Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86807 * 119.99951 * 2 1 4 4 H 1.48500 * 109.47307 * 240.00461 * 3 2 1 5 5 H 1.48498 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46653 * 120.00164 * 3 2 1 7 7 C 1.38650 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00135 * 185.01626 * 9 7 2 11 11 C 1.38902 * 120.06886 * 354.54812 * 10 9 7 12 12 C 1.38085 * 119.92982 * 179.67575 * 11 10 9 13 13 C 1.38321 * 120.06781 * 0.62965 * 12 11 10 14 14 C 1.38279 * 120.13768 * 359.67119 * 13 12 11 15 15 C 1.50707 * 119.96567 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47060 * 269.97989 * 15 14 13 17 17 O 1.21297 * 119.99887 * 5.02020 * 16 15 14 18 18 N 1.34770 * 120.00329 * 185.02188 * 16 15 14 19 19 C 1.47376 * 121.23489 * 353.97833 * 18 16 15 20 20 C 1.53140 * 107.88420 * 221.91687 * 19 18 16 21 21 O 1.43033 * 109.02869 * 302.13387 * 20 19 18 22 22 C 1.35427 * 117.65627 * 49.06398 * 21 20 19 23 23 C 1.39002 * 120.66349 * 160.15229 * 22 21 20 24 24 C 1.38167 * 118.89530 * 179.68737 * 23 22 21 25 25 N 1.31937 * 121.12657 * 359.94575 * 24 23 22 26 26 C 1.32106 * 121.93385 * 0.10583 * 25 24 23 27 27 C 1.38305 * 120.34676 * 359.97438 * 26 25 24 28 28 C 1.38117 * 120.07375 * 0.02562 * 14 13 12 29 29 H 0.97002 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03228 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96502 * 180.31902 * 12 11 10 32 32 H 1.08000 * 119.93214 * 179.69622 * 13 12 11 33 33 H 1.09004 * 109.46693 * 29.97638 * 15 14 13 34 34 H 1.08999 * 109.47427 * 149.97716 * 15 14 13 35 35 H 1.09006 * 109.81473 * 341.55719 * 19 18 16 36 36 H 1.09003 * 109.81481 * 102.45921 * 19 18 16 37 37 H 1.09002 * 109.61355 * 182.20206 * 20 19 18 38 38 H 1.09003 * 109.48658 * 61.99232 * 20 19 18 39 39 H 1.07999 * 120.55445 * 359.68729 * 23 22 21 40 40 H 1.07994 * 119.43773 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.82908 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.04262 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1047 11 6 3.4575 -3.4393 0.0921 12 6 4.2027 -4.5962 0.2061 13 6 3.5690 -5.8204 0.3195 14 6 2.1879 -5.8893 0.3261 15 6 1.5015 -7.2252 0.4505 16 6 1.2721 -7.8019 -0.9227 17 8 1.7108 -7.2334 -1.9003 18 7 0.5794 -8.9492 -1.0648 19 6 0.1473 -9.7311 0.1074 20 6 0.3850 -11.2120 -0.2016 21 8 -0.3392 -11.5639 -1.3838 22 6 -0.2051 -10.7603 -2.4656 23 6 -0.5212 -11.2246 -3.7371 24 6 -0.3769 -10.3715 -4.8143 25 7 0.0518 -9.1343 -4.6520 26 6 0.3640 -8.6535 -3.4618 27 6 0.2475 -9.4471 -2.3350 28 6 1.4369 -4.7352 0.2187 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4841 -0.0010 31 1 5.2815 -4.5456 0.2015 32 1 4.1540 -6.7244 0.4036 33 1 2.1286 -7.9034 1.0293 34 1 0.5439 -7.0961 0.9550 35 1 0.7288 -9.4384 0.9816 36 1 -0.9131 -9.5613 0.2942 37 1 0.0379 -11.8204 0.6337 38 1 1.4495 -11.3840 -0.3608 39 1 -0.8738 -12.2353 -3.8806 40 1 -0.6197 -10.7232 -5.8061 41 1 0.7113 -7.6352 -3.3679 42 1 0.3583 -4.7896 0.2243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089823253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -13.937669 kcal Electronic energy + Delta-G solvation = -28367.511614 eV Core-core repulsion = 24279.587703 eV Total energy + Delta-G solvation = -4087.923911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85509 -39.76767 -38.81624 -38.75730 -36.59207 -35.74486 -32.67837 -32.24737 -32.06189 -31.01856 -29.42363 -28.97783 -27.09699 -25.30765 -25.11721 -24.06096 -22.23611 -21.67872 -21.03185 -19.78857 -18.83357 -17.84832 -17.76748 -17.45757 -16.88752 -16.45977 -16.06328 -15.54323 -15.14501 -14.99503 -14.83363 -14.52769 -14.50267 -14.31286 -14.08978 -13.77691 -13.59060 -13.40940 -13.32077 -12.73367 -12.50105 -12.46277 -12.02570 -11.99471 -11.83458 -11.60075 -11.27753 -10.86323 -10.81214 -10.67549 -10.65954 -10.46059 -9.90995 -9.61765 -9.35270 -9.21511 -8.82983 -8.28295 -8.12129 -7.24040 -6.43483 -4.02780 0.87384 1.03912 1.93385 2.31206 2.39418 2.42589 2.75710 3.14392 3.15334 3.18094 3.66924 3.93078 3.97524 4.04817 4.32512 4.41375 4.46895 4.53402 4.67650 4.72664 4.84613 4.93264 5.02527 5.02892 5.10935 5.14102 5.34144 5.36796 5.50560 5.56187 5.70232 5.79289 5.89558 5.93086 6.14739 6.30517 6.47091 6.60879 6.79856 6.87318 6.91002 7.05533 7.20763 7.34829 7.42502 7.77832 7.79872 7.95977 8.01040 9.02016 9.71722 10.74528 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002453 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.365058 B =11411.820963 C =12064.174849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.155 3.845 11 C -0.227 4.227 12 C -0.074 4.074 13 C -0.194 4.194 14 C -0.039 4.039 15 C -0.087 4.087 16 C 0.520 3.480 17 O -0.488 6.488 18 N -0.561 5.561 19 C 0.063 3.937 20 C 0.047 3.953 21 O -0.306 6.306 22 C 0.128 3.872 23 C -0.183 4.183 24 C 0.102 3.898 25 N -0.481 5.481 26 C 0.110 3.890 27 C 0.033 3.967 28 C -0.175 4.175 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.162 0.838 41 H 0.193 0.807 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -23.927 1.419 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.101 3.899 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.213 4.213 14 C -0.040 4.040 15 C -0.127 4.127 16 C 0.310 3.690 17 O -0.360 6.360 18 N -0.288 5.288 19 C -0.060 4.060 20 C -0.029 4.029 21 O -0.218 6.218 22 C 0.073 3.927 23 C -0.204 4.204 24 C -0.055 4.055 25 N -0.192 5.192 26 C -0.048 4.048 27 C -0.064 4.064 28 C -0.194 4.194 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.110 0.890 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.179 0.821 41 H 0.210 0.790 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.200 -22.959 0.267 22.961 hybrid contribution 0.492 0.264 0.946 1.098 sum 0.692 -22.695 1.213 22.738 Atomic orbital electron populations 1.70027 1.05955 1.27759 1.46087 1.25276 0.95834 0.98798 0.96547 0.85789 0.78709 0.79801 0.79185 1.19476 1.20279 1.19519 1.21271 0.91767 0.80818 1.52985 0.89134 1.83975 1.34232 1.11387 1.78527 1.19260 0.90242 0.87961 0.92411 1.21205 0.93832 0.99061 1.10583 1.20684 0.98447 0.92270 0.97792 1.20323 0.93153 0.96935 1.10902 1.18579 0.93283 0.91356 1.00787 1.20617 1.02972 0.96175 0.92913 1.21111 0.76309 0.78700 0.92871 1.90636 1.46692 1.58428 1.40230 1.45879 1.54578 1.23924 1.04440 1.22678 1.02883 0.91422 0.89023 1.23315 0.97357 0.95411 0.86834 1.85974 1.66354 1.49668 1.19794 1.18752 0.98698 0.87086 0.88171 1.21471 1.06893 1.02581 0.89450 1.22687 0.95056 0.89148 0.98635 1.67957 1.11684 1.14555 1.25019 1.23736 0.94495 1.01407 0.85158 1.19105 1.06351 0.93220 0.87695 1.19931 0.99040 0.89976 1.10489 0.91982 0.85528 0.87386 0.87947 0.87878 0.87776 0.86796 0.88953 0.85451 0.90799 0.83766 0.82079 0.79030 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.07 9.49 30.88 0.29 -10.77 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 9 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 10 C 0.15 3.79 6.65 -39.10 -0.26 3.53 16 11 C -0.23 -5.02 9.17 -39.39 -0.36 -5.38 16 12 C -0.07 -1.37 10.04 -39.61 -0.40 -1.77 16 13 C -0.19 -3.35 9.70 -39.54 -0.38 -3.73 16 14 C -0.04 -0.68 4.38 -104.65 -0.46 -1.14 16 15 C -0.09 -1.05 4.32 -29.03 -0.13 -1.17 16 16 C 0.52 7.26 7.59 -10.99 -0.08 7.17 16 17 O -0.49 -8.89 13.00 5.54 0.07 -8.82 16 18 N -0.56 -6.45 3.02 -112.54 -0.34 -6.79 16 19 C 0.06 0.42 6.38 -3.49 -0.02 0.39 16 20 C 0.05 0.27 7.16 37.23 0.27 0.54 16 21 O -0.31 -2.87 10.35 -17.97 -0.19 -3.06 16 22 C 0.13 1.45 6.54 -38.82 -0.25 1.20 16 23 C -0.18 -1.82 10.08 -39.32 -0.40 -2.22 16 24 C 0.10 1.11 11.16 -17.53 -0.20 0.92 16 25 N -0.48 -6.96 10.36 -13.17 -0.14 -7.09 16 26 C 0.11 1.68 10.14 -17.41 -0.18 1.51 16 27 C 0.03 0.43 6.32 -83.42 -0.53 -0.09 16 28 C -0.17 -3.69 9.65 -39.39 -0.38 -4.07 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 2.79 5.64 -52.48 -0.30 2.49 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.10 0.88 7.54 -51.93 -0.39 0.48 16 34 H 0.10 1.03 8.04 -51.93 -0.42 0.61 16 35 H 0.11 0.43 6.43 -51.93 -0.33 0.10 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.19 3.35 5.25 -52.49 -0.28 3.07 16 42 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -35.92 356.43 -7.55 -43.47 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.51 Total: 5.23 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -3.56 Total: -14.09 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.28 Total: -38.64 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.11 Total: -17.00 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.92 -7.55 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089823253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds