Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86796 * 119.99903 * 2 1 4 4 H 1.48495 * 109.47340 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47477 * 300.00145 * 3 2 1 6 6 H 1.48505 * 109.47205 * 59.99782 * 3 2 1 7 7 C 1.40052 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00008 * 180.02562 * 7 2 1 9 9 C 1.46372 * 119.99760 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00236 * 0.02562 * 9 7 2 11 11 N 1.34779 * 120.00065 * 179.97438 * 9 7 2 12 12 N 1.40101 * 120.00062 * 179.97438 * 11 9 7 13 13 C 1.34778 * 119.99639 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00282 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99780 * 180.02562 * 13 12 11 16 16 O 1.42895 * 109.47113 * 179.97438 * 15 13 12 17 17 C 1.35845 * 117.00415 * 179.97438 * 16 15 13 18 18 C 1.38585 * 120.11253 * 0.02562 * 17 16 15 19 19 C 1.38182 * 120.06157 * 179.97438 * 18 17 16 20 20 C 1.38395 * 120.30193 * 0.02562 * 19 18 17 21 21 C 1.37997 * 120.23734 * 359.97438 * 20 19 18 22 22 C 1.39303 * 119.93433 * 0.02562 * 21 20 19 23 23 C 1.48333 * 120.14811 * 180.02562 * 22 21 20 24 24 C 1.39362 * 120.11831 * 129.72431 * 23 22 21 25 25 C 1.38016 * 119.87218 * 179.76909 * 24 23 22 26 26 C 1.38336 * 120.12147 * 0.50623 * 25 24 23 27 27 C 1.38320 * 120.24567 * 359.74515 * 26 25 24 28 28 C 1.38008 * 120.13107 * 0.02562 * 27 26 25 29 29 H 0.96994 * 120.00494 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99781 * 0.02562 * 11 9 7 31 31 H 0.96996 * 119.99805 * 0.02562 * 12 11 9 32 32 H 1.09001 * 109.46719 * 60.00543 * 15 13 12 33 33 H 1.09000 * 109.47029 * 300.00367 * 15 13 12 34 34 H 1.08002 * 119.97225 * 359.97438 * 18 17 16 35 35 H 1.07996 * 119.84891 * 180.27805 * 19 18 17 36 36 H 1.07998 * 119.87742 * 179.97438 * 20 19 18 37 37 H 1.08007 * 120.03171 * 179.97438 * 21 20 19 38 38 H 1.07997 * 120.06986 * 359.97438 * 24 23 22 39 39 H 1.07995 * 119.94133 * 180.23037 * 25 24 23 40 40 H 1.07996 * 119.87228 * 179.72170 * 26 25 24 41 41 H 1.08002 * 119.93350 * 179.97438 * 27 26 25 42 42 H 1.08004 * 120.06527 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7006 1.3464 0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8819 2.3965 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0871 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0017 10 8 0.0583 -2.4805 0.0017 11 7 1.9491 -3.6477 0.0017 12 7 1.2486 -4.8610 0.0033 13 6 1.9225 -6.0282 0.0038 14 8 3.1353 -6.0282 0.0034 15 6 1.1691 -7.3333 0.0050 16 8 2.0977 -8.4194 0.0048 17 6 1.5786 -9.6748 0.0063 18 6 0.2050 -9.8592 0.0074 19 6 -0.3219 -11.1366 0.0084 20 6 0.5165 -12.2377 0.0088 21 6 1.8860 -12.0685 0.0077 22 6 2.4278 -10.7851 0.0067 23 6 3.8993 -10.5977 0.0049 24 6 4.4945 -9.7453 -0.9232 25 6 5.8636 -9.5710 -0.9172 26 6 6.6457 -10.2485 0.0010 27 6 6.0606 -11.0997 0.9210 28 6 4.6921 -11.2780 0.9272 29 1 -0.4850 0.8400 0.0004 30 1 2.9191 -3.6477 0.0013 31 1 0.2786 -4.8610 0.0041 32 1 0.5422 -7.3916 -0.8848 33 1 0.5427 -7.3904 0.8952 34 1 -0.4542 -9.0037 0.0075 35 1 -1.3927 -11.2763 0.0047 36 1 0.0973 -13.2330 0.0100 37 1 2.5372 -12.9302 0.0084 38 1 3.8854 -9.2196 -1.6436 39 1 6.3257 -8.9079 -1.6335 40 1 7.7171 -10.1125 -0.0009 41 1 6.6761 -11.6264 1.6353 42 1 4.2364 -11.9426 1.6464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153476709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -46.971407 kcal Electronic energy + Delta-G solvation = -27572.975551 eV Core-core repulsion = 23483.619190 eV Total energy + Delta-G solvation = -4089.356361 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63250 -40.80528 -39.68600 -39.10267 -38.12403 -35.98708 -34.65592 -33.71830 -32.55294 -31.83174 -31.09106 -30.06146 -29.07032 -27.84399 -24.51167 -23.88015 -22.99341 -22.45719 -22.21442 -21.85581 -19.61300 -19.29416 -18.48717 -17.97946 -17.77377 -17.49759 -17.24364 -16.75564 -16.62882 -15.93030 -15.77488 -15.68781 -15.56376 -15.27252 -15.03549 -14.71531 -14.57520 -14.29515 -14.20483 -13.80321 -13.66056 -13.34580 -13.30481 -12.86307 -12.76208 -12.70870 -12.33452 -12.15473 -12.01553 -11.99040 -11.92979 -11.70375 -11.17562 -10.99244 -10.28200 -10.15373 -9.81792 -9.54384 -9.07528 -8.94843 -8.42255 -6.97644 -0.02345 0.44142 0.52889 0.76195 0.92829 1.32834 1.42949 1.43151 1.60370 2.18345 2.33298 2.36028 2.72834 2.97499 3.19711 3.47919 3.62285 3.80885 3.93741 3.99944 4.01959 4.08016 4.13252 4.15534 4.28518 4.35239 4.47791 4.56746 4.67462 4.71991 4.91658 5.10316 5.14427 5.24895 5.30027 5.41580 5.43316 5.55227 5.59396 5.63346 5.69599 5.80386 5.94246 6.07495 6.11324 6.25623 6.38174 6.74835 7.12670 7.21036 8.28218 8.52912 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015017 B = 0.002299 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.151265 B =12176.753415 C =13855.197809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.034 3.966 3 Si 1.003 2.997 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.559 4.559 8 H 0.091 0.909 9 C 0.543 3.457 10 O -0.618 6.618 11 N -0.558 5.558 12 N -0.507 5.507 13 C 0.504 3.496 14 O -0.573 6.573 15 C 0.057 3.943 16 O -0.307 6.307 17 C 0.117 3.883 18 C -0.214 4.214 19 C -0.077 4.077 20 C -0.154 4.154 21 C -0.072 4.072 22 C -0.099 4.099 23 C -0.053 4.053 24 C -0.107 4.107 25 C -0.135 4.135 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.280 0.720 30 H 0.418 0.582 31 H 0.431 0.569 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.726 -25.248 0.471 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.183 4.183 3 Si 0.822 3.178 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.109 0.891 9 C 0.349 3.651 10 O -0.503 6.503 11 N -0.310 5.310 12 N -0.252 5.252 13 C 0.289 3.711 14 O -0.451 6.451 15 C -0.022 4.022 16 O -0.220 6.220 17 C 0.072 3.928 18 C -0.233 4.233 19 C -0.095 4.095 20 C -0.171 4.171 21 C -0.090 4.090 22 C -0.100 4.100 23 C -0.053 4.053 24 C -0.125 4.125 25 C -0.153 4.153 26 C -0.145 4.145 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.090 0.910 30 H 0.258 0.742 31 H 0.273 0.727 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.164 0.836 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.721 -25.108 0.467 25.387 hybrid contribution 0.002 1.126 -0.145 1.136 sum 3.723 -23.982 0.322 24.272 Atomic orbital electron populations 1.70128 1.09330 1.29532 1.35019 1.26933 0.95659 1.04658 0.91011 0.84878 0.79182 0.74953 0.78782 1.17296 1.19028 1.19049 1.21252 0.95002 0.88634 1.54794 0.89109 1.18877 0.87320 0.82068 0.76805 1.90566 1.15172 1.86718 1.57877 1.45471 1.07847 0.95141 1.82525 1.44525 1.09363 0.97559 1.73738 1.20745 0.88256 0.84473 0.77605 1.90712 1.15160 1.87391 1.51842 1.22358 0.90915 0.81984 1.06923 1.86144 1.34903 1.12143 1.88779 1.19309 0.92792 0.83268 0.97472 1.21530 0.92600 1.00581 1.08583 1.21402 1.01514 0.91086 0.95496 1.21382 0.92662 1.00388 1.02714 1.21298 0.96214 0.94628 0.96821 1.18349 0.91363 0.91957 1.08338 1.18792 0.91898 0.97980 0.96587 1.21201 0.95212 0.97405 0.98699 1.21311 0.93788 1.00023 1.00131 1.21496 1.00913 0.96764 0.95330 1.21403 0.94825 0.98873 0.99176 1.21434 0.94027 0.99812 0.98183 0.90978 0.74230 0.72729 0.85659 0.85788 0.83313 0.82813 0.82818 0.83573 0.87779 0.85629 0.84007 0.83293 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.94 11.83 21.84 0.26 -46.68 16 2 C 0.03 1.82 5.50 85.31 0.47 2.29 16 3 Si 1.00 39.32 29.56 68.60 2.03 41.35 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 7 C -0.56 -30.71 9.54 24.83 0.24 -30.48 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.54 30.42 7.86 86.36 0.68 31.10 16 10 O -0.62 -38.39 14.86 -4.30 -0.06 -38.45 16 11 N -0.56 -26.21 6.25 -176.63 -1.10 -27.32 16 12 N -0.51 -19.64 6.26 -173.53 -1.09 -20.73 16 13 C 0.50 17.79 8.02 87.66 0.70 18.49 16 14 O -0.57 -24.97 16.34 16.01 0.26 -24.71 16 15 C 0.06 1.41 5.22 71.24 0.37 1.78 16 16 O -0.31 -8.97 8.03 -72.77 -0.58 -9.55 16 17 C 0.12 2.85 6.60 22.73 0.15 3.00 16 18 C -0.21 -3.88 9.03 22.34 0.20 -3.68 16 19 C -0.08 -1.08 10.03 22.29 0.22 -0.86 16 20 C -0.15 -2.07 10.03 22.25 0.22 -1.85 16 21 C -0.07 -1.22 9.51 22.47 0.21 -1.01 16 22 C -0.10 -2.33 5.48 -19.96 -0.11 -2.44 16 23 C -0.05 -1.35 5.27 -20.05 -0.11 -1.46 16 24 C -0.11 -3.06 8.79 22.49 0.20 -2.86 16 25 C -0.13 -3.46 10.03 22.24 0.22 -3.23 16 26 C -0.13 -2.71 10.04 22.31 0.22 -2.49 16 27 C -0.13 -2.43 10.03 22.23 0.22 -2.21 16 28 C -0.12 -2.49 9.51 22.49 0.21 -2.28 16 29 H 0.28 14.53 8.29 -92.71 -0.77 13.76 16 30 H 0.42 18.92 7.98 -213.31 -1.70 17.22 16 31 H 0.43 15.43 8.00 -213.32 -1.71 13.72 16 32 H 0.13 2.28 7.66 -2.39 -0.02 2.26 16 33 H 0.12 2.29 7.66 -2.39 -0.02 2.27 16 34 H 0.15 2.04 6.30 -2.91 -0.02 2.03 16 35 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 36 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.15 1.88 8.04 -2.91 -0.02 1.86 16 38 H 0.10 3.20 7.70 -2.91 -0.02 3.18 16 39 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 40 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.14 2.30 8.04 -2.91 -0.02 2.28 16 Total: -1.00 -80.51 372.78 1.73 -78.78 By element: Atomic # 1 Polarization: 47.81 SS G_CDS: -2.32 Total: 45.49 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 4.34 Total: 1.82 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -1.93 Total: -94.73 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -0.39 Total: -72.72 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -80.51 1.73 -78.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153476709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.812 kcal (2) G-P(sol) polarization free energy of solvation -80.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds