Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48496 * 109.47226 * 270.00017 * 3 2 1 5 5 H 1.48503 * 109.46991 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.47366 * 149.99601 * 3 2 1 7 7 C 1.38722 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99535 * 0.02562 * 7 2 1 9 9 O 1.34775 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00328 * 185.06096 * 9 7 2 11 11 C 1.39186 * 119.89530 * 354.44459 * 10 9 7 12 12 C 1.37594 * 120.10273 * 179.74679 * 11 10 9 13 13 C 1.40026 * 119.89669 * 0.25351 * 12 11 10 14 14 C 1.46960 * 120.10276 * 180.02562 * 13 12 11 15 15 C 1.35019 * 119.99964 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99951 * 180.02562 * 15 14 13 17 17 O 1.21723 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00203 * 179.97438 * 16 15 14 19 19 O 1.41604 * 119.99906 * 179.97438 * 18 16 15 20 20 C 1.42907 * 113.99733 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47043 * 180.02562 * 20 19 18 22 22 C 1.38679 * 120.41851 * 269.72759 * 21 20 19 23 23 C 1.38624 * 118.42024 * 179.78169 * 22 21 20 24 24 C 1.38227 * 119.15855 * 0.51082 * 23 22 21 25 25 N 1.31852 * 120.76499 * 359.72692 * 24 23 22 26 26 C 1.31881 * 121.72800 * 359.97438 * 25 24 23 27 27 C 1.40025 * 119.79857 * 359.97438 * 13 12 11 28 28 C 1.37597 * 119.89768 * 0.02562 * 27 13 12 29 29 H 0.97001 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.94523 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.05578 * 180.26865 * 12 11 10 32 32 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 33 33 H 1.07994 * 120.00582 * 359.97438 * 15 14 13 34 34 H 0.97000 * 120.00437 * 359.97438 * 18 16 15 35 35 H 1.08995 * 109.47161 * 300.00626 * 20 19 18 36 36 H 1.09003 * 109.46890 * 60.00472 * 20 19 18 37 37 H 1.07999 * 120.78971 * 0.02562 * 22 21 20 38 38 H 1.07999 * 120.42256 * 180.21535 * 23 22 21 39 39 H 1.08005 * 119.61544 * 179.74473 * 24 23 22 40 40 H 1.07998 * 119.62158 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.05154 * 179.97438 * 27 13 12 42 42 H 1.08004 * 119.94803 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4685 -2.1367 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4047 -0.1050 11 6 3.2167 -3.5738 -0.0913 12 6 3.8366 -4.7971 -0.2039 13 6 5.2297 -4.8649 -0.3270 14 6 5.8964 -6.1690 -0.4481 15 6 7.2399 -6.2319 -0.5663 16 6 7.9034 -7.5298 -0.6874 17 8 7.2442 -8.5531 -0.6812 18 7 9.2444 -7.5927 -0.8058 19 8 9.8867 -8.8493 -0.9225 20 6 11.3084 -8.7665 -1.0413 21 6 11.8842 -10.1541 -1.1593 22 6 12.2606 -10.8569 -0.0245 23 6 12.7814 -12.1321 -0.1808 24 6 12.9171 -12.6528 -1.4540 25 7 12.5531 -11.9536 -2.5110 26 6 12.0486 -10.7402 -2.3997 27 6 5.9857 -3.6863 -0.3355 28 6 5.3572 -2.4675 -0.2224 29 1 -0.4850 0.8401 0.0004 30 1 2.1422 -3.5205 0.0033 31 1 3.2495 -5.7036 -0.1975 32 1 5.3117 -7.0770 -0.4418 33 1 7.8247 -5.3241 -0.5722 34 1 9.7696 -6.7772 -0.8111 35 1 11.5657 -8.1899 -1.9297 36 1 11.7188 -8.2763 -0.1585 37 1 12.1471 -10.4226 0.9577 38 1 13.0817 -12.7095 0.6811 39 1 13.3259 -13.6440 -1.5845 40 1 11.7621 -10.1977 -3.2885 41 1 7.0606 -3.7338 -0.4299 42 1 5.9396 -1.5579 -0.2285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152365357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = 27.277841 kcal Electronic energy + Delta-G solvation = -25859.902796 eV Core-core repulsion = 21773.766124 eV Total energy + Delta-G solvation = -4086.136672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70284 -39.60277 -39.27587 -37.59792 -37.01064 -33.77659 -33.33388 -32.59315 -32.44819 -31.51407 -30.57111 -28.42733 -26.85680 -25.66368 -24.10710 -23.39436 -22.64411 -22.34551 -21.02500 -19.54870 -18.45969 -17.98628 -17.63977 -17.41827 -17.19312 -17.08172 -15.86305 -15.53837 -15.20194 -15.02072 -14.66160 -14.26664 -14.21897 -14.20381 -14.08571 -14.00028 -13.79790 -13.59075 -13.15945 -12.89268 -12.67929 -12.44646 -12.22594 -11.95586 -11.88196 -11.49567 -11.25859 -11.05406 -10.81196 -10.38957 -10.31207 -10.05753 -9.91732 -9.73291 -9.62496 -9.58982 -9.11495 -8.95344 -8.51453 -7.30410 -6.64020 -4.27631 0.42935 0.74836 0.90041 1.76298 1.99601 2.41349 3.09249 3.13255 3.26059 3.28767 3.43648 3.89075 4.05612 4.16715 4.19371 4.31604 4.38072 4.42332 4.48009 4.58287 4.69900 4.78764 4.84506 4.90434 5.05530 5.08764 5.23074 5.37802 5.43001 5.53889 5.56041 5.66789 5.89423 5.95403 6.13610 6.24430 6.27761 6.45709 6.56048 6.62107 6.87047 7.04070 7.09242 7.23987 7.37372 7.44312 7.58925 7.80158 8.24682 8.69014 9.28780 10.42073 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.042061 B = 0.001375 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.547679 B =20361.126334 C =20726.515323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.200 6.200 10 C 0.174 3.826 11 C -0.230 4.230 12 C -0.034 4.034 13 C -0.193 4.193 14 C 0.047 3.953 15 C -0.274 4.274 16 C 0.569 3.431 17 O -0.537 6.537 18 N -0.601 5.601 19 O -0.141 6.141 20 C 0.079 3.921 21 C -0.143 4.143 22 C -0.050 4.050 23 C -0.176 4.176 24 C 0.107 3.893 25 N -0.487 5.487 26 C 0.126 3.874 27 C -0.044 4.044 28 C -0.200 4.200 29 H 0.284 0.716 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.120 0.880 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.974 -15.586 -0.425 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.129 0.871 9 O -0.103 6.103 10 C 0.119 3.881 11 C -0.249 4.249 12 C -0.052 4.052 13 C -0.194 4.194 14 C 0.027 3.973 15 C -0.295 4.295 16 C 0.362 3.638 17 O -0.414 6.414 18 N -0.303 5.303 19 O -0.145 6.145 20 C 0.001 3.999 21 C -0.147 4.147 22 C -0.076 4.076 23 C -0.195 4.195 24 C -0.049 4.049 25 N -0.195 5.195 26 C -0.031 4.031 27 C -0.062 4.062 28 C -0.219 4.219 29 H 0.094 0.906 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.138 0.862 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 24.335 -16.478 -1.229 29.415 hybrid contribution 0.611 1.466 0.876 1.814 sum 24.946 -15.012 -0.352 29.117 Atomic orbital electron populations 1.69615 1.05724 1.29053 1.45644 1.24543 0.95079 0.99115 0.95145 0.86157 0.80380 0.81078 0.79220 1.19608 1.20476 1.18192 1.20893 0.76608 0.96969 1.52237 0.87134 1.83500 1.23005 1.26247 1.77552 1.19379 0.91774 0.85344 0.91553 1.21227 1.01424 0.91655 1.10619 1.21050 0.93015 0.97134 0.94010 1.18477 0.93426 0.91814 1.15697 1.22307 0.93603 0.96604 0.84763 1.22093 0.95687 0.94372 1.17371 1.18470 0.78957 0.90543 0.75875 1.90824 1.63736 1.36360 1.50487 1.47516 1.05418 0.98687 1.78718 1.90673 1.17918 1.09481 1.96453 1.21628 0.81632 0.94288 1.02346 1.20377 1.02516 0.96655 0.95111 1.21582 0.93419 0.93823 0.98758 1.22196 1.01554 0.96418 0.99373 1.22916 0.94536 0.99393 0.88093 1.67778 1.10657 1.07003 1.34050 1.22770 0.92832 0.90900 0.96629 1.20880 0.98515 0.91053 0.95739 1.20139 0.91795 0.98046 1.11915 0.90596 0.84450 0.86412 0.85501 0.85403 0.75286 0.90717 0.90915 0.84399 0.84279 0.82386 0.82399 0.86182 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.54 13.96 55.48 0.77 -22.77 16 2 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 20.23 28.62 -169.99 -4.86 15.36 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.39 -10.32 9.94 30.91 0.31 -10.01 16 8 H 0.11 2.96 5.41 -52.48 -0.28 2.68 16 9 O -0.20 -4.89 8.57 0.76 0.01 -4.89 16 10 C 0.17 3.69 6.66 -38.88 -0.26 3.43 16 11 C -0.23 -4.56 9.14 -39.46 -0.36 -4.92 16 12 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 13 C -0.19 -2.99 5.87 -105.03 -0.62 -3.61 16 14 C 0.05 0.65 9.45 -37.19 -0.35 0.30 16 15 C -0.27 -3.32 9.41 -37.50 -0.35 -3.67 16 16 C 0.57 7.87 7.88 -13.04 -0.10 7.76 16 17 O -0.54 -9.86 16.64 -12.96 -0.22 -10.08 16 18 N -0.60 -6.26 6.39 30.16 0.19 -6.07 16 19 O -0.14 -1.61 11.09 -29.60 -0.33 -1.94 16 20 C 0.08 0.53 6.38 36.00 0.23 0.76 16 21 C -0.14 -1.09 5.53 -104.48 -0.58 -1.67 16 22 C -0.05 -0.33 9.86 -39.28 -0.39 -0.72 16 23 C -0.18 -1.03 10.11 -39.44 -0.40 -1.43 16 24 C 0.11 0.75 11.18 -17.55 -0.20 0.55 16 25 N -0.49 -4.52 10.36 -13.25 -0.14 -4.66 16 26 C 0.13 1.05 10.86 -17.55 -0.19 0.86 16 27 C -0.04 -0.66 9.40 -39.15 -0.37 -1.02 16 28 C -0.20 -3.54 9.97 -39.47 -0.39 -3.93 16 29 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.14 2.85 5.62 -52.49 -0.29 2.56 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.13 1.78 7.52 -52.48 -0.39 1.38 16 33 H 0.13 1.19 6.06 -52.49 -0.32 0.87 16 34 H 0.41 2.54 8.52 -40.82 -0.35 2.19 16 35 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 40 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.38 6.16 -52.49 -0.32 1.06 16 42 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -33.31 376.01 -7.88 -41.19 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.48 Total: 4.79 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -4.50 Total: -16.61 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.83 Total: -33.50 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.54 Total: -16.90 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.86 Total: 15.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.31 -7.88 -41.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152365357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.471 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds