Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 110.79553 * 2 1 4 4 C 1.54943 * 110.73988 * 236.71368 * 2 1 3 5 5 N 1.48120 * 103.25360 * 279.03716 * 4 2 1 6 6 C 1.34773 * 127.03626 * 140.67423 * 5 4 2 7 7 O 1.21564 * 120.00336 * 176.28394 * 6 5 4 8 8 C 1.47730 * 119.99875 * 356.28404 * 6 5 4 9 9 C 1.39664 * 120.11034 * 34.55721 * 8 6 5 10 10 C 1.37836 * 119.89911 * 180.02562 * 9 8 6 11 11 C 1.38640 * 120.13506 * 359.97438 * 10 9 8 12 12 F 1.35099 * 119.88407 * 180.02562 * 11 10 9 13 13 C 1.38743 * 120.22964 * 0.02562 * 11 10 9 14 14 Cl 1.73596 * 119.95107 * 179.97438 * 13 11 10 15 15 C 1.37966 * 120.09310 * 359.72029 * 13 11 10 16 16 C 1.47487 * 105.93154 * 320.70892 * 5 4 2 17 17 C 1.54006 * 107.08578 * 25.44553 * 16 5 4 18 18 H 1.08996 * 110.32810 * 239.79943 * 17 16 5 19 19 C 1.53001 * 110.32506 * 117.58377 * 17 16 5 20 20 N 1.46501 * 109.46919 * 66.45848 * 19 17 16 21 21 C 1.36943 * 119.99756 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00261 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99771 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00260 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99889 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47097 * 60.00248 * 25 23 21 27 27 H 1.48502 * 109.47138 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47476 * 300.00166 * 25 23 21 29 29 H 1.09000 * 109.47061 * 296.70642 * 1 2 3 30 30 H 1.08994 * 109.47250 * 56.71012 * 1 2 3 31 31 H 1.09002 * 109.46652 * 176.70907 * 1 2 3 32 32 H 1.08999 * 110.66076 * 160.59891 * 4 2 1 33 33 H 1.08998 * 110.80553 * 37.54443 * 4 2 1 34 34 H 1.08000 * 120.05263 * 359.97438 * 9 8 6 35 35 H 1.07998 * 119.93506 * 179.97438 * 10 9 8 36 36 H 1.07998 * 120.06836 * 180.27927 * 15 13 11 37 37 H 1.09001 * 109.91503 * 266.08379 * 16 5 4 38 38 H 1.09001 * 110.07318 * 144.89610 * 16 5 4 39 39 H 1.08999 * 109.47281 * 186.45374 * 19 17 16 40 40 H 1.08997 * 109.47520 * 306.45973 * 19 17 16 41 41 H 0.96991 * 120.00243 * 359.97438 * 20 19 17 42 42 H 0.97003 * 120.00312 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0191 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9872 -2.2038 -0.7624 6 6 1.6222 -3.2695 -1.5022 7 8 1.6560 -4.3848 -1.0198 8 6 1.1810 -3.0824 -2.8996 9 6 1.7583 -2.0853 -3.6891 10 6 1.3430 -1.9141 -4.9922 11 6 0.3542 -2.7299 -5.5204 12 9 -0.0486 -2.5580 -6.7984 13 6 -0.2230 -3.7221 -4.7411 14 17 -1.4609 -4.7390 -5.4097 15 6 0.1892 -3.9051 -3.4372 16 6 2.3763 -2.2014 0.6602 17 6 2.0776 -0.7937 1.2087 18 1 2.9910 -0.3314 1.5829 19 6 1.0253 -0.8673 2.3169 20 7 1.5803 -1.5794 3.4706 21 6 0.8158 -1.7685 4.5910 22 1 -0.1963 -1.3931 4.6239 23 6 1.3414 -2.4438 5.6840 24 7 2.5747 -2.9018 5.6438 25 14 0.2990 -2.7011 7.2125 26 1 -0.9143 -3.4809 6.8587 27 1 1.0858 -3.4449 8.2289 28 1 -0.1036 -1.3828 7.7649 29 1 -0.3633 0.4619 0.9180 30 1 -0.3633 0.5640 -0.8590 31 1 -0.3633 -1.0260 -0.0590 32 1 3.1145 -0.5225 -1.4131 33 1 1.4603 -0.6319 -2.0939 34 1 2.5284 -1.4488 -3.2789 35 1 1.7887 -1.1430 -5.6030 36 1 -0.2571 -4.6805 -2.8324 37 1 3.4403 -2.4185 0.7545 38 1 1.7962 -2.9441 1.2080 39 1 0.7407 0.1417 2.6153 40 1 0.1475 -1.3989 1.9497 41 1 2.4891 -1.9170 3.4410 42 1 2.9419 -3.3740 6.4074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754820702.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = -58.689609 kcal Electronic energy + Delta-G solvation = -26950.242804 eV Core-core repulsion = 22870.318244 eV Total energy + Delta-G solvation = -4079.924561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.14882 -41.74160 -40.02910 -38.93470 -37.67550 -36.46019 -34.32113 -32.80841 -32.27706 -32.13964 -30.30521 -28.04480 -26.92564 -25.45426 -24.38815 -24.21361 -22.94777 -21.01484 -20.35787 -19.24871 -18.84795 -18.57808 -17.78349 -17.45319 -17.00439 -16.88461 -16.67649 -16.02951 -15.62564 -15.45532 -15.37211 -15.07252 -14.73299 -14.57104 -14.51058 -14.21063 -14.10509 -13.90615 -13.59874 -13.18630 -13.08680 -12.92016 -12.79365 -12.73472 -12.63383 -12.52275 -12.23615 -12.17368 -11.88866 -11.62487 -11.50171 -11.34532 -11.16940 -10.91380 -10.26071 -9.95479 -9.73295 -8.99282 -7.96005 -5.24254 -0.56348 -0.15982 0.78212 1.45060 1.47521 1.48454 1.54306 1.79219 2.33698 2.54964 2.82316 3.22751 3.37515 3.45646 3.53647 3.63791 3.81681 3.84482 3.90055 4.20147 4.28452 4.30004 4.35716 4.56337 4.56840 4.62215 4.64851 4.68535 4.77879 4.81124 4.87445 4.94041 4.99049 5.03104 5.06458 5.19878 5.28649 5.37604 5.43051 5.48595 5.56612 6.26771 6.43205 6.95141 7.32925 8.10055 8.31863 9.27321 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.002483 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.073565 B =11272.488517 C =11936.971640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.127 0.873 4 C 0.088 3.912 5 N -0.605 5.605 6 C 0.568 3.432 7 O -0.587 6.587 8 C -0.129 4.129 9 C -0.045 4.045 10 C -0.124 4.124 11 C 0.126 3.874 12 F -0.124 7.124 13 C -0.089 4.089 14 Cl -0.049 7.049 15 C -0.041 4.041 16 C 0.117 3.883 17 C -0.096 4.096 18 H 0.095 0.905 19 C 0.163 3.837 20 N -0.746 5.746 21 C -0.246 4.246 22 H 0.073 0.927 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.274 1.274 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.136 0.864 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.011 0.989 41 H 0.374 0.626 42 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.448 9.162 -28.204 29.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.145 0.855 4 C -0.033 4.033 5 N -0.336 5.336 6 C 0.358 3.642 7 O -0.468 6.468 8 C -0.133 4.133 9 C -0.063 4.063 10 C -0.143 4.143 11 C 0.106 3.894 12 F -0.103 7.103 13 C -0.116 4.116 14 Cl -0.020 7.020 15 C -0.061 4.061 16 C -0.006 4.006 17 C -0.115 4.115 18 H 0.114 0.886 19 C 0.037 3.963 20 N -0.389 5.389 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.209 1.209 27 H -0.221 1.221 28 H -0.200 1.200 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.048 0.952 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.200 0.800 35 H 0.211 0.789 36 H 0.154 0.846 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.205 0.795 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.743 8.443 -28.007 29.304 hybrid contribution -0.552 -1.303 1.286 1.912 sum -2.295 7.140 -26.720 27.753 Atomic orbital electron populations 1.21814 0.94810 1.00797 1.02736 1.22332 0.96167 1.00344 0.91888 0.85539 1.23419 1.03920 0.77459 0.98467 1.48732 1.64940 1.08795 1.11147 1.18196 0.76976 0.83087 0.85934 1.90827 1.56376 1.25689 1.73907 1.19681 1.00384 0.99855 0.93351 1.21841 0.97997 0.94087 0.92421 1.21475 0.96036 1.00564 0.96189 1.17850 0.96318 0.95880 0.79384 1.91567 1.89375 1.94393 1.34935 1.20867 0.98075 0.97857 0.94824 1.98402 1.51604 1.66943 1.85035 1.20895 0.94933 0.97640 0.92618 1.21961 0.99563 0.98370 0.80725 1.22259 0.99686 0.94001 0.95570 0.88632 1.20925 0.94564 0.94474 0.86312 1.42620 1.15026 1.67677 1.13585 1.19567 0.96303 1.28872 0.93063 0.90922 1.25550 0.97829 1.01712 1.01656 1.69799 1.15923 1.44446 1.31746 0.85248 0.77614 0.77869 0.79265 1.20866 1.22089 1.19968 0.92712 0.89882 0.95234 0.86670 0.86685 0.80030 0.78890 0.84588 0.91448 0.94215 0.95212 0.97146 0.79456 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.99 71.98 0.58 -2.24 16 2 C -0.09 -1.50 3.60 -9.58 -0.03 -1.53 16 3 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 4 C 0.09 1.16 4.75 86.73 0.41 1.57 16 5 N -0.60 -15.04 3.19 -812.91 -2.59 -17.63 16 6 C 0.57 16.46 7.59 86.75 0.66 17.12 16 7 O -0.59 -23.60 17.17 -3.92 -0.07 -23.67 16 8 C -0.13 -2.62 5.60 -20.09 -0.11 -2.73 16 9 C -0.05 -0.49 7.76 22.52 0.17 -0.31 16 10 C -0.12 -1.06 10.01 22.27 0.22 -0.83 16 11 C 0.13 1.84 7.28 22.49 0.16 2.01 16 12 F -0.12 -1.94 16.83 44.97 0.76 -1.19 16 13 C -0.09 -1.65 6.32 22.33 0.14 -1.51 16 14 Cl -0.05 -0.94 28.60 -2.72 -0.08 -1.02 16 15 C -0.04 -0.89 9.38 22.54 0.21 -0.68 16 16 C 0.12 3.73 6.30 86.53 0.54 4.27 16 17 C -0.10 -2.65 3.00 -9.90 -0.03 -2.68 16 18 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 19 C 0.16 6.25 4.17 86.38 0.36 6.61 16 20 N -0.75 -37.96 5.33 -343.45 -1.83 -39.79 16 21 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 24 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 25 Si 0.97 47.07 29.55 68.60 2.03 49.10 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 28 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.05 1.22 6.67 -2.39 -0.02 1.20 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.03 0.73 7.61 -2.39 -0.02 0.71 16 32 H 0.12 0.82 8.05 -2.39 -0.02 0.80 16 33 H 0.12 0.92 5.49 -2.39 -0.01 0.90 16 34 H 0.18 0.84 5.70 -2.91 -0.02 0.83 16 35 H 0.19 0.16 8.06 -2.91 -0.02 0.14 16 36 H 0.14 3.33 7.99 -2.91 -0.02 3.31 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.69 7.52 -2.39 -0.02 1.67 16 39 H 0.03 1.11 7.55 -2.39 -0.02 1.09 16 40 H 0.01 0.44 6.85 -2.39 -0.02 0.42 16 41 H 0.37 20.15 7.51 -92.71 -0.70 19.45 16 42 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.94 361.98 3.47 -74.48 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.37 Total: 17.76 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 4.59 Total: 1.97 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.14 Total: -117.43 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.76 Total: -1.19 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.08 Total: -1.02 kcal Total: -77.94 3.47 -74.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754820702.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.787 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds