Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00108 * 2 1 4 4 O 1.21565 * 119.99870 * 175.46887 * 3 2 1 5 5 C 1.47730 * 119.99550 * 355.47147 * 3 2 1 6 6 C 1.39654 * 120.11453 * 41.52151 * 5 3 2 7 7 C 1.37832 * 119.90170 * 180.02562 * 6 5 3 8 8 C 1.38641 * 120.13653 * 0.02562 * 7 6 5 9 9 F 1.35097 * 119.89052 * 179.97438 * 8 7 6 10 10 C 1.38741 * 120.22701 * 0.02562 * 8 7 6 11 11 Cl 1.73605 * 119.95366 * 179.97438 * 10 8 7 12 12 C 1.37966 * 120.09414 * 359.66920 * 10 8 7 13 13 C 1.46502 * 120.00112 * 179.97438 * 2 1 3 14 14 H 1.08997 * 109.46956 * 180.02562 * 13 2 1 15 15 C 1.52999 * 109.47598 * 300.00415 * 13 2 1 16 16 N 1.46500 * 109.46956 * 305.00168 * 15 13 2 17 17 C 1.36932 * 120.00104 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99941 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99892 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47539 * 59.99976 * 21 19 17 23 23 H 1.48500 * 109.47344 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47347 * 299.99861 * 21 19 17 25 25 C 1.53001 * 109.46889 * 60.00450 * 13 2 1 26 26 C 1.53002 * 117.50185 * 111.25139 * 25 13 2 27 27 C 1.53001 * 117.50149 * 179.91219 * 25 13 2 28 28 H 1.09004 * 109.47388 * 275.18227 * 1 2 3 29 29 H 1.08996 * 109.47223 * 35.18495 * 1 2 3 30 30 H 1.08999 * 109.47197 * 155.18180 * 1 2 3 31 31 H 1.07995 * 120.05055 * 0.02562 * 6 5 3 32 32 H 1.07998 * 119.93677 * 179.97438 * 7 6 5 33 33 H 1.08000 * 120.07385 * 180.32283 * 12 10 8 34 34 H 1.08998 * 109.46684 * 64.99535 * 15 13 2 35 35 H 1.08990 * 109.47189 * 184.99790 * 15 13 2 36 36 H 0.97005 * 119.99688 * 359.97438 * 16 15 13 37 37 H 0.96996 * 119.99842 * 180.02562 * 20 19 17 38 38 H 1.09003 * 115.55204 * 325.58460 * 25 13 2 39 39 H 1.08993 * 117.50155 * 215.00343 * 26 25 13 40 40 H 1.09003 * 117.49707 * 0.02562 * 26 25 13 41 41 H 1.09004 * 117.49485 * 359.97438 * 27 25 13 42 42 H 1.09000 * 117.50033 * 144.97208 * 27 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1688 0.0832 5 6 1.4036 2.4446 -0.1010 6 6 0.2181 2.6290 0.6137 7 6 -0.4647 3.8224 0.5158 8 6 0.0229 4.8391 -0.2909 9 9 -0.6506 6.0066 -0.3836 10 6 1.1996 4.6614 -1.0041 11 17 1.8033 5.9390 -2.0126 12 6 1.8939 3.4730 -0.9082 13 6 2.1975 -1.2687 0.0006 14 1 3.2691 -1.0695 0.0009 15 6 1.8279 -2.0706 1.2501 16 7 2.0706 -1.2554 2.4429 17 6 1.8112 -1.7671 3.6863 18 1 1.4273 -2.7715 3.7875 19 6 2.0416 -0.9949 4.8165 20 7 2.5099 0.2289 4.6931 21 14 1.6871 -1.6927 6.5126 22 1 2.5153 -2.9057 6.7320 23 1 2.0155 -0.6766 7.5446 24 1 0.2492 -2.0509 6.6100 25 6 1.8279 -2.0715 -1.2484 26 6 2.9088 -2.2554 -2.3156 27 6 2.4944 -3.4361 -1.4340 28 1 -0.3634 0.0928 1.0235 29 1 -0.3633 0.8399 -0.5921 30 1 -0.3633 -0.9327 -0.4313 31 1 -0.1632 1.8379 1.2421 32 1 -1.3817 3.9655 1.0679 33 1 2.8126 3.3370 -1.4595 34 1 0.7742 -2.3460 1.2064 35 1 2.4376 -2.9728 1.2963 36 1 2.4157 -0.3535 2.3519 37 1 2.6713 0.7683 5.4830 38 1 0.7979 -1.9640 -1.5887 39 1 2.5900 -2.2688 -3.3577 40 1 3.8834 -1.8047 -2.1277 41 1 3.1966 -3.7618 -0.6664 42 1 1.9029 -4.2266 -1.8959 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755566054.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = -7.627521 kcal Electronic energy + Delta-G solvation = -27491.939839 eV Core-core repulsion = 23414.229497 eV Total energy + Delta-G solvation = -4077.710342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.18676 -40.47573 -38.74240 -37.42309 -36.67517 -35.26063 -34.10481 -31.59247 -31.27181 -30.55613 -28.16583 -26.76773 -24.52678 -23.53325 -23.24889 -22.45060 -21.59228 -20.54077 -19.22004 -17.94031 -17.53132 -17.16532 -16.84664 -16.41698 -15.97137 -15.39871 -15.01659 -14.82445 -14.68260 -14.17817 -14.02936 -13.84321 -13.62805 -13.35289 -13.05053 -13.01916 -12.87672 -12.68327 -12.43118 -12.01927 -11.72104 -11.51122 -11.48435 -11.38645 -11.17698 -11.10569 -10.84688 -10.74210 -10.38098 -10.18784 -9.86272 -9.70053 -9.65190 -9.25208 -8.88522 -8.85060 -8.34819 -6.92416 -5.74786 -3.04786 0.52546 0.83716 1.75122 2.73474 3.08403 3.41752 3.42676 3.47613 3.48885 3.80658 3.88725 4.40248 4.45983 4.56230 4.75728 4.83908 4.92018 4.98911 5.03995 5.22334 5.29182 5.34401 5.50353 5.56218 5.57541 5.64032 5.69251 5.75089 5.77453 5.87235 5.95451 5.99436 6.02801 6.18397 6.20372 6.27285 6.37029 6.44651 6.68603 6.90509 7.57050 7.68527 8.35709 8.42529 9.54061 10.11855 10.47309 11.46990 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009403 B = 0.003871 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.061297 B = 7231.013624 C = 9309.920807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.586 5.586 3 C 0.564 3.436 4 O -0.524 6.524 5 C -0.115 4.115 6 C -0.051 4.051 7 C -0.147 4.147 8 C 0.125 3.875 9 F -0.126 7.126 10 C -0.083 4.083 11 Cl -0.049 7.049 12 C -0.033 4.033 13 C 0.163 3.837 14 H 0.102 0.898 15 C 0.149 3.851 16 N -0.729 5.729 17 C -0.242 4.242 18 H 0.069 0.931 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.169 4.169 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 4.288 -16.402 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.317 5.317 3 C 0.352 3.648 4 O -0.400 6.400 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.166 4.166 8 C 0.104 3.896 9 F -0.104 7.104 10 C -0.111 4.111 11 Cl -0.021 7.021 12 C -0.053 4.053 13 C 0.059 3.941 14 H 0.120 0.880 15 C 0.020 3.980 16 N -0.373 5.373 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.180 4.180 26 C -0.216 4.216 27 C -0.207 4.207 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.040 0.960 35 H 0.047 0.953 36 H 0.221 0.779 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.381 4.342 -16.304 18.039 hybrid contribution -0.265 0.291 0.980 1.056 sum -6.646 4.634 -15.325 17.335 Atomic orbital electron populations 1.22055 0.79946 1.02691 1.02345 1.47439 1.06814 1.05280 1.72203 1.17948 0.86992 0.83128 0.76753 1.90819 1.13353 1.86749 1.49103 1.19945 0.96333 0.95388 1.00181 1.21737 0.92141 0.97291 0.95755 1.21109 1.02666 0.92435 1.00351 1.17615 0.90712 0.83070 0.98175 1.91543 1.78918 1.45267 1.94679 1.20774 0.96593 0.92820 1.00866 1.98386 1.87335 1.49406 1.66928 1.20939 0.98633 0.89215 0.96473 1.20972 0.97857 0.81926 0.93298 0.87970 1.20931 0.97847 0.93480 0.85746 1.42305 1.78888 1.15812 1.00327 1.19144 1.36536 0.98032 0.83646 0.91336 1.24735 1.01970 0.96306 0.97691 1.69672 1.50742 1.08700 1.28544 0.86311 0.77862 0.77798 0.84426 1.21304 1.21721 1.21337 1.22549 0.98086 0.99543 0.97785 1.23025 0.99687 1.02948 0.95920 1.22932 1.03712 0.91094 1.02923 0.91249 0.91384 0.90791 0.82504 0.83079 0.83189 0.96026 0.95276 0.77931 0.93464 0.87605 0.89133 0.88652 0.88253 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.00 59.84 0.48 1.35 16 2 N -0.59 -9.07 2.24 -175.09 -0.39 -9.46 16 3 C 0.56 9.76 7.02 -12.38 -0.09 9.68 16 4 O -0.52 -11.05 16.28 5.31 0.09 -10.96 16 5 C -0.11 -1.65 5.15 -104.97 -0.54 -2.19 16 6 C -0.05 -0.64 7.61 -39.20 -0.30 -0.93 16 7 C -0.15 -1.61 10.01 -39.58 -0.40 -2.01 16 8 C 0.12 1.49 7.28 -39.25 -0.29 1.20 16 9 F -0.13 -1.52 16.83 2.25 0.04 -1.48 16 10 C -0.08 -1.02 6.32 -39.49 -0.25 -1.27 16 11 Cl -0.05 -0.57 28.60 -51.86 -1.48 -2.05 16 12 C -0.03 -0.44 9.43 -39.16 -0.37 -0.81 16 13 C 0.16 2.64 2.41 -67.93 -0.16 2.48 16 14 H 0.10 1.93 6.67 -51.93 -0.35 1.59 16 15 C 0.15 2.86 5.32 -4.04 -0.02 2.84 16 16 N -0.73 -18.13 5.43 -59.91 -0.33 -18.46 16 17 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 20 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.16 -1.99 5.12 -90.62 -0.46 -2.46 16 26 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 27 C -0.17 -1.90 9.80 -26.69 -0.26 -2.16 16 28 H 0.07 0.92 6.85 -51.93 -0.36 0.56 16 29 H 0.07 0.66 5.99 -51.93 -0.31 0.35 16 30 H 0.07 0.76 6.50 -51.93 -0.34 0.43 16 31 H 0.16 1.95 5.52 -52.49 -0.29 1.66 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 34 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 35 H 0.03 0.57 7.48 -51.93 -0.39 0.19 16 36 H 0.39 10.48 7.06 -40.82 -0.29 10.19 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.11 1.17 6.66 -51.93 -0.35 0.82 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 41 H 0.10 1.20 7.67 -51.93 -0.40 0.81 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 367.30 15.07 5.54 5.54 Total: -1.00 -32.37 367.30 -9.14 -41.51 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -5.12 Total: 9.37 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.18 Total: -3.79 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.01 Total: -55.30 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.37 -9.14 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755566054.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.880 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds