Wall clock time and date at job start Sat Apr 11 2020 05:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36345 * 120.30158 * 2 1 4 4 C 1.40643 * 119.24169 * 179.71279 * 3 2 1 5 5 N 1.40297 * 120.08809 * 180.28720 * 4 3 2 6 6 C 1.34768 * 119.99846 * 55.87741 * 5 4 3 7 7 O 1.21752 * 120.00254 * 4.78400 * 6 5 4 8 8 C 1.46221 * 120.00037 * 184.78365 * 6 5 4 9 9 C 1.35040 * 120.00225 * 179.97438 * 8 6 5 10 10 C 1.46954 * 120.00112 * 180.02562 * 9 8 6 11 11 C 1.40027 * 120.10225 * 359.72838 * 10 9 8 12 12 C 1.37602 * 119.89860 * 179.74499 * 11 10 9 13 13 C 1.39170 * 120.09783 * 0.52785 * 12 11 10 14 14 O 1.35573 * 119.89538 * 179.74511 * 13 12 11 15 15 C 1.34786 * 116.99894 * 185.52222 * 14 13 12 16 16 H 1.07995 * 120.00012 * 354.90141 * 15 14 13 17 17 C 1.38723 * 119.99689 * 174.90076 * 15 14 13 18 18 N 1.31510 * 120.00099 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99527 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47598 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47221 * 120.00250 * 19 17 15 22 22 H 1.48509 * 109.46927 * 239.99703 * 19 17 15 23 23 C 1.39171 * 120.20902 * 359.72136 * 13 12 11 24 24 C 1.37600 * 120.10032 * 0.02562 * 23 13 12 25 25 C 1.35915 * 119.81923 * 0.54056 * 4 3 2 26 26 N 1.35948 * 120.59526 * 359.45197 * 25 4 3 27 27 H 0.96996 * 119.61546 * 180.25376 * 26 25 4 28 28 C 1.34635 * 120.78022 * 0.27943 * 26 25 4 29 29 O 1.22097 * 119.92082 * 180.02562 * 28 26 25 30 30 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47079 * 300.02062 * 1 2 3 32 32 H 1.08997 * 109.46955 * 60.01968 * 1 2 3 33 33 H 1.07999 * 120.37538 * 0.02562 * 3 2 1 34 34 H 0.96993 * 119.99794 * 235.86615 * 5 4 3 35 35 H 1.08002 * 120.00367 * 0.02562 * 8 6 5 36 36 H 1.07993 * 119.99717 * 359.97438 * 9 8 6 37 37 H 1.08007 * 120.05265 * 359.96871 * 11 10 9 38 38 H 1.07994 * 119.95088 * 180.25538 * 12 11 10 39 39 H 0.96998 * 119.99552 * 179.97438 * 18 17 15 40 40 H 1.08005 * 119.95517 * 180.02562 * 23 13 12 41 41 H 1.08003 * 120.05551 * 179.97438 * 24 23 13 42 42 H 1.08002 * 119.69917 * 179.73186 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1772 0.0000 4 6 3.6011 1.1512 0.0062 5 7 4.3268 2.3519 0.0123 6 6 4.1107 3.2648 0.9799 7 8 3.3504 3.0120 1.8966 8 6 4.7894 4.5590 0.9287 9 6 4.5725 5.4739 1.8979 10 6 5.2542 6.7748 1.8462 11 6 6.1334 7.0656 0.7959 12 6 6.7654 8.2870 0.7488 13 6 6.5403 9.2284 1.7487 14 8 7.1691 10.4285 1.7010 15 6 6.9991 11.2508 2.7553 16 1 6.3195 10.9777 3.5490 17 6 7.6970 12.4479 2.8209 18 7 8.5242 12.7806 1.8541 19 14 7.4619 13.5871 4.2825 20 1 6.4841 12.9873 5.2255 21 1 8.7620 13.7807 4.9735 22 1 6.9522 14.8996 3.8101 23 6 5.6713 8.9419 2.7974 24 6 5.0308 7.7251 2.8500 25 6 4.2551 -0.0403 0.0009 26 7 3.5622 -1.2099 0.0009 27 1 4.0434 -2.0521 0.0008 28 6 2.2159 -1.2132 0.0004 29 8 1.6094 -2.2728 0.0009 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5135 -0.8901 33 1 1.6661 2.1188 0.0004 34 1 4.9841 2.5248 -0.6796 35 1 5.4636 4.7835 0.1154 36 1 3.8974 5.2500 2.7105 37 1 6.3125 6.3338 0.0220 38 1 7.4405 8.5138 -0.0631 39 1 9.0119 13.6178 1.8999 40 1 5.4992 9.6756 3.5710 41 1 4.3569 7.5034 3.6643 42 1 5.3350 -0.0580 0.0012 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158826740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:43 Heat of formation + Delta-G solvation = -25.616652 kcal Electronic energy + Delta-G solvation = -26461.411536 eV Core-core repulsion = 22372.981187 eV Total energy + Delta-G solvation = -4088.430349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65492 -39.84327 -39.22045 -37.37091 -36.90732 -35.18896 -34.31563 -33.30259 -32.37427 -30.50815 -30.09686 -28.18547 -27.53265 -25.76606 -24.39600 -23.97726 -22.38490 -21.98673 -20.90294 -19.60877 -18.75909 -18.34601 -17.84975 -17.22779 -17.10727 -16.83632 -16.16525 -15.82032 -15.05556 -14.87764 -14.66616 -14.47043 -14.27284 -14.18610 -13.89513 -13.60400 -13.39314 -13.30303 -13.11609 -12.68135 -12.66465 -12.34998 -12.10209 -12.02259 -11.84922 -11.79301 -11.19472 -11.16386 -10.73649 -10.71081 -10.57785 -10.36816 -10.05318 -9.70740 -9.61376 -9.56150 -8.93707 -8.45307 -8.06702 -7.19574 -6.71466 -4.25925 0.42132 0.91367 1.43046 2.07142 2.39568 2.46736 2.99223 3.00923 3.06801 3.07597 3.23490 3.44881 3.77147 4.17604 4.43706 4.47527 4.58229 4.67821 4.85899 4.93303 4.97254 5.14565 5.18664 5.44297 5.45574 5.49059 5.56177 5.58848 5.69114 5.74933 5.94267 5.98086 6.03410 6.18640 6.31192 6.39080 6.42183 6.51805 6.56729 6.71486 6.84992 7.05787 7.15448 7.19882 7.28106 7.56846 7.68411 7.73975 8.12937 8.73375 9.39560 10.44986 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.038926 B = 0.001528 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.137837 B =18318.445065 C =18684.455514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.198 4.198 3 C -0.010 4.010 4 C 0.056 3.944 5 N -0.675 5.675 6 C 0.559 3.441 7 O -0.542 6.542 8 C -0.289 4.289 9 C 0.048 3.952 10 C -0.203 4.203 11 C -0.041 4.041 12 C -0.200 4.200 13 C 0.168 3.832 14 O -0.161 6.161 15 C -0.393 4.393 16 H 0.099 0.901 17 C 0.042 3.958 18 N -0.850 5.850 19 Si 0.945 3.055 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.273 1.273 23 C -0.243 4.243 24 C -0.033 4.033 25 C 0.102 3.898 26 N -0.598 5.598 27 H 0.418 0.582 28 C 0.518 3.482 29 O -0.553 6.553 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.410 0.590 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.274 0.726 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -19.681 -4.932 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.202 4.202 3 C -0.032 4.032 4 C -0.042 4.042 5 N -0.325 5.325 6 C 0.352 3.648 7 O -0.420 6.420 8 C -0.310 4.310 9 C 0.028 3.972 10 C -0.204 4.204 11 C -0.059 4.059 12 C -0.219 4.219 13 C 0.111 3.889 14 O -0.061 6.061 15 C -0.468 4.468 16 H 0.116 0.884 17 C -0.165 4.165 18 N -0.482 5.482 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.262 4.262 24 C -0.051 4.051 25 C -0.027 4.027 26 N -0.231 5.231 27 H 0.256 0.744 28 C 0.318 3.682 29 O -0.435 6.435 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.247 0.753 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.940 -19.989 -4.509 21.634 hybrid contribution 0.716 0.521 0.337 0.947 sum -6.224 -19.468 -4.172 20.860 Atomic orbital electron populations 1.20509 0.88740 1.03942 1.02136 1.20656 0.98171 0.91398 1.09975 1.21387 0.92638 0.98992 0.90201 1.16622 0.90745 0.85655 1.11173 1.43169 1.42711 1.16080 1.30504 1.18564 0.81276 0.84403 0.80509 1.90828 1.37726 1.79515 1.33943 1.22292 1.09630 0.94185 1.04911 1.22317 0.90436 0.90236 0.94196 1.18435 1.06632 0.95197 1.00184 1.20879 0.93787 0.95162 0.96095 1.20153 1.06774 0.93715 1.01286 1.19623 0.90416 0.85945 0.92939 1.83903 1.60035 1.20876 1.41311 1.21548 1.26670 0.99487 0.99132 0.88402 1.25414 0.95061 0.97125 0.98870 1.70020 1.23776 1.23187 1.31240 0.85573 0.78798 0.79330 0.79363 1.18825 1.19865 1.19875 1.21107 1.03755 0.99046 1.02292 1.21000 0.95875 0.92299 0.95928 1.21721 0.98199 0.84759 0.98044 1.43281 1.08596 1.09204 1.61995 0.74401 1.16924 0.80928 0.91176 0.79171 1.90990 1.66373 1.32900 1.53277 0.90397 0.91095 0.91238 0.84522 0.75342 0.85580 0.85870 0.86355 0.86093 0.91569 0.85082 0.86772 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.03 36.01 0.36 -0.51 16 2 C -0.20 -2.04 5.90 -104.45 -0.62 -2.66 16 3 C -0.01 -0.09 8.65 -39.36 -0.34 -0.43 16 4 C 0.06 0.47 5.73 -83.91 -0.48 -0.01 16 5 N -0.68 -5.42 5.29 -11.32 -0.06 -5.48 16 6 C 0.56 6.58 7.53 -13.06 -0.10 6.48 16 7 O -0.54 -8.40 15.56 5.14 0.08 -8.32 16 8 C -0.29 -3.33 9.41 -37.51 -0.35 -3.68 16 9 C 0.05 0.65 9.45 -37.19 -0.35 0.30 16 10 C -0.20 -3.19 5.87 -105.03 -0.62 -3.81 16 11 C -0.04 -0.64 9.40 -39.14 -0.37 -1.01 16 12 C -0.20 -3.78 9.97 -39.47 -0.39 -4.17 16 13 C 0.17 3.69 6.66 -38.89 -0.26 3.43 16 14 O -0.16 -4.23 9.74 0.72 0.01 -4.22 16 15 C -0.39 -10.15 9.48 30.91 0.29 -9.86 16 16 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 19 Si 0.95 19.03 29.55 -169.99 -5.02 14.00 16 20 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.24 -4.80 9.14 -39.47 -0.36 -5.16 16 24 C -0.03 -0.55 9.78 -39.14 -0.38 -0.93 16 25 C 0.10 0.61 11.09 -16.56 -0.18 0.43 16 26 N -0.60 -4.24 5.25 -14.84 -0.08 -4.32 16 27 H 0.42 1.88 8.89 -40.82 -0.36 1.52 16 28 C 0.52 5.68 7.67 -15.47 -0.12 5.56 16 29 O -0.55 -7.85 16.78 4.83 0.08 -7.77 16 30 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.14 1.36 8.05 -52.49 -0.42 0.93 16 34 H 0.41 1.95 8.81 -40.82 -0.36 1.59 16 35 H 0.13 1.18 6.07 -52.49 -0.32 0.87 16 36 H 0.12 1.67 7.52 -52.49 -0.39 1.28 16 37 H 0.12 1.45 6.16 -52.48 -0.32 1.12 16 38 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.13 2.58 5.62 -52.48 -0.29 2.29 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 42 H 0.17 0.39 8.06 -52.49 -0.42 -0.03 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -33.64 370.62 -7.38 -41.03 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.37 Total: 7.02 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -4.37 Total: -15.07 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.62 Total: -32.26 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.17 Total: -20.31 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.64 -7.38 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158826740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.409 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds