Wall clock time and date at job start Sat Apr 11 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38031 * 119.99580 * 2 1 4 4 C 1.38204 * 120.22381 * 180.02562 * 3 2 1 5 5 C 1.39013 * 120.21919 * 359.97438 * 4 3 2 6 6 N 1.39881 * 119.99797 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99765 * 144.82015 * 6 5 4 8 8 O 1.21598 * 120.00081 * 4.65334 * 7 6 5 9 9 C 1.47508 * 119.99789 * 184.66508 * 7 6 5 10 10 C 1.39675 * 120.19826 * 359.96988 * 9 7 6 11 11 C 1.37821 * 119.91745 * 180.02562 * 10 9 7 12 12 C 1.38577 * 120.32923 * 0.02562 * 11 10 9 13 13 C 1.38029 * 120.39966 * 0.02562 * 12 11 10 14 14 C 1.38834 * 120.07571 * 359.97137 * 13 12 11 15 15 O 1.35514 * 120.16445 * 180.02562 * 14 13 12 16 16 C 1.34814 * 116.99841 * 354.43508 * 15 14 13 17 17 H 1.07998 * 120.00086 * 5.04982 * 16 15 14 18 18 C 1.38698 * 119.99642 * 185.05507 * 16 15 14 19 19 N 1.31520 * 120.00362 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99838 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46795 * 90.00054 * 20 18 16 22 22 H 1.48503 * 109.47206 * 209.99793 * 20 18 16 23 23 H 1.48496 * 109.47087 * 330.00213 * 20 18 16 24 24 C 1.38614 * 119.99936 * 0.27611 * 5 4 3 25 25 C 1.39497 * 119.77454 * 359.47459 * 24 5 4 26 26 C 1.47858 * 120.10901 * 180.22750 * 25 24 5 27 27 N 1.34779 * 120.00129 * 6.12494 * 26 25 24 28 28 O 1.21552 * 120.00079 * 186.11819 * 26 25 24 29 29 H 1.09002 * 109.47029 * 96.85726 * 1 2 3 30 30 H 1.08999 * 109.46895 * 216.85233 * 1 2 3 31 31 H 1.08996 * 109.47222 * 336.85327 * 1 2 3 32 32 H 1.07995 * 119.88848 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.88998 * 179.97438 * 4 3 2 34 34 H 0.96999 * 120.00156 * 324.81200 * 6 5 4 35 35 H 1.08003 * 120.04081 * 0.04836 * 10 9 7 36 36 H 1.08004 * 119.83666 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.80292 * 180.28217 * 12 11 10 38 38 H 1.07999 * 119.96553 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99874 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.11259 * 179.70481 * 24 5 4 41 41 H 0.96999 * 119.99900 * 359.97438 * 27 26 25 42 42 H 0.96998 * 119.99772 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1971 1.1954 0.0000 4 6 3.5792 1.2009 -0.0005 5 6 4.2836 0.0025 -0.0005 6 7 5.6824 0.0135 -0.0005 7 6 6.3637 -0.9353 0.6720 8 8 5.7658 -1.8485 1.2078 9 6 7.8346 -0.8656 0.7581 10 6 8.5255 0.1814 0.1438 11 6 9.8999 0.2405 0.2275 12 6 10.6015 -0.7347 0.9183 13 6 9.9323 -1.7757 1.5295 14 6 8.5480 -1.8516 1.4558 15 8 7.8891 -2.8727 2.0556 16 6 8.6412 -3.8447 2.6098 17 1 9.7164 -3.7471 2.6353 18 6 8.0339 -4.9700 3.1471 19 7 6.7244 -5.0886 3.1163 20 14 9.0760 -6.3172 3.9144 21 1 9.2649 -6.0340 5.3599 22 1 8.3922 -7.6253 3.7515 23 1 10.3991 -6.3631 3.2419 24 6 3.5999 -1.2033 -0.0058 25 6 2.2050 -1.2087 0.0000 26 6 1.4682 -2.4907 -0.0004 27 7 2.1391 -3.6536 0.1181 28 8 0.2574 -2.4958 -0.1076 29 1 -0.3633 -0.1227 -1.0203 30 1 -0.3633 -0.8223 0.6163 31 1 -0.3633 0.9449 0.4039 32 1 1.6553 2.1296 -0.0004 33 1 4.1136 2.1394 -0.0009 34 1 6.1620 0.7038 -0.4846 35 1 7.9834 0.9438 -0.3959 36 1 10.4328 1.0509 -0.2477 37 1 11.6781 -0.6775 0.9824 38 1 10.4861 -2.5317 2.0664 39 1 6.2997 -5.8754 3.4924 40 1 4.1453 -2.1354 -0.0106 41 1 3.1054 -3.6495 0.2033 42 1 1.6558 -4.4946 0.1174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171278648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:45 Heat of formation + Delta-G solvation = -61.990884 kcal Electronic energy + Delta-G solvation = -28708.111127 eV Core-core repulsion = 24618.103473 eV Total energy + Delta-G solvation = -4090.007654 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86847 -41.08765 -40.17730 -38.87163 -38.03152 -35.94089 -35.04354 -34.31809 -32.93754 -31.95919 -31.48412 -30.56982 -27.72625 -27.22310 -25.31860 -24.64023 -23.32683 -22.74635 -21.69680 -21.35253 -19.90680 -19.57811 -18.86168 -18.10414 -17.72367 -17.22970 -16.60966 -16.39748 -16.33627 -16.10234 -16.05032 -15.89795 -15.60654 -15.35820 -15.02885 -15.00194 -14.48024 -14.31725 -14.24279 -14.20955 -13.55142 -13.26697 -13.04426 -12.99517 -12.77583 -12.74215 -12.56818 -12.49686 -12.33481 -12.13678 -11.42446 -11.25453 -10.87547 -10.82741 -10.68373 -10.60696 -9.98176 -9.87445 -9.11853 -8.95545 -8.45038 -6.14584 -0.21399 0.02953 0.38157 0.73272 1.33199 1.43128 1.50598 1.72826 2.01724 2.11198 2.15142 2.52662 2.79412 2.89213 3.22029 3.44552 3.66786 3.84890 3.93155 3.99440 4.07536 4.21283 4.28037 4.39068 4.47908 4.53556 4.64343 4.78639 4.85026 4.89594 4.96576 5.06567 5.09154 5.13960 5.24034 5.31356 5.44078 5.48624 5.60668 5.61084 5.70584 5.80387 5.95386 5.97233 6.16240 6.25015 6.54970 6.95207 7.15859 7.33592 7.78290 8.74331 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003787 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.073345 B = 7392.533676 C = 9878.863263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.104 4.104 4 C -0.100 4.100 5 C 0.124 3.876 6 N -0.659 5.659 7 C 0.549 3.451 8 O -0.540 6.540 9 C -0.245 4.245 10 C -0.028 4.028 11 C -0.201 4.201 12 C -0.039 4.039 13 C -0.259 4.259 14 C 0.153 3.847 15 O -0.184 6.184 16 C -0.427 4.427 17 H 0.105 0.895 18 C -0.016 4.016 19 N -0.898 5.898 20 Si 1.015 2.985 21 H -0.265 1.265 22 H -0.273 1.273 23 H -0.249 1.249 24 C -0.103 4.103 25 C -0.150 4.150 26 C 0.560 3.440 27 N -0.840 5.840 28 O -0.567 6.567 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.171 0.829 34 H 0.425 0.575 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.270 0.730 40 H 0.118 0.882 41 H 0.407 0.593 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 15.062 -8.982 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.055 4.055 3 C -0.122 4.122 4 C -0.120 4.120 5 C 0.029 3.971 6 N -0.308 5.308 7 C 0.341 3.659 8 O -0.417 6.417 9 C -0.249 4.249 10 C -0.046 4.046 11 C -0.219 4.219 12 C -0.057 4.057 13 C -0.278 4.278 14 C 0.098 3.902 15 O -0.086 6.086 16 C -0.502 4.502 17 H 0.122 0.878 18 C -0.216 4.216 19 N -0.533 5.533 20 Si 0.835 3.165 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.173 1.173 24 C -0.124 4.124 25 C -0.153 4.153 26 C 0.347 3.653 27 N -0.403 5.403 28 O -0.449 6.449 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.266 0.734 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.238 0.762 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -1.782 14.346 -8.554 16.798 hybrid contribution 0.925 -1.603 0.533 1.926 sum -0.857 12.743 -8.021 15.082 Atomic orbital electron populations 1.20968 0.89362 1.03307 1.03067 1.20307 0.97524 0.91594 0.96070 1.21236 0.93260 0.98038 0.99628 1.21503 0.94644 0.96817 0.99063 1.17825 0.83177 0.94152 1.01935 1.43172 1.03852 1.31544 1.52233 1.18634 0.88074 0.81507 0.77733 1.90917 1.70297 1.34212 1.46236 1.19114 0.91465 1.01861 1.12489 1.21342 0.95212 0.94000 0.94065 1.21180 0.93554 1.01898 1.05272 1.21453 1.00944 0.91261 0.92015 1.21306 0.92902 1.04026 1.09588 1.20026 0.92081 0.88384 0.89705 1.84149 1.35186 1.28269 1.61010 1.21976 0.91993 0.97913 1.38354 0.87765 1.26604 0.97508 1.00116 0.97381 1.70280 1.10672 1.29351 1.43015 0.84644 0.77780 0.75618 0.78505 1.18953 1.19816 1.17277 1.21414 0.93083 0.98919 0.99025 1.19681 0.92812 0.93814 1.09018 1.18491 0.86666 0.85006 0.75105 1.43842 1.12536 1.08484 1.75409 1.90702 1.14292 1.87832 1.52035 0.90904 0.91443 0.89584 0.80934 0.81114 0.73433 0.81835 0.81837 0.83046 0.86007 0.92091 0.86396 0.76250 0.75798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 8.72 71.24 0.62 -2.04 16 2 C -0.05 -1.42 5.92 -19.59 -0.12 -1.53 16 3 C -0.10 -2.05 9.65 22.21 0.21 -1.83 16 4 C -0.10 -2.04 9.96 22.45 0.22 -1.82 16 5 C 0.12 3.61 6.29 38.13 0.24 3.85 16 6 N -0.66 -18.85 5.28 -306.47 -1.62 -20.47 16 7 C 0.55 22.53 7.60 86.69 0.66 23.18 16 8 O -0.54 -28.52 12.62 16.87 0.21 -28.30 16 9 C -0.24 -9.64 5.89 -19.99 -0.12 -9.76 16 10 C -0.03 -0.74 9.53 22.52 0.21 -0.52 16 11 C -0.20 -4.76 10.02 22.25 0.22 -4.54 16 12 C -0.04 -1.11 10.03 22.30 0.22 -0.88 16 13 C -0.26 -10.38 9.16 22.36 0.20 -10.18 16 14 C 0.15 7.38 6.66 22.91 0.15 7.53 16 15 O -0.18 -11.00 7.84 0.90 0.01 -10.99 16 16 C -0.43 -24.60 9.49 67.93 0.64 -23.96 16 17 H 0.11 5.42 5.21 -2.91 -0.02 5.41 16 18 C -0.02 -0.91 5.49 84.85 0.47 -0.44 16 19 N -0.90 -55.71 13.67 21.62 0.30 -55.42 16 20 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.10 -3.60 8.17 22.66 0.19 -3.42 16 25 C -0.15 -4.91 5.87 -20.10 -0.12 -5.02 16 26 C 0.56 19.40 7.98 86.79 0.69 20.09 16 27 N -0.84 -26.64 8.82 -175.59 -1.55 -28.19 16 28 O -0.57 -21.07 14.17 -3.88 -0.05 -21.13 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.00 5.85 -2.39 -0.01 1.99 16 31 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 32 H 0.17 1.98 8.05 -2.91 -0.02 1.96 16 33 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.43 7.94 6.86 -92.71 -0.64 7.30 16 35 H 0.16 2.58 6.41 -2.91 -0.02 2.56 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.12 4.80 4.64 -2.91 -0.01 4.79 16 41 H 0.41 13.78 6.90 -92.71 -0.64 13.14 16 42 H 0.41 11.21 8.93 -92.71 -0.83 10.39 16 Total: -1.00 -85.46 356.84 2.97 -82.49 By element: Atomic # 1 Polarization: 49.58 SS G_CDS: -0.96 Total: 48.62 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.61 Total: -11.29 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -2.87 Total: -104.07 kcal Atomic # 8 Polarization: -60.59 SS G_CDS: 0.16 Total: -60.42 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -85.46 2.97 -82.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171278648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.498 kcal (2) G-P(sol) polarization free energy of solvation -85.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds