Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38031 * 119.99580 * 2 1 4 4 C 1.38204 * 120.22381 * 180.02562 * 3 2 1 5 5 C 1.39013 * 120.21919 * 359.97438 * 4 3 2 6 6 N 1.39881 * 119.99797 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99765 * 144.82015 * 6 5 4 8 8 O 1.21598 * 120.00081 * 4.65334 * 7 6 5 9 9 C 1.47508 * 119.99789 * 184.66508 * 7 6 5 10 10 C 1.39675 * 120.19826 * 359.96988 * 9 7 6 11 11 C 1.37821 * 119.91745 * 180.02562 * 10 9 7 12 12 C 1.38577 * 120.32923 * 0.02562 * 11 10 9 13 13 C 1.38029 * 120.39966 * 0.02562 * 12 11 10 14 14 C 1.38834 * 120.07571 * 359.97137 * 13 12 11 15 15 O 1.35514 * 120.16445 * 180.02562 * 14 13 12 16 16 C 1.34814 * 116.99841 * 354.43508 * 15 14 13 17 17 H 1.07998 * 120.00086 * 5.04982 * 16 15 14 18 18 C 1.38698 * 119.99642 * 185.05507 * 16 15 14 19 19 N 1.31520 * 120.00362 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46795 * 90.00054 * 20 18 16 22 22 H 1.48503 * 109.47206 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47087 * 330.00213 * 20 18 16 24 24 C 1.38614 * 119.99936 * 0.27611 * 5 4 3 25 25 C 1.39497 * 119.77454 * 359.47459 * 24 5 4 26 26 C 1.47858 * 120.10901 * 180.22750 * 25 24 5 27 27 N 1.34779 * 120.00129 * 6.12494 * 26 25 24 28 28 O 1.21552 * 120.00079 * 186.11819 * 26 25 24 29 29 H 1.09002 * 109.47029 * 96.85726 * 1 2 3 30 30 H 1.08999 * 109.46895 * 216.85233 * 1 2 3 31 31 H 1.08996 * 109.47222 * 336.85327 * 1 2 3 32 32 H 1.07995 * 119.88848 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.88998 * 179.97438 * 4 3 2 34 34 H 0.96999 * 120.00156 * 324.81200 * 6 5 4 35 35 H 1.08003 * 120.04081 * 0.04836 * 10 9 7 36 36 H 1.08004 * 119.83666 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.80292 * 180.28217 * 12 11 10 38 38 H 1.07999 * 119.96553 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99874 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.11259 * 179.70481 * 24 5 4 41 41 H 0.96999 * 119.99900 * 359.97438 * 27 26 25 42 42 H 0.96998 * 119.99772 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1954 0.0000 4 6 3.5792 1.2009 -0.0005 5 6 4.2836 0.0025 -0.0005 6 7 5.6824 0.0135 -0.0005 7 6 6.3637 -0.9353 0.6720 8 8 5.7658 -1.8485 1.2078 9 6 7.8346 -0.8656 0.7581 10 6 8.5255 0.1814 0.1438 11 6 9.8999 0.2405 0.2275 12 6 10.6015 -0.7347 0.9183 13 6 9.9323 -1.7757 1.5295 14 6 8.5480 -1.8516 1.4558 15 8 7.8891 -2.8727 2.0556 16 6 8.6412 -3.8447 2.6098 17 1 9.7164 -3.7471 2.6353 18 6 8.0339 -4.9700 3.1471 19 7 6.7244 -5.0886 3.1163 20 14 9.0760 -6.3172 3.9144 21 1 9.2649 -6.0340 5.3599 22 1 8.3922 -7.6253 3.7515 23 1 10.3991 -6.3631 3.2419 24 6 3.5999 -1.2033 -0.0058 25 6 2.2050 -1.2087 0.0000 26 6 1.4682 -2.4907 -0.0004 27 7 2.1391 -3.6536 0.1181 28 8 0.2574 -2.4958 -0.1076 29 1 -0.3633 -0.1227 -1.0203 30 1 -0.3633 -0.8223 0.6163 31 1 -0.3633 0.9449 0.4039 32 1 1.6553 2.1296 -0.0004 33 1 4.1136 2.1394 -0.0009 34 1 6.1620 0.7038 -0.4846 35 1 7.9834 0.9438 -0.3959 36 1 10.4328 1.0509 -0.2477 37 1 11.6781 -0.6775 0.9824 38 1 10.4861 -2.5317 2.0664 39 1 6.2997 -5.8754 3.4924 40 1 4.1453 -2.1354 -0.0106 41 1 3.1054 -3.6495 0.2033 42 1 1.6558 -4.4946 0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171278648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -38.120746 kcal Electronic energy + Delta-G solvation = -28707.076041 eV Core-core repulsion = 24618.103473 eV Total energy + Delta-G solvation = -4088.972568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.56938 -39.68026 -38.71403 -37.53235 -36.48712 -34.58252 -33.79312 -32.46570 -31.63860 -30.85140 -30.18204 -29.06070 -26.47316 -25.47182 -24.09073 -23.30664 -21.93966 -21.45192 -20.43457 -19.97180 -18.39841 -18.03071 -17.46639 -16.72514 -16.29510 -15.93079 -15.50316 -15.02422 -14.88290 -14.74701 -14.53240 -14.42821 -14.11817 -13.97401 -13.74504 -13.49734 -13.27135 -13.10994 -12.88676 -12.65845 -12.11855 -11.96224 -11.82647 -11.72806 -11.50468 -11.43246 -11.22115 -11.00651 -10.91632 -10.55003 -9.99058 -9.70897 -9.61052 -9.42897 -9.11258 -8.99175 -8.84105 -8.44509 -7.85120 -7.44209 -6.57484 -4.16599 0.92491 1.35681 1.62556 2.19198 2.94958 3.04792 3.05472 3.10357 3.35213 3.50238 3.71640 3.83547 3.96204 4.48403 4.80711 4.92385 4.93498 5.03223 5.06084 5.18838 5.30837 5.36305 5.45446 5.54626 5.59789 5.82234 5.85961 5.90816 5.97215 5.98147 6.15834 6.31311 6.37617 6.42429 6.53790 6.59472 6.69019 6.77695 6.92895 6.95908 7.09466 7.12834 7.17731 7.52247 7.55523 7.73703 7.84575 8.40154 8.75262 8.83709 9.52409 10.56001 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003787 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.073345 B = 7392.533676 C = 9878.863263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.114 4.114 4 C -0.121 4.121 5 C 0.148 3.852 6 N -0.684 5.684 7 C 0.555 3.445 8 O -0.485 6.485 9 C -0.232 4.232 10 C -0.037 4.037 11 C -0.229 4.229 12 C -0.048 4.048 13 C -0.236 4.236 14 C 0.191 3.809 15 O -0.122 6.122 16 C -0.403 4.403 17 H 0.095 0.905 18 C 0.047 3.953 19 N -0.831 5.831 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.266 1.266 24 C -0.083 4.083 25 C -0.128 4.128 26 C 0.567 3.433 27 N -0.846 5.846 28 O -0.547 6.547 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.405 0.595 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.133 0.867 39 H 0.272 0.728 40 H 0.148 0.852 41 H 0.410 0.590 42 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 10.156 -7.232 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.133 4.133 4 C -0.142 4.142 5 C 0.053 3.947 6 N -0.332 5.332 7 C 0.346 3.654 8 O -0.358 6.358 9 C -0.237 4.237 10 C -0.055 4.055 11 C -0.248 4.248 12 C -0.067 4.067 13 C -0.255 4.255 14 C 0.131 3.869 15 O -0.020 6.020 16 C -0.479 4.479 17 H 0.112 0.888 18 C -0.162 4.162 19 N -0.462 5.462 20 Si 0.765 3.235 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.190 1.190 24 C -0.104 4.104 25 C -0.131 4.131 26 C 0.354 3.646 27 N -0.409 5.409 28 O -0.426 6.426 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.241 0.759 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.082 0.918 40 H 0.165 0.835 41 H 0.241 0.759 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.808 9.353 -6.743 12.143 hybrid contribution 1.454 -0.534 0.249 1.569 sum -2.354 8.820 -6.494 11.203 Atomic orbital electron populations 1.21009 0.90246 1.02629 1.03252 1.19944 0.96686 0.91460 0.96862 1.20755 0.93239 0.97416 1.01896 1.21086 0.94415 0.96687 1.02037 1.17580 0.83315 0.93450 1.00355 1.43563 1.03710 1.32501 1.53411 1.18397 0.87658 0.81402 0.77907 1.90912 1.69306 1.31825 1.43788 1.18647 0.91111 1.01322 1.12612 1.20758 0.94410 0.94850 0.95521 1.20475 0.93761 1.02180 1.08382 1.20936 0.98814 0.92881 0.94019 1.21177 0.93918 1.02312 1.08070 1.19224 0.90224 0.88409 0.89061 1.84143 1.33975 1.26364 1.57508 1.21515 0.91330 0.97168 1.37888 0.88780 1.25375 0.96262 0.97701 0.96822 1.70102 1.08429 1.28191 1.39460 0.85725 0.79191 0.79229 0.79393 1.19683 1.20055 1.19012 1.21556 0.92609 0.98957 0.97298 1.19613 0.93033 0.93205 1.07284 1.18217 0.86749 0.84309 0.75340 1.43861 1.12729 1.08217 1.76100 1.90721 1.13704 1.87455 1.50763 0.91119 0.88920 0.92767 0.85254 0.85402 0.75882 0.86995 0.87099 0.87026 0.84944 0.91771 0.83455 0.75896 0.76671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.72 36.01 0.31 -1.15 16 2 C -0.05 -0.67 5.92 -104.20 -0.62 -1.28 16 3 C -0.11 -1.36 9.65 -39.67 -0.38 -1.75 16 4 C -0.12 -1.48 9.96 -39.31 -0.39 -1.88 16 5 C 0.15 2.24 6.29 -83.76 -0.53 1.72 16 6 N -0.68 -10.33 5.28 -10.84 -0.06 -10.39 16 7 C 0.55 11.11 7.60 -12.48 -0.09 11.01 16 8 O -0.49 -11.81 12.62 -16.58 -0.21 -12.02 16 9 C -0.23 -4.62 5.89 -104.81 -0.62 -5.23 16 10 C -0.04 -0.57 9.53 -39.20 -0.37 -0.94 16 11 C -0.23 -3.43 10.02 -39.61 -0.40 -3.83 16 12 C -0.05 -0.78 10.03 -39.53 -0.40 -1.18 16 13 C -0.24 -4.72 9.16 -39.44 -0.36 -5.08 16 14 C 0.19 4.40 6.66 -38.59 -0.26 4.15 16 15 O -0.12 -3.36 7.84 -21.04 -0.16 -3.52 16 16 C -0.40 -10.76 9.49 30.90 0.29 -10.47 16 17 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 18 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 19 N -0.83 -23.48 13.67 55.48 0.76 -22.72 16 20 Si 0.94 19.55 29.55 -169.99 -5.02 14.52 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 24 C -0.08 -1.38 8.17 -38.97 -0.32 -1.70 16 25 C -0.13 -2.02 5.87 -104.99 -0.62 -2.64 16 26 C 0.57 9.16 7.98 -12.32 -0.10 9.06 16 27 N -0.85 -12.00 8.82 30.53 0.27 -11.73 16 28 O -0.55 -9.66 14.17 5.32 0.08 -9.58 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.36 5.85 -51.93 -0.30 1.06 16 31 H 0.05 0.55 8.03 -51.93 -0.42 0.14 16 32 H 0.13 1.16 8.05 -52.49 -0.42 0.73 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.40 4.61 6.86 -40.82 -0.28 4.33 16 35 H 0.11 1.27 6.41 -52.48 -0.34 0.94 16 36 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 38 H 0.13 2.63 5.64 -52.49 -0.30 2.33 16 39 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.15 2.68 4.64 -52.49 -0.24 2.44 16 41 H 0.41 6.01 6.90 -40.82 -0.28 5.73 16 42 H 0.40 4.89 8.93 -40.82 -0.36 4.53 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -33.27 356.84 -7.96 -41.23 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -4.05 Total: 18.88 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.94 Total: -10.05 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.97 Total: -44.84 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.30 Total: -25.13 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.27 -7.96 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171278648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.106 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds