Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99979 * 2 1 4 4 O 1.21571 * 120.00178 * 175.61943 * 3 2 1 5 5 C 1.47700 * 120.00334 * 355.62658 * 3 2 1 6 6 C 1.39658 * 120.15848 * 47.96958 * 5 3 2 7 7 C 1.37967 * 119.85869 * 179.77149 * 6 5 3 8 8 Cl 1.73597 * 119.90410 * 180.27929 * 7 6 5 9 9 C 1.38565 * 120.19519 * 0.51175 * 7 6 5 10 10 C 1.38196 * 120.32573 * 359.74646 * 9 7 6 11 11 C 1.38325 * 120.12974 * 359.97438 * 10 9 7 12 12 F 1.35101 * 120.09247 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00009 * 180.02562 * 2 1 3 14 14 H 1.08995 * 109.47348 * 179.97438 * 13 2 1 15 15 C 1.53008 * 109.47154 * 59.99358 * 13 2 1 16 16 N 1.46498 * 109.46892 * 55.00376 * 15 13 2 17 17 C 1.36935 * 119.99856 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00099 * 359.97438 * 17 16 15 19 19 C 1.38815 * 120.00231 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99525 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00284 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47003 * 59.99962 * 21 19 17 23 23 H 1.48501 * 109.47338 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47017 * 299.99866 * 21 19 17 25 25 C 1.52996 * 109.46950 * 299.99710 * 13 2 1 26 26 C 1.52998 * 117.50142 * 116.25399 * 25 13 2 27 27 C 1.53001 * 117.49838 * 184.91422 * 25 13 2 28 28 H 1.08997 * 109.46656 * 274.82555 * 1 2 3 29 29 H 1.09005 * 109.47247 * 34.81845 * 1 2 3 30 30 H 1.08994 * 109.46961 * 154.82360 * 1 2 3 31 31 H 1.07997 * 120.06521 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.83889 * 179.72023 * 9 7 6 33 33 H 1.07990 * 119.93450 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.46515 * 174.99903 * 15 13 2 35 35 H 1.09004 * 109.46941 * 295.00109 * 15 13 2 36 36 H 0.97006 * 120.00090 * 359.97438 * 16 15 13 37 37 H 0.97007 * 119.99341 * 180.02562 * 20 19 17 38 38 H 1.09000 * 115.55259 * 330.58042 * 25 13 2 39 39 H 1.09002 * 117.49984 * 215.00471 * 26 25 13 40 40 H 1.09001 * 117.49917 * 0.02562 * 26 25 13 41 41 H 1.08998 * 117.50147 * 359.97438 * 27 25 13 42 42 H 1.08999 * 117.49952 * 144.99932 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3520 1.1687 0.0804 5 6 1.4037 2.4444 -0.0975 6 6 0.2961 2.6806 0.7196 7 6 -0.3833 3.8778 0.6267 8 17 -1.7559 4.1755 1.6470 9 6 0.0238 4.8414 -0.2820 10 6 1.1155 4.6138 -1.0982 11 6 1.8100 3.4206 -1.0123 12 9 2.8768 3.1987 -1.8109 13 6 2.1976 -1.2687 -0.0006 14 1 3.2692 -1.0696 -0.0009 15 6 1.8278 -2.0706 -1.2502 16 7 2.0706 -1.2554 -2.4430 17 6 1.8101 -1.7667 -3.6863 18 1 1.4261 -2.7711 -3.7875 19 6 2.0406 -0.9946 -4.8166 20 7 2.5091 0.2293 -4.6931 21 14 1.6860 -1.6923 -6.5127 22 1 0.2480 -2.0503 -6.6099 23 1 2.0133 -0.6758 -7.5445 24 1 2.5140 -2.9053 -6.7319 25 6 1.8280 -2.0715 1.2483 26 6 1.1141 -3.4090 1.0428 27 6 2.5771 -3.3831 1.4924 28 1 -0.3632 0.0864 1.0240 29 1 -0.3634 0.8437 -0.5868 30 1 -0.3633 -0.9300 -0.4372 31 1 -0.0255 1.9293 1.4257 32 1 -0.5149 5.7747 -0.3531 33 1 1.4271 5.3690 -1.8045 34 1 2.4376 -2.9728 -1.2964 35 1 0.7740 -2.3460 -1.2065 36 1 2.4151 -0.3532 -2.3520 37 1 2.6698 0.7689 -5.4830 38 1 1.5493 -1.4812 2.1212 39 1 0.3657 -3.6986 1.7805 40 1 0.9081 -3.7173 0.0178 41 1 3.3329 -3.6742 0.7630 42 1 2.7911 -3.6556 2.5258 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755561721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = -5.671792 kcal Electronic energy + Delta-G solvation = -28072.222646 eV Core-core repulsion = 23994.597110 eV Total energy + Delta-G solvation = -4077.625535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.69768 -40.33523 -38.85394 -37.61361 -36.55737 -35.06702 -34.06392 -31.89342 -30.86147 -30.36818 -28.14093 -26.63708 -24.74856 -23.66620 -22.85208 -22.57286 -21.86150 -20.42899 -18.78723 -17.63909 -17.29900 -17.08867 -16.76696 -16.32476 -15.86449 -15.43975 -15.07133 -14.89601 -14.45579 -14.36685 -13.95221 -13.57322 -13.40900 -13.34980 -13.19737 -12.91622 -12.83067 -12.58665 -12.19859 -12.03580 -11.61050 -11.49950 -11.36413 -11.29738 -11.21478 -11.06406 -10.79532 -10.74415 -10.37580 -10.11774 -9.81954 -9.68814 -9.60099 -9.29399 -8.85487 -8.68756 -8.33882 -6.89774 -5.71152 -3.01689 0.63737 0.85271 1.83792 2.77183 3.04126 3.44535 3.45186 3.49135 3.50479 3.94744 4.12187 4.34082 4.50874 4.59546 4.76870 4.85160 4.96173 5.05707 5.11344 5.27925 5.34266 5.43305 5.44927 5.57002 5.59834 5.75000 5.76507 5.79339 5.83936 5.85633 5.93089 5.94878 6.02461 6.25067 6.26797 6.36022 6.44405 6.49236 6.65709 6.90542 7.59189 7.70436 8.36205 8.45171 9.56626 10.14061 10.49232 11.50287 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.004635 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.528813 B = 6039.348517 C = 7890.973710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.584 5.584 3 C 0.566 3.434 4 O -0.521 6.521 5 C -0.145 4.145 6 C -0.054 4.054 7 C -0.060 4.060 8 Cl -0.064 7.064 9 C -0.063 4.063 10 C -0.150 4.150 11 C 0.169 3.831 12 F -0.104 7.104 13 C 0.161 3.839 14 H 0.105 0.895 15 C 0.144 3.856 16 N -0.728 5.728 17 C -0.244 4.244 18 H 0.068 0.932 19 C -0.010 4.010 20 N -0.925 5.925 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.158 4.158 26 C -0.182 4.182 27 C -0.173 4.173 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.152 0.848 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.254 5.921 15.259 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.316 5.316 3 C 0.353 3.647 4 O -0.397 6.397 5 C -0.150 4.150 6 C -0.073 4.073 7 C -0.087 4.087 8 Cl -0.035 7.035 9 C -0.082 4.082 10 C -0.169 4.169 11 C 0.148 3.852 12 F -0.082 7.082 13 C 0.058 3.942 14 H 0.123 0.877 15 C 0.015 3.985 16 N -0.372 5.372 17 C -0.375 4.375 18 H 0.086 0.914 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.178 4.178 26 C -0.219 4.219 27 C -0.210 4.210 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.101 0.899 31 H 0.166 0.834 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.723 5.823 15.207 18.022 hybrid contribution -0.172 -0.082 -1.090 1.106 sum -7.895 5.741 14.118 17.164 Atomic orbital electron populations 1.21892 0.79620 1.04445 1.00425 1.47471 1.06964 1.05113 1.72016 1.17835 0.86917 0.83093 0.76874 1.90819 1.13068 1.86778 1.49030 1.19949 0.98571 0.96231 1.00215 1.21131 0.92145 0.95999 0.98007 1.20688 0.93542 0.96408 0.98037 1.98374 1.42138 1.95956 1.67065 1.20998 0.95409 0.98784 0.93040 1.21108 0.96741 0.96921 1.02121 1.17753 0.85266 0.93141 0.89035 1.91690 1.51776 1.94582 1.70160 1.20912 0.97921 0.81999 0.93343 0.87700 1.21116 0.97796 0.93553 0.85998 1.42301 1.78847 1.15746 1.00349 1.19119 1.36745 0.98031 0.83616 0.91365 1.24747 1.01910 0.96301 0.97682 1.69690 1.50532 1.08614 1.28481 0.86311 0.77848 0.77782 0.84460 1.21362 1.21711 1.21295 1.22568 1.05709 0.90090 0.99436 1.23195 0.94981 1.00438 1.03309 1.22955 0.95529 1.00418 1.02146 0.93065 0.91166 0.89932 0.83410 0.83692 0.83072 0.95310 0.95589 0.78028 0.93485 0.87843 0.89220 0.87488 0.88388 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 8.38 59.85 0.50 1.58 16 2 N -0.58 -9.84 2.24 -175.10 -0.39 -10.23 16 3 C 0.57 10.66 6.73 -12.40 -0.08 10.58 16 4 O -0.52 -11.68 15.95 5.30 0.08 -11.59 16 5 C -0.15 -2.32 4.93 -104.91 -0.52 -2.83 16 6 C -0.05 -0.65 7.53 -39.15 -0.29 -0.95 16 7 C -0.06 -0.65 6.31 -39.56 -0.25 -0.90 16 8 Cl -0.06 -0.60 28.95 -51.86 -1.50 -2.10 16 9 C -0.06 -0.64 9.82 -39.48 -0.39 -1.03 16 10 C -0.15 -1.82 10.01 -39.56 -0.40 -2.22 16 11 C 0.17 2.77 7.25 -38.96 -0.28 2.49 16 12 F -0.10 -2.13 16.49 2.25 0.04 -2.09 16 13 C 0.16 2.79 2.55 -67.93 -0.17 2.62 16 14 H 0.11 2.10 6.91 -51.93 -0.36 1.75 16 15 C 0.14 2.86 4.10 -4.04 -0.02 2.85 16 16 N -0.73 -18.80 5.43 -59.90 -0.33 -19.12 16 17 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 21 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C -0.16 -2.11 5.48 -90.62 -0.50 -2.60 16 26 C -0.18 -2.15 9.50 -26.69 -0.25 -2.41 16 27 C -0.17 -2.07 10.00 -26.69 -0.27 -2.34 16 28 H 0.05 0.53 7.04 -51.93 -0.37 0.16 16 29 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 30 H 0.08 1.16 6.53 -51.93 -0.34 0.82 16 31 H 0.15 1.52 6.21 -52.49 -0.33 1.20 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.03 0.58 7.59 -51.93 -0.39 0.19 16 35 H 0.03 0.50 5.59 -51.93 -0.29 0.21 16 36 H 0.39 10.90 7.06 -40.82 -0.29 10.61 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.39 5.80 -51.93 -0.30 1.09 16 41 H 0.10 1.25 7.98 -51.93 -0.41 0.84 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -33.74 364.72 -9.12 -42.87 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.06 Total: 9.61 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.16 Total: -2.56 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.01 Total: -57.22 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.74 -9.12 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755561721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds