Wall clock time and date at job start Sat Apr 11 2020 05:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48495 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47477 * 300.00145 * 3 2 1 6 6 H 1.48505 * 109.47205 * 59.99782 * 3 2 1 7 7 C 1.40052 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99760 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00236 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00065 * 179.97438 * 9 7 2 12 12 N 1.40101 * 120.00062 * 179.97438 * 11 9 7 13 13 C 1.34778 * 119.99639 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00282 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99780 * 180.02562 * 13 12 11 16 16 O 1.42895 * 109.47113 * 179.97438 * 15 13 12 17 17 C 1.35845 * 117.00415 * 179.97438 * 16 15 13 18 18 C 1.38585 * 120.11253 * 0.02562 * 17 16 15 19 19 C 1.38182 * 120.06157 * 179.97438 * 18 17 16 20 20 C 1.38395 * 120.30193 * 0.02562 * 19 18 17 21 21 C 1.37997 * 120.23734 * 359.97438 * 20 19 18 22 22 C 1.39303 * 119.93433 * 0.02562 * 21 20 19 23 23 C 1.48333 * 120.14811 * 180.02562 * 22 21 20 24 24 C 1.39362 * 120.11831 * 129.72431 * 23 22 21 25 25 C 1.38016 * 119.87218 * 179.76909 * 24 23 22 26 26 C 1.38336 * 120.12147 * 0.50623 * 25 24 23 27 27 C 1.38320 * 120.24567 * 359.74515 * 26 25 24 28 28 C 1.38008 * 120.13107 * 0.02562 * 27 26 25 29 29 H 0.96994 * 120.00494 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99781 * 0.02562 * 11 9 7 31 31 H 0.96996 * 119.99805 * 0.02562 * 12 11 9 32 32 H 1.09001 * 109.46719 * 60.00543 * 15 13 12 33 33 H 1.09000 * 109.47029 * 300.00367 * 15 13 12 34 34 H 1.08002 * 119.97225 * 359.97438 * 18 17 16 35 35 H 1.07996 * 119.84891 * 180.27805 * 19 18 17 36 36 H 1.07998 * 119.87742 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.03171 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.06986 * 359.97438 * 24 23 22 39 39 H 1.07995 * 119.94133 * 180.23037 * 25 24 23 40 40 H 1.07996 * 119.87228 * 179.72170 * 26 25 24 41 41 H 1.08002 * 119.93350 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.06527 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3464 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9491 -3.6477 0.0017 12 7 1.2486 -4.8610 0.0033 13 6 1.9225 -6.0282 0.0038 14 8 3.1353 -6.0282 0.0034 15 6 1.1691 -7.3333 0.0050 16 8 2.0977 -8.4194 0.0048 17 6 1.5786 -9.6748 0.0063 18 6 0.2050 -9.8592 0.0074 19 6 -0.3219 -11.1366 0.0084 20 6 0.5165 -12.2377 0.0088 21 6 1.8860 -12.0685 0.0077 22 6 2.4278 -10.7851 0.0067 23 6 3.8993 -10.5977 0.0049 24 6 4.4945 -9.7453 -0.9232 25 6 5.8636 -9.5710 -0.9172 26 6 6.6457 -10.2485 0.0010 27 6 6.0606 -11.0997 0.9210 28 6 4.6921 -11.2780 0.9272 29 1 -0.4850 0.8400 0.0004 30 1 2.9191 -3.6477 0.0013 31 1 0.2786 -4.8610 0.0041 32 1 0.5422 -7.3916 -0.8848 33 1 0.5427 -7.3904 0.8952 34 1 -0.4542 -9.0037 0.0075 35 1 -1.3927 -11.2763 0.0047 36 1 0.0973 -13.2330 0.0100 37 1 2.5372 -12.9302 0.0084 38 1 3.8854 -9.2196 -1.6436 39 1 6.3257 -8.9079 -1.6335 40 1 7.7171 -10.1125 -0.0009 41 1 6.6761 -11.6264 1.6353 42 1 4.2364 -11.9426 1.6464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153476709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:41 Heat of formation + Delta-G solvation = -24.487801 kcal Electronic energy + Delta-G solvation = -27572.000589 eV Core-core repulsion = 23483.619190 eV Total energy + Delta-G solvation = -4088.381399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68373 -39.43590 -38.67017 -37.55429 -36.91543 -34.19475 -32.93027 -32.60638 -31.08748 -30.82443 -30.25530 -29.08359 -27.82731 -26.02301 -23.71745 -22.98164 -22.00340 -21.27034 -20.62790 -20.57955 -18.51954 -17.80088 -17.15252 -16.68510 -16.43131 -16.23389 -15.94428 -15.79244 -15.21344 -14.98224 -14.80616 -14.42992 -14.29175 -13.99498 -13.82743 -13.49587 -13.39262 -13.01749 -12.79196 -12.68895 -12.59965 -12.42337 -11.98259 -11.60652 -11.42657 -11.28202 -11.17520 -11.09222 -10.89623 -10.69788 -10.37230 -10.19024 -9.68032 -9.50055 -9.01599 -8.92572 -8.77105 -8.12811 -8.01505 -7.23638 -6.42215 -4.86969 0.76149 1.17913 1.42146 1.57120 2.29848 2.77975 3.05048 3.13382 3.18442 3.41525 3.47222 3.83298 4.02687 4.36514 4.37303 4.48696 4.66354 4.77854 4.81817 4.91356 4.95350 4.95482 5.04303 5.11296 5.14774 5.34116 5.44159 5.54948 5.56001 5.56073 5.65699 5.86627 5.97232 6.07651 6.13811 6.25699 6.40034 6.48962 6.54804 6.58071 6.96267 7.10958 7.25407 7.25614 7.74474 7.85553 8.12011 8.70477 8.80935 9.15499 10.31930 10.50659 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002299 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.151265 B =12176.753415 C =13855.197809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.918 3.082 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.077 0.923 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.558 5.558 12 N -0.506 5.506 13 C 0.500 3.500 14 O -0.534 6.534 15 C 0.049 3.951 16 O -0.278 6.278 17 C 0.144 3.856 18 C -0.210 4.210 19 C -0.077 4.077 20 C -0.159 4.159 21 C -0.069 4.069 22 C -0.078 4.078 23 C -0.040 4.040 24 C -0.081 4.081 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.110 4.110 29 H 0.272 0.728 30 H 0.414 0.586 31 H 0.425 0.575 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -23.817 -0.197 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.312 5.312 12 N -0.250 5.250 13 C 0.282 3.718 14 O -0.410 6.410 15 C -0.031 4.031 16 O -0.189 6.189 17 C 0.098 3.902 18 C -0.229 4.229 19 C -0.095 4.095 20 C -0.177 4.177 21 C -0.087 4.087 22 C -0.078 4.078 23 C -0.040 4.040 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.128 4.128 29 H 0.083 0.917 30 H 0.254 0.746 31 H 0.265 0.735 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.732 -23.623 -0.198 23.917 hybrid contribution -0.002 0.873 0.061 0.875 sum 3.730 -22.750 -0.137 23.055 Atomic orbital electron populations 1.70009 1.07159 1.27796 1.34142 1.25728 0.94778 1.00500 0.92390 0.86140 0.80505 0.80810 0.78371 1.18477 1.19950 1.19955 1.20723 0.94021 0.87774 1.54277 0.90524 1.18672 0.87645 0.80719 0.76963 1.90612 1.13765 1.85777 1.56048 1.45935 1.07732 0.94003 1.83572 1.44374 1.09143 0.98534 1.72932 1.19808 0.88510 0.83636 0.79808 1.90733 1.13114 1.86753 1.50417 1.22338 0.91797 0.84936 1.04036 1.86202 1.33728 1.11081 1.87898 1.19055 0.91542 0.84175 0.95433 1.21269 0.93495 0.99067 1.09051 1.21002 0.99935 0.91728 0.96829 1.20982 0.93220 0.98947 1.04586 1.21043 0.95183 0.95152 0.97369 1.18116 0.91679 0.90929 1.07109 1.18551 0.90909 0.98026 0.96547 1.21190 0.94709 0.96125 0.97886 1.21109 0.93827 0.99296 0.99210 1.21186 0.99788 0.97072 0.95749 1.21007 0.94675 0.99439 0.99209 1.21133 0.93614 0.99750 0.98272 0.91735 0.74625 0.73499 0.88771 0.88797 0.84970 0.85623 0.85737 0.85235 0.85950 0.85961 0.86269 0.86190 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.70 11.83 55.55 0.66 -21.04 16 2 C 0.09 2.31 5.50 -17.36 -0.10 2.22 16 3 Si 0.92 19.30 29.56 -169.99 -5.02 14.28 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.53 -14.34 9.54 -35.63 -0.34 -14.68 16 8 H 0.08 1.91 7.85 -52.49 -0.41 1.50 16 9 C 0.55 15.10 7.86 -12.99 -0.10 15.00 16 10 O -0.58 -17.49 14.86 5.20 0.08 -17.41 16 11 N -0.56 -12.76 6.25 30.19 0.19 -12.57 16 12 N -0.51 -9.66 6.26 31.22 0.20 -9.46 16 13 C 0.50 8.71 8.02 -10.98 -0.09 8.62 16 14 O -0.53 -11.27 16.34 -14.35 -0.23 -11.50 16 15 C 0.05 0.62 5.22 36.01 0.19 0.81 16 16 O -0.28 -4.01 8.03 -39.16 -0.31 -4.32 16 17 C 0.14 1.79 6.60 -38.87 -0.26 1.53 16 18 C -0.21 -2.11 9.03 -39.47 -0.36 -2.47 16 19 C -0.08 -0.66 10.03 -39.54 -0.40 -1.05 16 20 C -0.16 -1.32 10.03 -39.61 -0.40 -1.71 16 21 C -0.07 -0.65 9.51 -39.27 -0.37 -1.03 16 22 C -0.08 -0.92 5.48 -104.77 -0.57 -1.50 16 23 C -0.04 -0.51 5.27 -104.91 -0.55 -1.06 16 24 C -0.08 -1.09 8.79 -39.24 -0.34 -1.43 16 25 C -0.12 -1.43 10.03 -39.63 -0.40 -1.82 16 26 C -0.12 -1.30 10.04 -39.52 -0.40 -1.70 16 27 C -0.13 -1.30 10.03 -39.64 -0.40 -1.70 16 28 C -0.11 -1.22 9.51 -39.25 -0.37 -1.59 16 29 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 30 H 0.41 9.09 7.98 -182.59 -1.46 7.64 16 31 H 0.42 7.51 8.00 -182.60 -1.46 6.05 16 32 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 33 H 0.09 0.95 7.66 -51.93 -0.40 0.55 16 34 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.97 8.04 -52.48 -0.42 0.54 16 38 H 0.12 1.69 7.70 -52.49 -0.40 1.29 16 39 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 1.09 8.04 -52.48 -0.42 0.67 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -35.54 372.78 -11.05 -46.59 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.95 Total: 13.39 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -5.26 Total: -3.56 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 1.04 Total: -43.08 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.47 Total: -33.24 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.54 -11.05 -46.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153476709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.099 kcal (2) G-P(sol) polarization free energy of solvation -35.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds