Wall clock time and date at job start Sat Apr 11 2020 05:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00492 * 2 1 4 4 H 1.48496 * 109.47226 * 270.00017 * 3 2 1 5 5 H 1.48503 * 109.46991 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.47366 * 149.99601 * 3 2 1 7 7 C 1.38722 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99535 * 0.02562 * 7 2 1 9 9 O 1.34775 * 120.00120 * 180.02562 * 7 2 1 10 10 C 1.35570 * 117.00328 * 185.06096 * 9 7 2 11 11 C 1.39186 * 119.89530 * 354.44459 * 10 9 7 12 12 C 1.37594 * 120.10273 * 179.74679 * 11 10 9 13 13 C 1.40026 * 119.89669 * 0.25351 * 12 11 10 14 14 C 1.46960 * 120.10276 * 180.02562 * 13 12 11 15 15 C 1.35019 * 119.99964 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99951 * 180.02562 * 15 14 13 17 17 O 1.21723 * 119.99490 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00203 * 179.97438 * 16 15 14 19 19 O 1.41604 * 119.99906 * 179.97438 * 18 16 15 20 20 C 1.42907 * 113.99733 * 179.97438 * 19 18 16 21 21 C 1.50697 * 109.47043 * 180.02562 * 20 19 18 22 22 C 1.38679 * 120.41851 * 269.72759 * 21 20 19 23 23 C 1.38624 * 118.42024 * 179.78169 * 22 21 20 24 24 C 1.38227 * 119.15855 * 0.51082 * 23 22 21 25 25 N 1.31852 * 120.76499 * 359.72692 * 24 23 22 26 26 C 1.31881 * 121.72800 * 359.97438 * 25 24 23 27 27 C 1.40025 * 119.79857 * 359.97438 * 13 12 11 28 28 C 1.37597 * 119.89768 * 0.02562 * 27 13 12 29 29 H 0.97001 * 119.99729 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.94523 * 0.02562 * 11 10 9 31 31 H 1.07997 * 120.05578 * 180.26865 * 12 11 10 32 32 H 1.08003 * 119.99712 * 359.97438 * 14 13 12 33 33 H 1.07994 * 120.00582 * 359.97438 * 15 14 13 34 34 H 0.97000 * 120.00437 * 359.97438 * 18 16 15 35 35 H 1.08995 * 109.47161 * 300.00626 * 20 19 18 36 36 H 1.09003 * 109.46890 * 60.00472 * 20 19 18 37 37 H 1.07999 * 120.78971 * 0.02562 * 22 21 20 38 38 H 1.07999 * 120.42256 * 180.21535 * 23 22 21 39 39 H 1.08005 * 119.61544 * 179.74473 * 24 23 22 40 40 H 1.07998 * 119.62158 * 179.97438 * 26 25 24 41 41 H 1.08000 * 120.05154 * 179.97438 * 27 13 12 42 42 H 1.08004 * 119.94803 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0086 -1.2014 0.0005 8 1 1.4685 -2.1367 0.0005 9 8 3.3564 -1.2015 0.0011 10 6 3.9719 -2.4047 -0.1050 11 6 3.2167 -3.5738 -0.0913 12 6 3.8366 -4.7971 -0.2039 13 6 5.2297 -4.8649 -0.3270 14 6 5.8964 -6.1690 -0.4481 15 6 7.2399 -6.2319 -0.5663 16 6 7.9034 -7.5298 -0.6874 17 8 7.2442 -8.5531 -0.6812 18 7 9.2444 -7.5927 -0.8058 19 8 9.8867 -8.8493 -0.9225 20 6 11.3084 -8.7665 -1.0413 21 6 11.8842 -10.1541 -1.1593 22 6 12.2606 -10.8569 -0.0245 23 6 12.7814 -12.1321 -0.1808 24 6 12.9171 -12.6528 -1.4540 25 7 12.5531 -11.9536 -2.5110 26 6 12.0486 -10.7402 -2.3997 27 6 5.9857 -3.6863 -0.3355 28 6 5.3572 -2.4675 -0.2224 29 1 -0.4850 0.8401 0.0004 30 1 2.1422 -3.5205 0.0033 31 1 3.2495 -5.7036 -0.1975 32 1 5.3117 -7.0770 -0.4418 33 1 7.8247 -5.3241 -0.5722 34 1 9.7696 -6.7772 -0.8111 35 1 11.5657 -8.1899 -1.9297 36 1 11.7188 -8.2763 -0.1585 37 1 12.1471 -10.4226 0.9577 38 1 13.0817 -12.7095 0.6811 39 1 13.3259 -13.6440 -1.5845 40 1 11.7621 -10.1977 -3.2885 41 1 7.0606 -3.7338 -0.4299 42 1 5.9396 -1.5579 -0.2285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152365357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:37 Heat of formation + Delta-G solvation = 6.368041 kcal Electronic energy + Delta-G solvation = -25860.809513 eV Core-core repulsion = 21773.766124 eV Total energy + Delta-G solvation = -4087.043389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.22512 -40.97892 -40.48663 -38.69097 -38.24133 -34.78219 -34.47891 -34.18335 -33.11918 -32.30123 -31.97305 -29.74809 -27.58173 -27.25525 -24.66204 -24.61604 -23.77514 -23.18140 -22.27111 -20.75482 -19.81454 -19.24332 -18.86258 -18.41147 -18.03279 -17.62858 -16.70634 -16.62628 -16.36148 -16.14723 -15.85381 -15.73757 -15.58402 -15.26539 -15.11598 -14.90079 -14.71196 -14.38747 -14.24290 -14.08398 -14.05152 -13.77442 -13.38554 -13.19844 -12.74327 -12.72127 -12.62368 -12.35311 -12.15812 -11.92999 -11.29489 -11.18169 -11.16223 -10.89644 -10.68236 -10.50032 -10.14028 -9.98083 -9.89338 -8.74300 -8.52801 -6.24629 -0.30220 -0.11024 0.24703 0.57827 0.97356 1.09471 1.33746 1.38316 1.53322 2.27084 2.30701 2.75514 2.81212 3.01863 3.16869 3.38996 3.55969 3.74656 3.76780 3.78381 3.93877 3.96824 4.01031 4.06781 4.23125 4.32881 4.34661 4.40365 4.47698 4.60713 4.63511 4.77667 4.85955 5.09313 5.10364 5.18422 5.20882 5.28742 5.38158 5.58218 5.66802 5.69990 5.72141 5.79995 5.85072 6.16074 6.37752 6.80465 6.92331 7.28270 7.51706 8.58045 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.042061 B = 0.001375 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.547679 B =20361.126334 C =20726.515323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.404 4.404 8 H 0.084 0.916 9 O -0.233 6.233 10 C 0.137 3.863 11 C -0.245 4.245 12 C -0.044 4.044 13 C -0.161 4.161 14 C 0.021 3.979 15 C -0.227 4.227 16 C 0.562 3.438 17 O -0.588 6.588 18 N -0.579 5.579 19 O -0.171 6.171 20 C 0.077 3.923 21 C -0.154 4.154 22 C -0.059 4.059 23 C -0.173 4.173 24 C 0.094 3.906 25 N -0.519 5.519 26 C 0.107 3.893 27 C -0.036 4.036 28 C -0.194 4.194 29 H 0.286 0.714 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.171 0.829 34 H 0.430 0.570 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.986 -16.460 -0.148 34.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.101 0.899 9 O -0.139 6.139 10 C 0.086 3.914 11 C -0.264 4.264 12 C -0.063 4.063 13 C -0.162 4.162 14 C 0.001 3.999 15 C -0.248 4.248 16 C 0.354 3.646 17 O -0.469 6.469 18 N -0.282 5.282 19 O -0.177 6.177 20 C 0.001 3.999 21 C -0.158 4.158 22 C -0.085 4.085 23 C -0.193 4.193 24 C -0.062 4.062 25 N -0.228 5.228 26 C -0.050 4.050 27 C -0.053 4.053 28 C -0.213 4.213 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.188 0.812 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.175 0.825 38 H 0.185 0.815 39 H 0.197 0.803 40 H 0.182 0.818 41 H 0.190 0.810 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 29.447 -17.373 -0.959 34.204 hybrid contribution -0.420 1.118 0.746 1.408 sum 29.027 -16.255 -0.213 33.270 Atomic orbital electron populations 1.69706 1.07095 1.29846 1.49078 1.25328 0.95850 1.02314 0.95159 0.85207 0.78951 0.77155 0.79380 1.18985 1.19382 1.18211 1.20758 0.77979 0.96280 1.52992 0.89899 1.83457 1.21386 1.27614 1.81427 1.19987 0.93485 0.84881 0.93051 1.21217 1.00516 0.93004 1.11670 1.21291 0.94343 0.96602 0.94022 1.18752 0.92754 0.93081 1.11613 1.22155 0.94529 0.95434 0.87787 1.22419 0.95136 0.95130 1.12102 1.18747 0.79891 0.90358 0.75578 1.90824 1.65216 1.38146 1.52715 1.47209 1.04885 0.99707 1.76384 1.90671 1.20561 1.09872 1.96602 1.21873 0.79255 0.94297 1.04521 1.20527 1.02796 0.97319 0.95124 1.21943 0.93009 0.94154 0.99363 1.22533 1.00474 0.96393 0.99874 1.23385 0.94327 1.00236 0.88252 1.67760 1.11822 1.07767 1.35478 1.22992 0.93408 0.91078 0.97518 1.21399 1.00924 0.89313 0.93712 1.20516 0.90174 1.00165 1.10401 0.90403 0.87045 0.84466 0.86060 0.81217 0.72567 0.88677 0.88444 0.82542 0.81514 0.80283 0.81784 0.80992 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.17 13.96 21.62 0.30 -52.87 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 0.97 43.17 28.62 68.60 1.96 45.14 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.40 -22.80 9.94 67.94 0.68 -22.13 16 8 H 0.08 4.93 5.41 -2.91 -0.02 4.91 16 9 O -0.23 -11.85 8.57 -20.20 -0.17 -12.03 16 10 C 0.14 5.88 6.66 22.72 0.15 6.03 16 11 C -0.24 -10.12 9.14 22.35 0.20 -9.91 16 12 C -0.04 -1.46 9.78 22.55 0.22 -1.24 16 13 C -0.16 -4.44 5.87 -20.13 -0.12 -4.56 16 14 C 0.02 0.50 9.45 23.82 0.23 0.72 16 15 C -0.23 -4.22 9.41 23.62 0.22 -4.00 16 16 C 0.56 13.27 7.88 86.33 0.68 13.95 16 17 O -0.59 -20.34 16.64 12.91 0.21 -20.13 16 18 N -0.58 -9.42 6.39 -176.69 -1.13 -10.55 16 19 O -0.17 -3.37 11.09 -21.46 -0.24 -3.61 16 20 C 0.08 0.77 6.38 71.23 0.45 1.22 16 21 C -0.15 -2.01 5.53 -19.77 -0.11 -2.12 16 22 C -0.06 -0.63 9.86 22.47 0.22 -0.41 16 23 C -0.17 -1.62 10.11 22.36 0.23 -1.40 16 24 C 0.09 1.17 11.18 84.69 0.95 2.12 16 25 N -0.52 -9.23 10.36 -195.85 -2.03 -11.26 16 26 C 0.11 1.67 10.86 84.67 0.92 2.59 16 27 C -0.04 -0.90 9.40 22.55 0.21 -0.69 16 28 C -0.19 -6.36 9.97 22.34 0.22 -6.14 16 29 H 0.29 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.11 5.13 5.62 -2.91 -0.02 5.11 16 31 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.12 3.11 7.52 -2.91 -0.02 3.09 16 33 H 0.17 1.72 6.06 -2.91 -0.02 1.70 16 34 H 0.43 2.79 8.52 -92.71 -0.79 2.00 16 35 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 36 H 0.10 0.49 8.09 -2.39 -0.02 0.47 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 38 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.17 2.55 6.16 -2.91 -0.02 2.53 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -79.56 376.01 5.02 -74.53 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.29 Total: 15.54 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 5.82 Total: -24.77 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.86 Total: -74.68 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.20 Total: -35.76 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.96 Total: 45.14 kcal Total: -79.56 5.02 -74.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152365357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.900 kcal (2) G-P(sol) polarization free energy of solvation -79.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds