Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28721 * 125.32288 * 2 1 4 4 N 1.28982 * 108.99338 * 179.68823 * 3 2 1 5 5 C 1.34195 * 107.24627 * 0.43593 * 4 3 2 6 6 C 1.48007 * 126.69661 * 179.83465 * 5 4 3 7 7 O 1.21533 * 119.99823 * 179.68764 * 6 5 4 8 8 N 1.34774 * 119.99985 * 359.68539 * 6 5 4 9 9 C 1.47580 * 134.49408 * 179.97438 * 8 6 5 10 10 C 1.53944 * 86.11729 * 155.36013 * 9 8 6 11 11 C 1.53006 * 113.74195 * 137.95601 * 10 9 8 12 12 N 1.46504 * 109.46883 * 176.92578 * 11 10 9 13 13 C 1.34775 * 119.99531 * 179.97438 * 12 11 10 14 14 O 1.21279 * 120.00300 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99773 * 179.97438 * 13 12 11 16 16 S 1.80999 * 109.47016 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00065 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99828 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99910 * 179.97438 * 17 16 15 20 20 N 1.31636 * 119.99753 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00357 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47174 * 89.99298 * 21 19 17 23 23 H 1.48498 * 109.47245 * 209.99827 * 21 19 17 24 24 H 1.48501 * 109.47001 * 329.99938 * 21 19 17 25 25 C 1.47819 * 134.45430 * 359.86807 * 8 6 5 26 26 N 1.28872 * 125.32226 * 179.97438 * 2 1 3 27 27 H 1.09005 * 109.46981 * 270.03943 * 1 2 3 28 28 H 1.09003 * 109.47138 * 30.03706 * 1 2 3 29 29 H 1.09003 * 109.47423 * 150.04175 * 1 2 3 30 30 H 1.08993 * 113.76687 * 41.05916 * 9 8 6 31 31 H 1.09000 * 113.77166 * 269.66139 * 9 8 6 32 32 H 1.09004 * 113.74313 * 269.15053 * 10 9 8 33 33 H 1.09001 * 109.47002 * 296.92075 * 11 10 9 34 34 H 1.08993 * 109.46955 * 56.92512 * 11 10 9 35 35 H 0.96992 * 119.99966 * 359.97438 * 12 11 10 36 36 H 1.08998 * 109.47224 * 299.99707 * 15 13 12 37 37 H 1.08993 * 109.47046 * 60.00641 * 15 13 12 38 38 H 0.96998 * 119.99664 * 180.02562 * 20 19 17 39 39 H 1.09004 * 113.76829 * 90.37781 * 25 8 6 40 40 H 1.08995 * 113.83839 * 318.91250 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2092 1.0502 0.0000 4 7 3.4470 0.6876 0.0066 5 6 3.4685 -0.6542 0.0012 6 6 4.6692 -1.5195 0.0021 7 8 4.5468 -2.7286 0.0024 8 7 5.8983 -0.9665 0.0025 9 6 7.2735 -1.5023 0.0038 10 6 7.6835 -0.1641 -0.6373 11 6 8.9792 0.4194 -0.0699 12 7 9.3192 1.6475 -0.7926 13 6 10.4280 2.3388 -0.4620 14 8 11.1443 1.9440 0.4334 15 6 10.7781 3.6019 -1.2058 16 16 12.3108 4.2921 -0.5345 17 6 12.4776 5.7178 -1.5564 18 1 11.7404 5.9258 -2.3178 19 6 13.5565 6.5736 -1.3829 20 7 13.6814 7.6384 -2.1467 21 14 14.8321 6.2136 -0.0666 22 1 15.9114 5.3705 -0.6406 23 1 15.4097 7.4901 0.4253 24 1 14.1891 5.4938 1.0620 25 6 6.4095 0.4204 -0.0002 26 7 2.2100 -1.0515 0.0005 27 1 -0.3633 0.0007 1.0277 28 1 -0.3633 0.8897 -0.5144 29 1 -0.3634 -0.8904 -0.5132 30 1 7.4102 -2.3630 -0.6507 31 1 7.6843 -1.6555 1.0017 32 1 7.6641 -0.1753 -1.7271 33 1 8.8431 0.6460 0.9876 34 1 9.7851 -0.3052 -0.1855 35 1 8.7465 1.9631 -1.5090 36 1 10.9149 3.3749 -2.2631 37 1 9.9721 4.3265 -1.0910 38 1 14.4356 8.2362 -2.0257 39 1 6.5662 0.8328 0.9966 40 1 5.8578 1.0920 -0.6578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759232546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = 105.317353 kcal Electronic energy + Delta-G solvation = -25347.854311 eV Core-core repulsion = 21329.298045 eV Total energy + Delta-G solvation = -4018.556266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.93616 -40.85105 -39.26986 -38.27183 -35.78869 -34.60629 -33.70680 -32.43504 -31.39102 -29.80024 -28.96554 -26.81638 -26.41286 -25.59838 -24.82310 -23.45198 -21.49864 -20.65279 -19.98771 -18.46443 -18.16967 -17.88116 -17.26094 -16.82709 -16.72785 -16.35578 -15.48981 -15.45390 -14.96211 -14.62104 -14.58577 -14.27782 -14.08537 -13.90732 -13.70998 -13.43460 -13.22009 -13.06954 -12.80812 -12.76965 -12.49165 -11.95754 -11.78645 -11.68111 -11.64016 -11.26949 -11.22479 -11.00581 -10.94211 -10.70564 -10.58427 -9.85697 -9.56162 -9.27443 -9.04531 -8.98238 -8.50017 -6.91599 -6.28614 -4.00404 0.44670 0.93644 1.16285 2.05270 2.60024 2.74865 2.95560 3.18655 3.27241 3.33830 3.50808 3.53553 3.60505 3.91739 4.18160 4.19702 4.33418 4.39862 4.47606 4.50579 4.59847 4.71810 4.80368 4.92316 5.01163 5.09483 5.10518 5.14594 5.26926 5.35370 5.40731 5.45736 5.57456 5.76891 5.81459 6.01791 6.46440 6.97104 7.36253 7.56464 7.68426 7.94431 8.42048 8.46234 9.17604 10.80574 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.001785 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.453455 B =15683.818500 C =16711.459992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.133 5.133 3 N -0.053 5.053 4 N -0.249 5.249 5 C 0.132 3.868 6 C 0.639 3.361 7 O -0.510 6.510 8 N -0.628 5.628 9 C 0.127 3.873 10 C -0.137 4.137 11 C 0.132 3.868 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.519 6.519 15 C -0.125 4.125 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.111 3.889 26 N -0.248 5.248 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.401 0.599 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.097 0.903 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.164 -17.582 2.897 32.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.046 5.046 3 N -0.047 5.047 4 N -0.124 5.124 5 C -0.151 4.151 6 C 0.422 3.578 7 O -0.381 6.381 8 N -0.364 5.364 9 C 0.005 3.995 10 C -0.157 4.157 11 C 0.007 3.993 12 N -0.391 5.391 13 C 0.317 3.683 14 O -0.393 6.393 15 C -0.275 4.275 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.011 4.011 26 N -0.103 5.103 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.521 -18.323 4.357 32.529 hybrid contribution -0.533 0.408 -0.956 1.168 sum -27.055 -17.916 3.401 32.627 Atomic orbital electron populations 1.22606 0.68203 1.07430 1.06619 1.50287 1.11257 1.00594 1.42508 1.78989 0.96372 1.13941 1.15377 1.76197 1.10010 1.09984 1.16162 1.25143 0.92891 0.90346 1.06752 1.15584 0.79496 0.85143 0.77530 1.90873 1.84896 1.12730 1.49622 1.49655 1.03813 1.11083 1.71829 1.23260 0.76882 0.97395 1.01975 1.23470 0.94176 0.95951 1.02076 1.21205 0.94847 0.86743 0.96516 1.45919 1.27291 1.26437 1.39501 1.20274 0.79905 0.84684 0.83397 1.90708 1.49597 1.68758 1.30281 1.23280 1.04227 0.96820 1.03194 1.84794 1.26536 1.30484 1.49804 1.22319 1.14447 1.08626 1.21506 0.89364 1.24718 0.97088 0.93800 0.95730 1.69942 1.30649 1.12930 1.38164 0.86731 0.82599 0.78934 0.83565 1.19227 1.19971 1.15908 1.23610 0.91125 0.84106 1.02245 1.75087 1.02370 1.14473 1.18337 0.87462 0.86348 0.86645 0.88868 0.88375 0.86823 0.90814 0.90625 0.76496 0.88467 0.88370 0.91955 0.88453 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.09 11.62 59.84 0.70 0.79 16 2 N -0.13 -0.97 4.39 -16.65 -0.07 -1.04 16 3 N -0.05 -0.49 13.23 60.35 0.80 0.31 16 4 N -0.25 -2.61 10.99 32.10 0.35 -2.26 16 5 C 0.13 1.47 8.08 -156.24 -1.26 0.20 16 6 C 0.64 7.36 8.07 -12.26 -0.10 7.27 16 7 O -0.51 -7.33 17.83 5.34 0.10 -7.23 16 8 N -0.63 -5.48 3.61 -179.20 -0.65 -6.13 16 9 C 0.13 0.81 8.41 -2.97 -0.02 0.79 16 10 C -0.14 -0.81 3.93 -89.68 -0.35 -1.16 16 11 C 0.13 1.11 5.51 -4.04 -0.02 1.09 16 12 N -0.74 -7.84 5.56 -60.29 -0.33 -8.18 16 13 C 0.53 8.68 7.85 -10.98 -0.09 8.59 16 14 O -0.52 -10.55 15.86 5.56 0.09 -10.47 16 15 C -0.12 -2.28 6.16 36.01 0.22 -2.06 16 16 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 17 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 20 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 21 Si 0.86 21.59 27.74 -169.99 -4.72 16.87 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 25 C 0.11 0.76 7.49 -2.82 -0.02 0.74 16 26 N -0.25 -2.54 12.16 32.11 0.39 -2.15 16 27 H 0.11 -0.08 8.14 -51.93 -0.42 -0.51 16 28 H 0.12 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.12 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.16 8.47 -40.82 -0.35 2.81 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.10 0.64 7.92 -51.93 -0.41 0.23 16 40 H 0.10 0.67 7.52 -51.93 -0.39 0.28 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -39.54 368.86 -5.38 -44.92 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.94 Total: -3.49 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.74 Total: 4.39 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 1.26 Total: -45.02 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.18 Total: -17.70 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.87 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.54 -5.38 -44.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759232546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.238 kcal (2) G-P(sol) polarization free energy of solvation -39.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds