Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86807 * 119.99951 * 2 1 4 4 H 1.48500 * 109.47307 * 240.00461 * 3 2 1 5 5 H 1.48498 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46653 * 120.00164 * 3 2 1 7 7 C 1.38650 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99974 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00135 * 185.01626 * 9 7 2 11 11 C 1.38902 * 120.06886 * 354.54812 * 10 9 7 12 12 C 1.38085 * 119.92982 * 179.67575 * 11 10 9 13 13 C 1.38321 * 120.06781 * 0.62965 * 12 11 10 14 14 C 1.38279 * 120.13768 * 359.67119 * 13 12 11 15 15 C 1.50707 * 119.96567 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47060 * 269.97989 * 15 14 13 17 17 O 1.21297 * 119.99887 * 5.02020 * 16 15 14 18 18 N 1.34770 * 120.00329 * 185.02188 * 16 15 14 19 19 C 1.47376 * 121.23489 * 353.97833 * 18 16 15 20 20 C 1.53140 * 107.88420 * 221.91687 * 19 18 16 21 21 O 1.43033 * 109.02869 * 302.13387 * 20 19 18 22 22 C 1.35427 * 117.65627 * 49.06398 * 21 20 19 23 23 C 1.39002 * 120.66349 * 160.15229 * 22 21 20 24 24 C 1.38167 * 118.89530 * 179.68737 * 23 22 21 25 25 N 1.31937 * 121.12657 * 359.94575 * 24 23 22 26 26 C 1.32106 * 121.93385 * 0.10583 * 25 24 23 27 27 C 1.38305 * 120.34676 * 359.97438 * 26 25 24 28 28 C 1.38117 * 120.07375 * 0.02562 * 14 13 12 29 29 H 0.97002 * 120.00220 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03228 * 0.02562 * 11 10 9 31 31 H 1.07995 * 119.96502 * 180.31902 * 12 11 10 32 32 H 1.08000 * 119.93214 * 179.69622 * 13 12 11 33 33 H 1.09004 * 109.46693 * 29.97638 * 15 14 13 34 34 H 1.08999 * 109.47427 * 149.97716 * 15 14 13 35 35 H 1.09006 * 109.81473 * 341.55719 * 19 18 16 36 36 H 1.09003 * 109.81481 * 102.45921 * 19 18 16 37 37 H 1.09002 * 109.61355 * 182.20206 * 20 19 18 38 38 H 1.09003 * 109.48658 * 61.99232 * 20 19 18 39 39 H 1.07999 * 120.55445 * 359.68729 * 23 22 21 40 40 H 1.07994 * 119.43773 * 179.97438 * 24 23 22 41 41 H 1.08004 * 119.82908 * 180.02562 * 26 25 24 42 42 H 1.07999 * 120.04262 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6966 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5046 0.1047 11 6 3.4575 -3.4393 0.0921 12 6 4.2027 -4.5962 0.2061 13 6 3.5690 -5.8204 0.3195 14 6 2.1879 -5.8893 0.3261 15 6 1.5015 -7.2252 0.4505 16 6 1.2721 -7.8019 -0.9227 17 8 1.7108 -7.2334 -1.9003 18 7 0.5794 -8.9492 -1.0648 19 6 0.1473 -9.7311 0.1074 20 6 0.3850 -11.2120 -0.2016 21 8 -0.3392 -11.5639 -1.3838 22 6 -0.2051 -10.7603 -2.4656 23 6 -0.5212 -11.2246 -3.7371 24 6 -0.3769 -10.3715 -4.8143 25 7 0.0518 -9.1343 -4.6520 26 6 0.3640 -8.6535 -3.4618 27 6 0.2475 -9.4471 -2.3350 28 6 1.4369 -4.7352 0.2187 29 1 -0.4850 0.8400 0.0004 30 1 3.9529 -2.4841 -0.0010 31 1 5.2815 -4.5456 0.2015 32 1 4.1540 -6.7244 0.4036 33 1 2.1286 -7.9034 1.0293 34 1 0.5439 -7.0961 0.9550 35 1 0.7288 -9.4384 0.9816 36 1 -0.9131 -9.5613 0.2942 37 1 0.0379 -11.8204 0.6337 38 1 1.4495 -11.3840 -0.3608 39 1 -0.8738 -12.2353 -3.8806 40 1 -0.6197 -10.7232 -5.8061 41 1 0.7113 -7.6352 -3.3679 42 1 0.3583 -4.7896 0.2243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089823253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -39.153044 kcal Electronic energy + Delta-G solvation = -28368.605035 eV Core-core repulsion = 24279.587703 eV Total energy + Delta-G solvation = -4089.017331 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.70421 -41.01443 -40.31653 -39.55330 -38.26096 -36.67970 -34.37522 -33.75190 -32.93930 -31.94556 -30.92519 -30.01509 -28.34379 -27.26281 -25.84895 -25.04943 -23.36545 -23.12846 -22.39011 -20.82786 -19.66009 -19.42755 -18.82037 -18.72549 -18.27496 -17.32621 -17.02797 -16.71131 -16.43297 -16.20301 -16.13464 -15.79786 -15.58074 -15.48864 -15.33906 -14.99027 -14.92086 -14.55322 -14.31363 -14.22044 -13.96335 -13.62210 -13.33000 -12.97441 -12.94483 -12.61422 -12.56285 -12.47749 -12.40250 -12.24742 -12.14376 -11.48138 -11.22338 -10.97237 -10.80179 -10.56674 -10.02983 -9.67566 -9.19655 -8.99709 -8.47881 -6.16577 -0.04538 0.14949 0.45798 0.74094 1.33240 1.40720 1.43841 1.47567 1.49831 2.10189 2.16994 2.75184 2.79547 3.10061 3.26454 3.38171 3.42639 3.58801 3.68014 3.79337 3.95944 4.00128 4.04970 4.08056 4.21413 4.28860 4.36029 4.50373 4.54301 4.56898 4.61558 4.67734 4.72207 4.72609 4.86145 5.03514 5.11337 5.13109 5.27879 5.58702 5.62344 5.70252 5.73005 5.93323 6.01522 6.10740 6.22870 6.81172 6.96622 7.01693 7.77798 8.75397 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018021 B = 0.002453 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.365058 B =11411.820963 C =12064.174849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.111 3.889 11 C -0.245 4.245 12 C -0.074 4.074 13 C -0.176 4.176 14 C -0.030 4.030 15 C -0.082 4.082 16 C 0.516 3.484 17 O -0.545 6.545 18 N -0.556 5.556 19 C 0.052 3.948 20 C 0.042 3.958 21 O -0.309 6.309 22 C 0.132 3.868 23 C -0.175 4.175 24 C 0.100 3.900 25 N -0.516 5.516 26 C 0.079 3.921 27 C 0.019 3.981 28 C -0.192 4.192 29 H 0.273 0.727 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.100 0.900 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.179 0.821 40 H 0.195 0.805 41 H 0.160 0.840 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -28.054 3.125 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.092 4.092 13 C -0.194 4.194 14 C -0.030 4.030 15 C -0.121 4.121 16 C 0.308 3.692 17 O -0.421 6.421 18 N -0.283 5.283 19 C -0.068 4.068 20 C -0.033 4.033 21 O -0.221 6.221 22 C 0.076 3.924 23 C -0.195 4.195 24 C -0.058 4.058 25 N -0.228 5.228 26 C -0.079 4.079 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.168 0.832 36 H 0.119 0.881 37 H 0.187 0.813 38 H 0.096 0.904 39 H 0.197 0.803 40 H 0.211 0.789 41 H 0.176 0.824 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.694 -27.175 2.020 27.303 hybrid contribution 0.084 1.080 0.427 1.165 sum 1.778 -26.095 2.446 26.270 Atomic orbital electron populations 1.70180 1.08036 1.28847 1.48959 1.26599 0.96868 1.02739 0.95847 0.84655 0.77414 0.74245 0.79933 1.18420 1.19498 1.17876 1.21779 0.92487 0.81505 1.53334 0.88242 1.83934 1.35909 1.12584 1.81686 1.19881 0.91649 0.87954 0.94373 1.21322 0.93165 1.00316 1.11599 1.21137 1.00243 0.91518 0.96296 1.20968 0.93437 0.98013 1.06969 1.19104 0.93735 0.92538 0.97643 1.20751 1.04876 0.93834 0.92605 1.21409 0.75991 0.79028 0.92780 1.90648 1.49345 1.60158 1.41945 1.45947 1.53427 1.23560 1.05335 1.23160 1.04086 0.91347 0.88236 1.23727 0.97624 0.95421 0.86532 1.85985 1.66739 1.49171 1.20172 1.18910 0.97606 0.86416 0.89464 1.21870 1.05267 1.03742 0.88637 1.23268 0.93877 0.87998 1.00645 1.67861 1.13107 1.16684 1.25143 1.23307 0.96890 1.00908 0.86776 1.19120 1.06912 0.94003 0.87801 1.20223 0.99292 0.90462 1.11143 0.91841 0.86519 0.83748 0.83344 0.82602 0.85267 0.83155 0.88135 0.81261 0.90416 0.80348 0.78871 0.82369 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.06 13.67 21.61 0.30 -57.76 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 3 Si 1.02 44.04 29.55 68.60 2.03 46.06 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.41 -25.01 9.49 67.92 0.64 -24.37 16 8 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 9 O -0.23 -14.65 9.76 -22.72 -0.22 -14.87 16 10 C 0.11 5.79 6.65 22.58 0.15 5.94 16 11 C -0.24 -11.14 9.17 22.39 0.21 -10.94 16 12 C -0.07 -2.62 10.04 22.25 0.22 -2.40 16 13 C -0.18 -5.46 9.70 22.30 0.22 -5.24 16 14 C -0.03 -0.97 4.38 -19.88 -0.09 -1.06 16 15 C -0.08 -1.67 4.32 29.10 0.13 -1.54 16 16 C 0.52 13.69 7.59 87.66 0.67 14.35 16 17 O -0.54 -20.41 13.00 -3.08 -0.04 -20.45 16 18 N -0.56 -11.70 3.02 -628.35 -1.90 -13.59 16 19 C 0.05 0.47 6.38 86.26 0.55 1.02 16 20 C 0.04 0.29 7.16 72.03 0.52 0.80 16 21 O -0.31 -4.63 10.35 -87.23 -0.90 -5.53 16 22 C 0.13 2.70 6.54 22.76 0.15 2.85 16 23 C -0.17 -3.04 10.08 22.44 0.23 -2.81 16 24 C 0.10 2.05 11.16 84.66 0.95 2.99 16 25 N -0.52 -15.45 10.36 -195.59 -2.03 -17.48 16 26 C 0.08 2.54 10.14 84.67 0.86 3.40 16 27 C 0.02 0.48 6.32 38.09 0.24 0.72 16 28 C -0.19 -8.39 9.65 22.39 0.22 -8.18 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 31 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 33 H 0.16 1.57 7.54 -2.38 -0.02 1.55 16 34 H 0.13 2.06 8.04 -2.39 -0.02 2.04 16 35 H 0.15 0.20 6.43 -2.38 -0.02 0.19 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.17 -0.22 8.14 -2.39 -0.02 -0.23 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 40 H 0.19 2.47 8.06 -2.91 -0.02 2.44 16 41 H 0.16 6.15 5.25 -2.92 -0.02 6.13 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -90.53 356.43 4.62 -85.91 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.08 Total: 23.07 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 6.31 Total: -25.36 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -3.63 Total: -88.84 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -1.16 Total: -40.85 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -90.53 4.62 -85.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089823253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.755 kcal (2) G-P(sol) polarization free energy of solvation -90.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds