603 -0.6319 -2.0939 34 1 2.5284 -1.4488 -3.2789 35 1 1.7887 -1.1430 -5.6030 36 1 -0.2571 -4.6805 -2.8324 37 1 3.4403 -2.4185 0.7545 38 1 1.7962 -2.9441 1.2080 39 1 0.7407 0.1417 2.6153 40 1 0.1475 -1.3989 1.9497 41 1 2.4891 -1.9170 3.4410 42 1 2.9419 -3.3740 6.4074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754820702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -38.163142 kcal Electronic energy + Delta-G solvation = -26949.352710 eV Core-core repulsion = 22870.318244 eV Total energy + Delta-G solvation = -4079.034466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.46257 -40.76862 -39.14903 -37.83357 -36.92109 -34.73351 -32.92776 -31.58761 -31.36853 -31.07065 -28.93093 -27.04126 -25.50991 -24.20062 -23.58431 -22.88277 -21.75712 -20.09936 -19.12520 -18.18368 -17.89677 -17.12279 -16.86918 -16.41054 -16.18555 -15.91407 -15.23948 -14.88151 -14.57218 -14.38210 -14.03350 -13.85067 -13.71569 -13.59063 -13.41908 -13.27921 -12.92066 -12.74284 -12.26010 -12.08294 -11.99034 -11.90012 -11.71416 -11.64821 -11.43324 -11.03472 -10.83998 -10.60874 -10.50155 -10.29482 -10.06210 -9.97615 -9.68089 -9.56365 -9.18855 -8.87319 -8.67729 -6.92571 -5.75997 -3.05028 0.17835 0.51096 1.51583 2.39857 2.78563 3.16598 3.45012 3.49497 3.50387 3.50456 4.07554 4.08496 4.37686 4.47819 4.59154 4.59792 4.71821 4.85484 4.98972 5.17017 5.24356 5.30932 5.33607 5.37333 5.44837 5.52392 5.58766 5.64342 5.72593 5.74247 5.95550 6.01729 6.04486 6.10104 6.22397 6.27940 6.36743 6.44898 6.69066 6.83760 7.44675 7.69784 8.02710 8.42666 9.53845 10.10542 10.44728 11.46727 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.002483 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.073565 B =11272.488517 C =11936.971640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.089 3.911 5 N -0.608 5.608 6 C 0.573 3.427 7 O -0.524 6.524 8 C -0.117 4.117 9 C -0.062 4.062 10 C -0.147 4.147 11 C 0.128 3.872 12 F -0.123 7.123 13 C -0.080 4.080 14 Cl -0.042 7.042 15 C -0.028 4.028 16 C 0.113 3.887 17 C -0.104 4.104 18 H 0.087 0.913 19 C 0.162 3.838 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.383 0.617 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 5.865 -25.678 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.034 4.034 5 N -0.341 5.341 6 C 0.361 3.639 7 O -0.401 6.401 8 C -0.121 4.121 9 C -0.080 4.080 10 C -0.166 4.166 11 C 0.107 3.893 12 F -0.101 7.101 13 C -0.108 4.108 14 Cl -0.013 7.013 15 C -0.048 4.048 16 C -0.009 4.009 17 C -0.123 4.123 18 H 0.105 0.895 19 C 0.034 3.966 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.217 0.783 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.115 5.076 -25.437 26.025 hybrid contribution -0.373 -0.305 0.575 0.750 sum -2.488 4.771 -24.862 25.438 Atomic orbital electron populations 1.21821 0.94168 1.02215 1.01955 1.22261 0.96780 0.98953 0.93750 0.89238 1.23014 1.01104 0.80880 0.98356 1.48675 1.65965 1.07016 1.12447 1.17583 0.77935 0.83745 0.84605 1.90866 1.53780 1.23177 1.72295 1.19935 0.99216 0.97872 0.95041 1.21574 0.98452 0.95402 0.92617 1.21086 0.97846 1.01037 0.96595 1.17626 0.96044 0.96014 0.79595 1.91563 1.89276 1.94449 1.34839 1.20853 0.97751 0.97197 0.95000 1.98408 1.51233 1.66538 1.85099 1.21036 0.94131 0.97466 0.92153 1.22227 1.00607 0.98935 0.79128 1.22360 1.00624 0.93958 0.95404 0.89481 1.20794 0.93644 0.95465 0.86649 1.42386 1.15555 1.67193 1.12643 1.19148 0.95956 1.29993 0.92118 0.91301 1.24733 0.96536 1.01082 0.98487 1.69641 1.14245 1.43076 1.31149 0.86276 0.79304 0.77678 0.82969 1.21257 1.21680 1.21294 0.91293 0.93140 0.92398 0.90378 0.89621 0.83105 0.82993 0.82746 0.91409 0.88872 0.96006 0.95795 0.78310 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.99 37.16 0.30 -1.28 16 2 C -0.10 -1.01 3.60 -88.74 -0.32 -1.33 16 3 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 4 C 0.09 0.79 4.75 -2.13 -0.01 0.78 16 5 N -0.61 -7.82 3.19 -170.91 -0.54 -8.37 16 6 C 0.57 8.16 7.59 -12.38 -0.09 8.07 16 7 O -0.52 -9.78 17.17 5.31 0.09 -9.69 16 8 C -0.12 -1.26 5.60 -104.97 -0.59 -1.84 16 9 C -0.06 -0.47 7.76 -39.20 -0.30 -0.77 16 10 C -0.15 -0.99 10.01 -39.58 -0.40 -1.39 16 11 C 0.13 1.12 7.28 -39.25 -0.29 0.83 16 12 F -0.12 -1.14 16.83 2.25 0.04 -1.10 16 13 C -0.08 -0.78 6.32 -39.49 -0.25 -1.03 16 14 Cl -0.04 -0.41 28.60 -51.86 -1.48 -1.89 16 15 C -0.03 -0.30 9.38 -39.16 -0.37 -0.67 16 16 C 0.11 1.75 6.30 -2.98 -0.02 1.73 16 17 C -0.10 -1.49 3.00 -89.24 -0.27 -1.76 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.16 3.05 4.17 -4.04 -0.02 3.04 16 20 N -0.73 -18.07 5.33 -59.91 -0.32 -18.38 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 25 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.07 0.82 6.67 -51.93 -0.35 0.47 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 32 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.09 0.60 5.49 -51.93 -0.28 0.31 16 34 H 0.15 0.83 5.70 -52.49 -0.30 0.53 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.15 1.69 7.99 -52.49 -0.42 1.27 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.82 7.52 -51.93 -0.39 1.43 16 39 H 0.02 0.42 7.55 -51.93 -0.39 0.02 16 40 H 0.02 0.48 6.85 -51.93 -0.36 0.12 16 41 H 0.38 9.91 7.51 -40.82 -0.31 9.60 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 361.98 15.07 5.46 5.46 Total: -1.00 -32.91 361.98 -9.20 -42.11 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.27 Total: 4.77 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.87 Total: -2.93 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.14 Total: -54.20 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.91 -9.20 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754820702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.948 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds